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Search of human proteins with 169160624
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169160624 PREDICTED: hypothetical protein [Homo sapiens]
(284 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169160624 PREDICTED: hypothetical protein [Homo sapiens] 575 e-164
gi|113412136 PREDICTED: hypothetical protein [Homo sapiens] 313 8e-86
gi|113408483 PREDICTED: hypothetical protein [Homo sapiens] 313 8e-86
gi|169211844 PREDICTED: hypothetical protein [Homo sapiens] 51 1e-06
gi|239756845 PREDICTED: hypothetical protein [Homo sapiens] 50 2e-06
gi|169211031 PREDICTED: hypothetical protein [Homo sapiens] 50 2e-06
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 48 1e-05
gi|44662807 hypothetical protein LOC388407 [Homo sapiens] 45 7e-05
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 43 3e-04
gi|169162742 PREDICTED: hypothetical protein [Homo sapiens] 42 5e-04
gi|113416994 PREDICTED: hypothetical protein [Homo sapiens] 42 6e-04
gi|113416470 PREDICTED: hypothetical protein [Homo sapiens] 42 6e-04
gi|239751449 PREDICTED: hypothetical protein XP_002347867 [Homo ... 42 8e-04
gi|239745954 PREDICTED: hypothetical protein XP_002343623 [Homo ... 42 8e-04
gi|154146231 DMRT-like family A2 [Homo sapiens] 42 8e-04
gi|239756937 PREDICTED: hypothetical protein [Homo sapiens] 41 0.001
gi|150170699 kinesin family member 26A [Homo sapiens] 41 0.001
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 41 0.001
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 40 0.002
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 40 0.002
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 40 0.002
gi|169167740 PREDICTED: hypothetical protein [Homo sapiens] 40 0.002
gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo ... 40 0.002
gi|239743688 PREDICTED: hypothetical protein XP_002342946 [Homo ... 40 0.002
gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2 pre... 40 0.002
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 40 0.002
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 40 0.002
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 40 0.002
gi|48762934 alpha 2 type I collagen [Homo sapiens] 40 0.003
gi|239756124 PREDICTED: hypothetical protein [Homo sapiens] 40 0.003
>gi|169160624 PREDICTED: hypothetical protein [Homo sapiens]
Length = 284
Score = 575 bits (1481), Expect = e-164
Identities = 284/284 (100%), Positives = 284/284 (100%)
Query: 1 MESWGWKCVAGPKASPLRPSLSPTRLALRAQAQAAQGPWPDSRSRGGQVSGVTRGEKSCW 60
MESWGWKCVAGPKASPLRPSLSPTRLALRAQAQAAQGPWPDSRSRGGQVSGVTRGEKSCW
Sbjct: 1 MESWGWKCVAGPKASPLRPSLSPTRLALRAQAQAAQGPWPDSRSRGGQVSGVTRGEKSCW 60
Query: 61 KTLVGCRELVTPRLSRPETRACSARDPDQEPGSLPRLSQLGQSWRXXXXXXXGPHPPRRA 120
KTLVGCRELVTPRLSRPETRACSARDPDQEPGSLPRLSQLGQSWR GPHPPRRA
Sbjct: 61 KTLVGCRELVTPRLSRPETRACSARDPDQEPGSLPRLSQLGQSWRXXXXXXXGPHPPRRA 120
Query: 121 SPRHAPAAAGGVSMGPSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPGDRPGGGAAS 180
SPRHAPAAAGGVSMGPSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPGDRPGGGAAS
Sbjct: 121 SPRHAPAAAGGVSMGPSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPGDRPGGGAAS 180
Query: 181 PLPAPLLASRPRPRGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQVHAPAG 240
PLPAPLLASRPRPRGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQVHAPAG
Sbjct: 181 PLPAPLLASRPRPRGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQVHAPAG 240
Query: 241 DALTEVRTAVPGQVKPRTLGPKNLTGTPCLMKLRTARCASSESG 284
DALTEVRTAVPGQVKPRTLGPKNLTGTPCLMKLRTARCASSESG
Sbjct: 241 DALTEVRTAVPGQVKPRTLGPKNLTGTPCLMKLRTARCASSESG 284
>gi|113412136 PREDICTED: hypothetical protein [Homo sapiens]
Length = 151
Score = 313 bits (803), Expect = 8e-86
Identities = 151/151 (100%), Positives = 151/151 (100%)
Query: 134 MGPSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPGDRPGGGAASPLPAPLLASRPRP 193
MGPSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPGDRPGGGAASPLPAPLLASRPRP
Sbjct: 1 MGPSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPGDRPGGGAASPLPAPLLASRPRP 60
Query: 194 RGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQVHAPAGDALTEVRTAVPGQ 253
RGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQVHAPAGDALTEVRTAVPGQ
Sbjct: 61 RGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQVHAPAGDALTEVRTAVPGQ 120
Query: 254 VKPRTLGPKNLTGTPCLMKLRTARCASSESG 284
VKPRTLGPKNLTGTPCLMKLRTARCASSESG
Sbjct: 121 VKPRTLGPKNLTGTPCLMKLRTARCASSESG 151
>gi|113408483 PREDICTED: hypothetical protein [Homo sapiens]
Length = 151
Score = 313 bits (803), Expect = 8e-86
Identities = 151/151 (100%), Positives = 151/151 (100%)
Query: 134 MGPSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPGDRPGGGAASPLPAPLLASRPRP 193
MGPSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPGDRPGGGAASPLPAPLLASRPRP
Sbjct: 1 MGPSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPGDRPGGGAASPLPAPLLASRPRP 60
Query: 194 RGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQVHAPAGDALTEVRTAVPGQ 253
RGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQVHAPAGDALTEVRTAVPGQ
Sbjct: 61 RGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQVHAPAGDALTEVRTAVPGQ 120
Query: 254 VKPRTLGPKNLTGTPCLMKLRTARCASSESG 284
VKPRTLGPKNLTGTPCLMKLRTARCASSESG
Sbjct: 121 VKPRTLGPKNLTGTPCLMKLRTARCASSESG 151
>gi|169211844 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 50.8 bits (120), Expect = 1e-06
Identities = 50/166 (30%), Positives = 62/166 (37%), Gaps = 9/166 (5%)
Query: 116 PPRRASPRHAPAAAGGVSMGPSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPGDRPG 175
P RR PR + G P PGG +G A GG G G ++RA GA RP
Sbjct: 7 PARRLQPRKSSFPGDG-DEAPGPGGGEGAAAGGGGGGLGSGGRSAQRRAGAGA---RRPI 62
Query: 176 GGAASPLPAPLLASRPRPRGRCAPDGAQAGVGASRLRR----RRAPSGTLNGPYAQDKHG 231
G A S P L R G C P G + G +LRR RR + P AQ
Sbjct: 63 GAAPSVGPGGELQGWGRKSG-CRPPGPEGWAGGRKLRRWLPPRRFSNFCCRSPCAQTAVR 121
Query: 232 LNQVHAPAGDALTEVRTAVPGQVKPRTLGPKNLTGTPCLMKLRTAR 277
+ AP+ A G+ P T+ P + R R
Sbjct: 122 RRRRRAPSPRGAGWREGAGAGRGTPATMAGGEWAAEPLHLPQRGRR 167
>gi|239756845 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 50.1 bits (118), Expect = 2e-06
Identities = 47/148 (31%), Positives = 58/148 (39%), Gaps = 9/148 (6%)
Query: 116 PPRRASPRHAPAAAGGVSMGPSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPGDRPG 175
P RR PR + G P PGG +G A GG G G ++RA GA RP
Sbjct: 7 PARRLQPRKSSFPGDG-DEAPGPGGGEGAAAGGGGGGLGSGGRSAQRRAGAGA---RRPI 62
Query: 176 GGAASPLPAPLLASRPRPRGRCAPDGAQAGVGASRLRR----RRAPSGTLNGPYAQDKHG 231
G A S P L R G C P G + G +LRR RR + P AQ
Sbjct: 63 GAAPSVGPGGELQGWGRKSG-CRPPGPEGWAGGRKLRRWLPPRRFSNFCCRSPCAQTAVR 121
Query: 232 LNQVHAPAGDALTEVRTAVPGQVKPRTL 259
+ AP+ A G+ P T+
Sbjct: 122 RRRRRAPSPRGAGWREGAGAGRGTPATM 149
>gi|169211031 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 50.1 bits (118), Expect = 2e-06
Identities = 47/148 (31%), Positives = 58/148 (39%), Gaps = 9/148 (6%)
Query: 116 PPRRASPRHAPAAAGGVSMGPSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPGDRPG 175
P RR PR + G P PGG +G A GG G G ++RA GA RP
Sbjct: 7 PARRLQPRKSSFPGDG-DEAPGPGGGEGAAAGGGGGGLGSGGRSAQRRAGAGA---RRPI 62
Query: 176 GGAASPLPAPLLASRPRPRGRCAPDGAQAGVGASRLRR----RRAPSGTLNGPYAQDKHG 231
G A S P L R G C P G + G +LRR RR + P AQ
Sbjct: 63 GAAPSVGPGGELQGWGRKSG-CRPPGPEGWAGGRKLRRWLPPRRFSNFCCRSPCAQTAVR 121
Query: 232 LNQVHAPAGDALTEVRTAVPGQVKPRTL 259
+ AP+ A G+ P T+
Sbjct: 122 RRRRRAPSPRGAGWREGAGAGRGTPATM 149
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 47.8 bits (112), Expect = 1e-05
Identities = 49/187 (26%), Positives = 63/187 (33%), Gaps = 26/187 (13%)
Query: 87 PDQEPGSLPRLSQLGQSWRXXXXXXXGPHP----------PRRASPRHAPAAAGGVSMGP 136
P + G P+ QS R GP P P P+ P G GP
Sbjct: 218 PGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGP 277
Query: 137 SPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPGDRPGGG--AASPLPAPLLASRPRPR 194
P GK G GG+++ R+ G G P GG P P P P P+
Sbjct: 278 PPPGKPQGPPPQGGSKS------RSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQ 331
Query: 195 GRCAPDG--------AQAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQVHAPAGDALTEV 246
G P G G S+ R R+P G GP Q+ + PAG +
Sbjct: 332 GGNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQP 391
Query: 247 RTAVPGQ 253
+ GQ
Sbjct: 392 QAPPAGQ 398
Score = 41.2 bits (95), Expect = 0.001
Identities = 41/136 (30%), Positives = 48/136 (35%), Gaps = 20/136 (14%)
Query: 113 GPHPPRRASPRHAPAAAGGVSMGPSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPGD 172
GP PP P+ P G GP P GK G G ++ R+ G G
Sbjct: 193 GPPPPP-GKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSA------RSPPGKPQGP 245
Query: 173 RPGGG--AASPLPAPLLASRPRPRGRCAPDG--------AQAGVGASRLRRRRAPSGTLN 222
P GG P P P P P+G P G G S+ R R+P G
Sbjct: 246 PPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQ 305
Query: 223 GPYAQDKHGLNQVHAP 238
GP Q G NQ P
Sbjct: 306 GPPPQ---GGNQPQGP 318
Score = 39.7 bits (91), Expect = 0.003
Identities = 40/136 (29%), Positives = 47/136 (34%), Gaps = 21/136 (15%)
Query: 113 GPHPPRRASPRHAPAAAGGVSMGPSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPGD 172
GP PP P+ P G GP P GK G G+ R+ G G
Sbjct: 70 GPPPPP-GKPQGPPPQGGNKPQGPPPPGKPQGP-------PPQGDKSRSPRSPPGKPQGP 121
Query: 173 RPGGG--AASPLPAPLLASRPRPRGRCAPDG--------AQAGVGASRLRRRRAPSGTLN 222
P GG P P P P P+G P G G ++ R R+P G
Sbjct: 122 PPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSRSPPGKPQ 181
Query: 223 GPYAQDKHGLNQVHAP 238
GP Q G NQ P
Sbjct: 182 GPPPQ---GGNQPQGP 194
Score = 30.4 bits (67), Expect = 1.8
Identities = 25/85 (29%), Positives = 31/85 (36%), Gaps = 6/85 (7%)
Query: 113 GPHPPRRASPRHAPAAAGGVSMGPSPGGKDGGAFIWGG-----ARAGGGEALTRKRARGG 167
GP PP P+ P G GP P GK G GG AR+ G+ + G
Sbjct: 317 GPPPPP-GKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGN 375
Query: 168 AVPGDRPGGGAASPLPAPLLASRPR 192
G P G P A +P+
Sbjct: 376 NPQGPPPPAGGNPQQPQAPPAGQPQ 400
>gi|44662807 hypothetical protein LOC388407 [Homo sapiens]
Length = 251
Score = 45.1 bits (105), Expect = 7e-05
Identities = 48/175 (27%), Positives = 61/175 (34%), Gaps = 27/175 (15%)
Query: 83 SARDPDQEPGSLPRLSQLGQSWRXXXXXXXGPHPPR------RASPRHAPAAAGGVSMGP 136
S +DP P S P + LG R P RA+ APA GG
Sbjct: 24 SGKDPKSSPASSPSFAVLGPEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSG 83
Query: 137 SPGGKDGGAFIWGGARAGGGEALTRKRARGG---AVPGDRPGG--------GAASPLPAP 185
SPG G AF G AG + ARGG +P GG GA P P P
Sbjct: 84 SPGHPPGSAF---GVEAGCRALNVSEHARGGFALGLPFGLSGGAYLFLLLDGAGDPKPTP 140
Query: 186 LLASRPRPRGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQVHAPAG 240
+ DG S + + P+G+ +G + + GL P G
Sbjct: 141 -------EAPISSADGRAWFPSESSWQLPQLPAGSTSGSEPRARPGLGPRQLPTG 188
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 43.1 bits (100), Expect = 3e-04
Identities = 39/121 (32%), Positives = 46/121 (38%), Gaps = 27/121 (22%)
Query: 117 PRRASPRHAP------AAAGGVSMGPSPGGKDGGAFIWGGARAGGGEALTRKRARGGAV- 169
P R SP+H + S PSP G G WG + GG R A GG
Sbjct: 275 PSRLSPKHRDEGRKTGSQRSSGSRSPSPSGGSG----WGSPQRNGGSG-QRSGAHGGRPG 329
Query: 170 ----PGDRPGGG-------AASPLPAPLLASRPRPRGRCAPD----GAQAGVGASRLRRR 214
P D+P AA+ P P + P R AP G +A GA R RRR
Sbjct: 330 SAHSPPDKPSSPSPRVRDKAAAAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGRRRRR 389
Query: 215 R 215
R
Sbjct: 390 R 390
Score = 31.2 bits (69), Expect = 1.1
Identities = 42/156 (26%), Positives = 55/156 (35%), Gaps = 26/156 (16%)
Query: 114 PHPPRRASPRHAPAAAGGVSMGP-----SPGGKDGGAFIWGGARAGGGEALTRKRARGGA 168
P P SPR AA P SP + + G RA GG R+R R
Sbjct: 335 PDKPSSPSPRVRDKAAAAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRR--- 391
Query: 169 VPGDRPGGGAASPLPAPLLASRPRPRGRCAPDGAQAGVGASRLRRRRAPSGTLNG---PY 225
R +S AS PR RGR P A + L R R+ S + +G P
Sbjct: 392 ----RRRRSRSS-------ASAPRRRGRRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPG 440
Query: 226 AQDKHGLNQVHAPAGDALTEVRTAVPGQVKPRTLGP 261
+ G + H G E P + +P + P
Sbjct: 441 PGPEPGSERGHGGHGKRAKE----RPPRARPASTSP 472
>gi|169162742 PREDICTED: hypothetical protein [Homo sapiens]
Length = 382
Score = 42.4 bits (98), Expect = 5e-04
Identities = 53/176 (30%), Positives = 66/176 (37%), Gaps = 23/176 (13%)
Query: 114 PHPPRRAS--PRHAPAAAG----GVSMGPSPGGKDGGAFIWGGARAGGGEALTRKRARGG 167
P PP +AS PRH + P P G GG R GG+ ++ + RGG
Sbjct: 67 PTPPAKASVQPRHPARYISLLRYSEAAAPLPRG--------GGGR--GGQDISLRARRGG 116
Query: 168 AVPGDRPGGGAASPLPAPLLASRPRPRGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQ 227
GDR GA P LLA P A A G+G R + R P +L A
Sbjct: 117 TRTGDR---GAELTRPQSLLARGLGPNWLAAA-AANQGLGRGRDQPRPGPLPSLRAQEAG 172
Query: 228 DKHGLNQVHAPAGDALTEVRTAVPGQVKPRTLGPKN-LTGTPCLMKLRTARCASSE 282
+ N V G G +P GP+ L G ARCA+SE
Sbjct: 173 RRG--NAVGGVTGTGSRLHAPGARGSQRPSARGPRGPLPGLAAWCYRPRARCAASE 226
>gi|113416994 PREDICTED: hypothetical protein [Homo sapiens]
Length = 302
Score = 42.0 bits (97), Expect = 6e-04
Identities = 55/214 (25%), Positives = 70/214 (32%), Gaps = 15/214 (7%)
Query: 12 PKASPLRPSLSPTRLALRAQAQAAQGPWPDSRSRGGQVSGVTRGEKSCWKTLVGCRELVT 71
P P S T L A+A A GP R+ SG +
Sbjct: 69 PLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARND-HRPPGRAPPRHA 127
Query: 72 PRLSRPETR------ACSARDPDQEPGSLPRLSQLGQSWRXXXXXXXGPHPPRRASPRHA 125
PR RP R A A++P P P G R HP R P
Sbjct: 128 PRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGP-GTRSRGPPRRARSQHPERSPEPEGR 186
Query: 126 PAAAGGVSMGPSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPGDRPGGGAASPLPAP 185
A + P PG + G R+G G+ R GGA G RP P+P
Sbjct: 187 GNHARKPAALPVPGRFPIRPVL--GGRSGPGDRSLRSAHLGGAGQG-RPWTARPPPIPH- 242
Query: 186 LLASRPRPRGRCAPDGAQAGVGASRLRRRRAPSG 219
+RPRP+ C+ G +G + SG
Sbjct: 243 ---TRPRPKCACSAPGTNRNLGPRVAGANHSASG 273
>gi|113416470 PREDICTED: hypothetical protein [Homo sapiens]
Length = 302
Score = 42.0 bits (97), Expect = 6e-04
Identities = 55/214 (25%), Positives = 70/214 (32%), Gaps = 15/214 (7%)
Query: 12 PKASPLRPSLSPTRLALRAQAQAAQGPWPDSRSRGGQVSGVTRGEKSCWKTLVGCRELVT 71
P P S T L A+A A GP R+ SG +
Sbjct: 69 PLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARND-HRPPGRAPPRHA 127
Query: 72 PRLSRPETR------ACSARDPDQEPGSLPRLSQLGQSWRXXXXXXXGPHPPRRASPRHA 125
PR RP R A A++P P P G R HP R P
Sbjct: 128 PRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGP-GTRSRGPPRRARSQHPERSPEPEGR 186
Query: 126 PAAAGGVSMGPSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPGDRPGGGAASPLPAP 185
A + P PG + G R+G G+ R GGA G RP P+P
Sbjct: 187 GNHARKPAALPVPGRFPIRPVL--GGRSGPGDRSLRSAHLGGAGQG-RPWTARPPPIPH- 242
Query: 186 LLASRPRPRGRCAPDGAQAGVGASRLRRRRAPSG 219
+RPRP+ C+ G +G + SG
Sbjct: 243 ---TRPRPKCACSTPGTNRNLGPRVAGANHSASG 273
>gi|239751449 PREDICTED: hypothetical protein XP_002347867 [Homo
sapiens]
Length = 315
Score = 41.6 bits (96), Expect = 8e-04
Identities = 38/118 (32%), Positives = 50/118 (42%), Gaps = 18/118 (15%)
Query: 114 PHPPR--RASPRHAPAAAGGVSMGPSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPG 171
P PPR R S RH AG + GP G++ G+R + R RARG + PG
Sbjct: 64 PFPPRPERPSRRHR---AGCGAHGPGSRGRERRR----GSRDPPAGPVARARARGRSAPG 116
Query: 172 D-RPGGGAASPLPAPLLASRPRPRGRCAPDGAQAGVGAS--------RLRRRRAPSGT 220
+P GAA P AP A P + +G+S R+R P+GT
Sbjct: 117 SAQPASGAAGPAAAPEAAPPAWDPATLPPSRKRNSLGSSPLHPVRLGRVRAHAGPAGT 174
>gi|239745954 PREDICTED: hypothetical protein XP_002343623 [Homo
sapiens]
Length = 315
Score = 41.6 bits (96), Expect = 8e-04
Identities = 38/118 (32%), Positives = 50/118 (42%), Gaps = 18/118 (15%)
Query: 114 PHPPR--RASPRHAPAAAGGVSMGPSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPG 171
P PPR R S RH AG + GP G++ G+R + R RARG + PG
Sbjct: 64 PFPPRPERPSRRHR---AGCGAHGPGSRGRERRR----GSRDPPAGPVARARARGRSAPG 116
Query: 172 D-RPGGGAASPLPAPLLASRPRPRGRCAPDGAQAGVGAS--------RLRRRRAPSGT 220
+P GAA P AP A P + +G+S R+R P+GT
Sbjct: 117 SAQPASGAAGPAAAPEAAPPAWDPATLPPSRKRNSLGSSPLHPVRLGRVRAHAGPAGT 174
>gi|154146231 DMRT-like family A2 [Homo sapiens]
Length = 542
Score = 41.6 bits (96), Expect = 8e-04
Identities = 73/266 (27%), Positives = 99/266 (37%), Gaps = 31/266 (11%)
Query: 26 LALRAQAQAAQGPWPDSRSRGGQVSGVTRGEKSC-WKTLVGCR-ELVTPRLSRPETRACS 83
L LRA + + P G VS + ++ C WK + + L+ R +
Sbjct: 56 LLLRAAEKYPRTPKCARCRNHGVVSALKGHKRYCRWKDCLCAKCTLIAERQRVMAAQVAL 115
Query: 84 ARDPDQEPGSLPRLSQL-GQSWRXXXXXXXGPHPPRRASPRHAP--AAAGGVSMGPSPGG 140
R QE L L G + G PPR A AA GG +P G
Sbjct: 116 RRQQAQEENEARELQLLYGTAEGLALAAANGIIPPRPAYEVFGSVCAADGGGPGAGAPAG 175
Query: 141 KDGGAFIWGGARAGGGEALTRK--RARGGAVPGDRPGGGAASPLPAPLLASRPRPRGRCA 198
GGA A AGG EA +K + RPG SPLP P+ +P +
Sbjct: 176 TGGGA-----AGAGGSEAKLQKFDLFPKTLLQAGRPG----SPLPPPV---KP-----LS 218
Query: 199 PDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQVHAPAGDALTEVRTAVPGQVKPRT 258
PDGA +G G S R SG+ NG G + +P A E + PG P
Sbjct: 219 PDGADSGPGTSS-PEVRPGSGSENG------DGESFSGSPLARASKEAGGSCPGSAGPGG 271
Query: 259 LGPKNLTGTPCLMKLRTARCASSESG 284
G ++ G+ + + A E G
Sbjct: 272 GGEEDSPGSASPLGSESGSEADKEEG 297
Score = 35.4 bits (80), Expect = 0.057
Identities = 35/128 (27%), Positives = 49/128 (38%), Gaps = 16/128 (12%)
Query: 114 PHPPRRASPRHAPAAAGGVSMGPSPG-GKDGGAFIWGGARAGGGEALTRKRARGGAVPGD 172
P P + SP A + G S PG G + G G G + GG+ PG
Sbjct: 211 PPPVKPLSPDGADSGPGTSSPEVRPGSGSENG----DGESFSGSPLARASKEAGGSCPGS 266
Query: 173 R-PGG-------GAASPLPAPLLASRPRPRGRCAPDGAQAGVGASRLRRRRAPSGTLNGP 224
PGG G+ASPL + + + G AP G+G R+R P L
Sbjct: 267 AGPGGGGEEDSPGSASPLGSESGSEADKEEGEAAP---APGLGGGSGPRQRTPLDILTRV 323
Query: 225 YAQDKHGL 232
+ + G+
Sbjct: 324 FPGHRRGV 331
>gi|239756937 PREDICTED: hypothetical protein [Homo sapiens]
Length = 294
Score = 40.8 bits (94), Expect = 0.001
Identities = 39/114 (34%), Positives = 50/114 (43%), Gaps = 15/114 (13%)
Query: 114 PHPPR--RASPRHAPAAAGGVSMGPSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPG 171
P PPR R S RH AG + GP G++ G+R + R RARG + PG
Sbjct: 64 PFPPRPERPSRRHR---AGCGAHGPGSRGRERRR----GSRDPPAGPVARARARGRSAPG 116
Query: 172 D-RPGGGAASPLPAPLLASRPRPRGRCAPDGAQAGVGAS-----RLRRRRAPSG 219
+P GAA P AP A P + +G+S RL R RA +G
Sbjct: 117 SAQPASGAAGPAAAPEAAPPAWDPATLPPSRKRNSLGSSPLHPVRLGRVRAHAG 170
>gi|150170699 kinesin family member 26A [Homo sapiens]
Length = 1882
Score = 40.8 bits (94), Expect = 0.001
Identities = 56/207 (27%), Positives = 80/207 (38%), Gaps = 39/207 (18%)
Query: 10 AGPKASPLRPSLSPTRLALRAQAQAAQGPWPDSRSRGGQVSGVTRGEKSCWKTLVGCREL 69
+ P ++P +++P R+ A + + P P SR+ + + K R
Sbjct: 1375 SSPASAPPH-AVNPARVGAAAVLRGEEEPRPSSRADHSVPRATSSLKARASKVEAAHRLA 1433
Query: 70 VTPRLSRPETRACSARDPDQEPGSLPR-LSQLGQSWRXXXXXXXGPHPPRRASPRHAPAA 128
L R E A S+ + PG PR + +LG PP +SP H PA
Sbjct: 1434 GHASLERYEGLAHSSSKGREAPGRPPRAVPKLGV-------------PP--SSPTHGPAP 1478
Query: 129 A----GGVSMG---PSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPGDRPGGGAASP 181
A ++G P GG G + GG+RA G + +V G PGG A P
Sbjct: 1479 ACRSGAAKAVGAPKPPVGGGKGRGLVAGGSRALGPSV----KLSTASVTGRSPGGPVAGP 1534
Query: 182 LPAPLLASRPRPRGRCAPD-GAQAGVG 207
AP R P GA+AG G
Sbjct: 1535 RAAP----------RAGPSVGAKAGRG 1551
Score = 28.9 bits (63), Expect = 5.4
Identities = 33/100 (33%), Positives = 36/100 (36%), Gaps = 14/100 (14%)
Query: 114 PHPPRRASPRHA---PAAAGGVSMGPSPGGKDG-----GAFIWGGARAGGG---EALTRK 162
P PP ASPR A P AA P G A +WG R E L +
Sbjct: 878 PSPPEAASPRKAVGTPMAASTPRGSSGPDTHQGTPEPCKAIVWGDQREDSSAWPELLVPE 937
Query: 163 RARGGAVPGDRPGGGAASPLPAPLLASR-PRPRGRCAPDG 201
+A G RP A P P L A R P G DG
Sbjct: 938 KA--AVSGGRRPLPSPAPPPPQLLEACRAPEEPGGGGTDG 975
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 40.8 bits (94), Expect = 0.001
Identities = 40/151 (26%), Positives = 52/151 (34%), Gaps = 18/151 (11%)
Query: 113 GPHPPRRASPRHAPAAAGGVSMGPSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPGD 172
GP PP P+ P G GP P GK G G+ ++ G G
Sbjct: 171 GPPPPP-GKPQGPPPQGGKKPQGPPPPGKPQGP-------PPQGDKSRSSQSPPGKPQGP 222
Query: 173 RPGGG--AASPLPAPLLASRPRPRGRCAPDG--------AQAGVGASRLRRRRAPSGTLN 222
P GG P P P P P+G P G G S+ + R+P G
Sbjct: 223 PPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQ 282
Query: 223 GPYAQDKHGLNQVHAPAGDALTEVRTAVPGQ 253
GP Q+ + PAG + + GQ
Sbjct: 283 GPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQ 313
Score = 36.6 bits (83), Expect = 0.026
Identities = 39/135 (28%), Positives = 45/135 (33%), Gaps = 20/135 (14%)
Query: 113 GPHPPRRASPRHAPAAAGGVSMGPSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPGD 172
GP PP P+ P G GP P GK G G+ R+ G G
Sbjct: 49 GPPPPP-GKPQGPPPQGGNKPQGPPPPGKPQGP-------PPQGDKSRSPRSPPGKPQGP 100
Query: 173 RPGGG--AASPLPAPLLASRPRPRGRCAPDGAQ-------AGVGASRLRRRRAPSGTLNG 223
P GG P P P P P+G P G + R R+P G G
Sbjct: 101 PPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQG 160
Query: 224 PYAQDKHGLNQVHAP 238
P Q G NQ P
Sbjct: 161 PPPQ---GGNQPQGP 172
Score = 31.2 bits (69), Expect = 1.1
Identities = 25/85 (29%), Positives = 31/85 (36%), Gaps = 6/85 (7%)
Query: 113 GPHPPRRASPRHAPAAAGGVSMGPSPGGKDGGAFIWGG-----ARAGGGEALTRKRARGG 167
GP PP P+ P G GP P GK G GG AR+ G+ + G
Sbjct: 232 GPPPPP-GKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGN 290
Query: 168 AVPGDRPGGGAASPLPAPLLASRPR 192
G P G P A +P+
Sbjct: 291 NPQGPPPPAGGNPQQPQAPPAGQPQ 315
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 40.4 bits (93), Expect = 0.002
Identities = 44/144 (30%), Positives = 53/144 (36%), Gaps = 27/144 (18%)
Query: 114 PHPPRRASPRHAPAAAG--GVSMGPSP---GGKDGGAFIWG--------GARAG----GG 156
P PP + P AAG G P P GKDG A + G GA+ GG
Sbjct: 999 PGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGG 1058
Query: 157 EALTRKRARGGAVPGDRPGGGAASPLPAPLLASRPRPRGRCAPDGAQAGVGASRLRRRRA 216
E G+ PG+R G A P+ P RP P+G P G + G +
Sbjct: 1059 EGPQGPPGPVGS-PGERGSAGTAGPIGLP---GRPGPQGPPGPAGEKGAPG------EKG 1108
Query: 217 PSGTLNGPYAQDKHGLNQVHAPAG 240
P G Q GL PAG
Sbjct: 1109 PQGPAGRDGVQGPVGLPGPAGPAG 1132
Score = 33.5 bits (75), Expect = 0.22
Identities = 42/175 (24%), Positives = 56/175 (32%), Gaps = 13/175 (7%)
Query: 100 LGQSWRXXXXXXXGPHPPRRASPRHAPAAAGGVSMGPSPGGKDGGAFIWGGARAGGGEAL 159
+G + R G + S P GV P P GK G G A GG +
Sbjct: 546 MGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKR---GRPGADGGRGM 602
Query: 160 TRKRARGG--------AVPGDRPGGGAASPLPAPLLASRPRPRGRCAPDGAQAGVGASRL 211
+ G +PGD+ G P P RG G + G +
Sbjct: 603 PGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGP 662
Query: 212 RRRRAPSGTLNGPYAQDKHGLNQVHAPAGDALTEVRTAVPGQVKPRTLGPKNLTG 266
R P GT P G++ P G+ + PGQ GP+ L G
Sbjct: 663 RGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQ--QGNPGPQGLPG 715
Score = 33.5 bits (75), Expect = 0.22
Identities = 46/181 (25%), Positives = 58/181 (32%), Gaps = 37/181 (20%)
Query: 116 PPRRASPRHAPAAAG-----GVSMGPSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVP 170
PP P+ P G G P P G+DG GG + G+ P
Sbjct: 1310 PPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGV----GGDKGEDGDP---------GQP 1356
Query: 171 GDRPGGGAASPLPAPLLASRPRPRGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKH 230
G G A P P P G+ P GA G + + +G P K
Sbjct: 1357 GPPGPSGEAGP---------PGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPP---GKT 1404
Query: 231 GLNQVHAPAGDALTEVRTAVPGQVKPRTL-------GPKNLTGTPCLMKLRTARCASSES 283
G PAG E +PG V + L GP G P L L+ + E
Sbjct: 1405 GPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEK 1464
Query: 284 G 284
G
Sbjct: 1465 G 1465
Score = 31.2 bits (69), Expect = 1.1
Identities = 38/154 (24%), Positives = 46/154 (29%), Gaps = 16/154 (10%)
Query: 117 PRRASPRHAPAAAGGVSMGPSPGGKDGGAFIWGGARAGGGEALTRKRARGG--AVPGDRP 174
PR P G + P P G+ G G G + G PG
Sbjct: 818 PRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANG 877
Query: 175 GGGAASPLPAPLLASRPRPRGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQ 234
GA +A +P PRG+ P G + GA + P GT G G
Sbjct: 878 EKGARG------VAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERG 931
Query: 235 VHAPAGDALTEVRTAVPGQVKPRTLGPKNLTGTP 268
P G PG P GP G P
Sbjct: 932 PQGPQGP------VGFPGPKGPP--GPPGKDGLP 957
Score = 30.8 bits (68), Expect = 1.4
Identities = 46/171 (26%), Positives = 56/171 (32%), Gaps = 21/171 (12%)
Query: 114 PHPPRRASPR--HAPAAAGGVSMGPSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPG 171
P PP P+ P G P P GKDG G G + T GG V G
Sbjct: 924 PGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVV-G 982
Query: 172 DRPGGGAASPLPAPLLASRPRPRGR------CAPDGAQAGVGASRLRRRRAPSGTLNG-- 223
+ G P+ P P G +GA+ G + + P+G L G
Sbjct: 983 PQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAG-LRGFP 1041
Query: 224 -----PYAQDKHGLNQVHAPAGDALTEVRTAVPGQ-VKPRTLGPKNLTGTP 268
P AQ GL P G PG+ T GP L G P
Sbjct: 1042 GERGLPGAQGAPGLKGGEGPQG---PPGPVGSPGERGSAGTAGPIGLPGRP 1089
Score = 30.0 bits (66), Expect = 2.4
Identities = 40/140 (28%), Positives = 48/140 (34%), Gaps = 11/140 (7%)
Query: 136 PSPGGKDGGAFIWG--GARAGGGEALTRKRARGGAVPG--DRPGGGAASPLPAPLLASRP 191
P P G DG G G R GEA R PG +PG P P
Sbjct: 636 PGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGP--KGNM 693
Query: 192 RPRGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQV---HAPAGDALTEVRT 248
P+G P G Q G L + P G Q K GL + P G E ++
Sbjct: 694 GPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQS 753
Query: 249 AVPGQVKPRTLGPKNLTGTP 268
G + P GP+ G P
Sbjct: 754 GEKGALGPP--GPQGPIGYP 771
Score = 30.0 bits (66), Expect = 2.4
Identities = 47/185 (25%), Positives = 59/185 (31%), Gaps = 15/185 (8%)
Query: 90 EPGSLPRLSQLGQSWRXXXXXXXGPH-PPRRASPRHAPAAAGGVSMGPSPGGKDGGAFIW 148
E G + + GQ GP PP P AP AGG P P G+ G
Sbjct: 1136 EDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGE-PGPRGQQGMFGQK 1194
Query: 149 G--GARAGGGEALTRKRARGGAVPGDRPGGGAASPLPAPLLASRPRPRGRCAPDGAQ--- 203
G GAR G PG++ G P+ P P+G DG Q
Sbjct: 1195 GDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPP 1254
Query: 204 AGVGASRLRRRRAPSGTLNGPYAQDKHGLNQVHAPAGDALTEVRTAVPGQVKPRTLGPKN 263
VG+ + G P + G V P G+ + PG GP
Sbjct: 1255 GSVGSVGGVGEKGEPGEAGNPGPPGEAG---VGGPKGERGEKGEAGPPG-----AAGPPG 1306
Query: 264 LTGTP 268
G P
Sbjct: 1307 AKGPP 1311
Score = 29.6 bits (65), Expect = 3.1
Identities = 43/181 (23%), Positives = 56/181 (30%), Gaps = 12/181 (6%)
Query: 88 DQEPGSLPRLSQLGQSWRXXXXXXXGPHPPRRASPRHAPAAAGGVSMGPSPGGKDGGAFI 147
D +PG G++ GP A R A G + P GK G
Sbjct: 1350 DGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGP 1409
Query: 148 WGGARAGGGEALTRKRARGGAVPGDRPGGGAASPLPAPLLASRPRPRGRCAPDGAQAGVG 207
G A G E L RG P G A+ P P P G G + G
Sbjct: 1410 QGPAGKPGPEGL-----RGIPGPVGEQGLPGAAGQDGP-----PGPMGPPGLPGLKGDPG 1459
Query: 208 ASRLRRRRAPSGTLNGPYAQDKHGLNQVHAPAGDALTEVRTAVPGQVKPRTLGPKNLTGT 267
+ + G + P Q + G + G + +PG P LGP G
Sbjct: 1460 SKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGP--LGPPGPPGL 1517
Query: 268 P 268
P
Sbjct: 1518 P 1518
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 40.4 bits (93), Expect = 0.002
Identities = 44/144 (30%), Positives = 53/144 (36%), Gaps = 27/144 (18%)
Query: 114 PHPPRRASPRHAPAAAG--GVSMGPSP---GGKDGGAFIWG--------GARAG----GG 156
P PP + P AAG G P P GKDG A + G GA+ GG
Sbjct: 948 PGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGG 1007
Query: 157 EALTRKRARGGAVPGDRPGGGAASPLPAPLLASRPRPRGRCAPDGAQAGVGASRLRRRRA 216
E G+ PG+R G A P+ P RP P+G P G + G +
Sbjct: 1008 EGPQGPPGPVGS-PGERGSAGTAGPIGLP---GRPGPQGPPGPAGEKGAPG------EKG 1057
Query: 217 PSGTLNGPYAQDKHGLNQVHAPAG 240
P G Q GL PAG
Sbjct: 1058 PQGPAGRDGVQGPVGLPGPAGPAG 1081
Score = 33.5 bits (75), Expect = 0.22
Identities = 42/175 (24%), Positives = 56/175 (32%), Gaps = 13/175 (7%)
Query: 100 LGQSWRXXXXXXXGPHPPRRASPRHAPAAAGGVSMGPSPGGKDGGAFIWGGARAGGGEAL 159
+G + R G + S P GV P P GK G G A GG +
Sbjct: 495 MGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKR---GRPGADGGRGM 551
Query: 160 TRKRARGG--------AVPGDRPGGGAASPLPAPLLASRPRPRGRCAPDGAQAGVGASRL 211
+ G +PGD+ G P P RG G + G +
Sbjct: 552 PGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGP 611
Query: 212 RRRRAPSGTLNGPYAQDKHGLNQVHAPAGDALTEVRTAVPGQVKPRTLGPKNLTG 266
R P GT P G++ P G+ + PGQ GP+ L G
Sbjct: 612 RGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQ--QGNPGPQGLPG 664
Score = 33.5 bits (75), Expect = 0.22
Identities = 46/181 (25%), Positives = 58/181 (32%), Gaps = 37/181 (20%)
Query: 116 PPRRASPRHAPAAAG-----GVSMGPSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVP 170
PP P+ P G G P P G+DG GG + G+ P
Sbjct: 1259 PPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGV----GGDKGEDGDP---------GQP 1305
Query: 171 GDRPGGGAASPLPAPLLASRPRPRGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKH 230
G G A P P P G+ P GA G + + +G P K
Sbjct: 1306 GPPGPSGEAGP---------PGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPP---GKT 1353
Query: 231 GLNQVHAPAGDALTEVRTAVPGQVKPRTL-------GPKNLTGTPCLMKLRTARCASSES 283
G PAG E +PG V + L GP G P L L+ + E
Sbjct: 1354 GPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEK 1413
Query: 284 G 284
G
Sbjct: 1414 G 1414
Score = 31.2 bits (69), Expect = 1.1
Identities = 38/154 (24%), Positives = 46/154 (29%), Gaps = 16/154 (10%)
Query: 117 PRRASPRHAPAAAGGVSMGPSPGGKDGGAFIWGGARAGGGEALTRKRARGG--AVPGDRP 174
PR P G + P P G+ G G G + G PG
Sbjct: 767 PRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANG 826
Query: 175 GGGAASPLPAPLLASRPRPRGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQ 234
GA +A +P PRG+ P G + GA + P GT G G
Sbjct: 827 EKGARG------VAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERG 880
Query: 235 VHAPAGDALTEVRTAVPGQVKPRTLGPKNLTGTP 268
P G PG P GP G P
Sbjct: 881 PQGPQGP------VGFPGPKGPP--GPPGKDGLP 906
Score = 30.8 bits (68), Expect = 1.4
Identities = 46/171 (26%), Positives = 56/171 (32%), Gaps = 21/171 (12%)
Query: 114 PHPPRRASPR--HAPAAAGGVSMGPSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPG 171
P PP P+ P G P P GKDG G G + T GG V G
Sbjct: 873 PGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVV-G 931
Query: 172 DRPGGGAASPLPAPLLASRPRPRGR------CAPDGAQAGVGASRLRRRRAPSGTLNG-- 223
+ G P+ P P G +GA+ G + + P+G L G
Sbjct: 932 PQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAG-LRGFP 990
Query: 224 -----PYAQDKHGLNQVHAPAGDALTEVRTAVPGQ-VKPRTLGPKNLTGTP 268
P AQ GL P G PG+ T GP L G P
Sbjct: 991 GERGLPGAQGAPGLKGGEGPQG---PPGPVGSPGERGSAGTAGPIGLPGRP 1038
Score = 30.0 bits (66), Expect = 2.4
Identities = 40/140 (28%), Positives = 48/140 (34%), Gaps = 11/140 (7%)
Query: 136 PSPGGKDGGAFIWG--GARAGGGEALTRKRARGGAVPG--DRPGGGAASPLPAPLLASRP 191
P P G DG G G R GEA R PG +PG P P
Sbjct: 585 PGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGP--KGNM 642
Query: 192 RPRGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQV---HAPAGDALTEVRT 248
P+G P G Q G L + P G Q K GL + P G E ++
Sbjct: 643 GPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQS 702
Query: 249 AVPGQVKPRTLGPKNLTGTP 268
G + P GP+ G P
Sbjct: 703 GEKGALGPP--GPQGPIGYP 720
Score = 30.0 bits (66), Expect = 2.4
Identities = 47/185 (25%), Positives = 59/185 (31%), Gaps = 15/185 (8%)
Query: 90 EPGSLPRLSQLGQSWRXXXXXXXGPH-PPRRASPRHAPAAAGGVSMGPSPGGKDGGAFIW 148
E G + + GQ GP PP P AP AGG P P G+ G
Sbjct: 1085 EDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGE-PGPRGQQGMFGQK 1143
Query: 149 G--GARAGGGEALTRKRARGGAVPGDRPGGGAASPLPAPLLASRPRPRGRCAPDGAQ--- 203
G GAR G PG++ G P+ P P+G DG Q
Sbjct: 1144 GDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPP 1203
Query: 204 AGVGASRLRRRRAPSGTLNGPYAQDKHGLNQVHAPAGDALTEVRTAVPGQVKPRTLGPKN 263
VG+ + G P + G V P G+ + PG GP
Sbjct: 1204 GSVGSVGGVGEKGEPGEAGNPGPPGEAG---VGGPKGERGEKGEAGPPG-----AAGPPG 1255
Query: 264 LTGTP 268
G P
Sbjct: 1256 AKGPP 1260
Score = 29.6 bits (65), Expect = 3.1
Identities = 43/181 (23%), Positives = 56/181 (30%), Gaps = 12/181 (6%)
Query: 88 DQEPGSLPRLSQLGQSWRXXXXXXXGPHPPRRASPRHAPAAAGGVSMGPSPGGKDGGAFI 147
D +PG G++ GP A R A G + P GK G
Sbjct: 1299 DGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGP 1358
Query: 148 WGGARAGGGEALTRKRARGGAVPGDRPGGGAASPLPAPLLASRPRPRGRCAPDGAQAGVG 207
G A G E L RG P G A+ P P P G G + G
Sbjct: 1359 QGPAGKPGPEGL-----RGIPGPVGEQGLPGAAGQDGP-----PGPMGPPGLPGLKGDPG 1408
Query: 208 ASRLRRRRAPSGTLNGPYAQDKHGLNQVHAPAGDALTEVRTAVPGQVKPRTLGPKNLTGT 267
+ + G + P Q + G + G + +PG P LGP G
Sbjct: 1409 SKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGP--LGPPGPPGL 1466
Query: 268 P 268
P
Sbjct: 1467 P 1467
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 40.4 bits (93), Expect = 0.002
Identities = 44/144 (30%), Positives = 53/144 (36%), Gaps = 27/144 (18%)
Query: 114 PHPPRRASPRHAPAAAG--GVSMGPSP---GGKDGGAFIWG--------GARAG----GG 156
P PP + P AAG G P P GKDG A + G GA+ GG
Sbjct: 987 PGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGG 1046
Query: 157 EALTRKRARGGAVPGDRPGGGAASPLPAPLLASRPRPRGRCAPDGAQAGVGASRLRRRRA 216
E G+ PG+R G A P+ P RP P+G P G + G +
Sbjct: 1047 EGPQGPPGPVGS-PGERGSAGTAGPIGLP---GRPGPQGPPGPAGEKGAPG------EKG 1096
Query: 217 PSGTLNGPYAQDKHGLNQVHAPAG 240
P G Q GL PAG
Sbjct: 1097 PQGPAGRDGVQGPVGLPGPAGPAG 1120
Score = 33.5 bits (75), Expect = 0.22
Identities = 42/175 (24%), Positives = 56/175 (32%), Gaps = 13/175 (7%)
Query: 100 LGQSWRXXXXXXXGPHPPRRASPRHAPAAAGGVSMGPSPGGKDGGAFIWGGARAGGGEAL 159
+G + R G + S P GV P P GK G G A GG +
Sbjct: 534 MGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKR---GRPGADGGRGM 590
Query: 160 TRKRARGG--------AVPGDRPGGGAASPLPAPLLASRPRPRGRCAPDGAQAGVGASRL 211
+ G +PGD+ G P P RG G + G +
Sbjct: 591 PGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGP 650
Query: 212 RRRRAPSGTLNGPYAQDKHGLNQVHAPAGDALTEVRTAVPGQVKPRTLGPKNLTG 266
R P GT P G++ P G+ + PGQ GP+ L G
Sbjct: 651 RGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQ--QGNPGPQGLPG 703
Score = 33.5 bits (75), Expect = 0.22
Identities = 46/181 (25%), Positives = 58/181 (32%), Gaps = 37/181 (20%)
Query: 116 PPRRASPRHAPAAAG-----GVSMGPSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVP 170
PP P+ P G G P P G+DG GG + G+ P
Sbjct: 1298 PPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGV----GGDKGEDGDP---------GQP 1344
Query: 171 GDRPGGGAASPLPAPLLASRPRPRGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKH 230
G G A P P P G+ P GA G + + +G P K
Sbjct: 1345 GPPGPSGEAGP---------PGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPP---GKT 1392
Query: 231 GLNQVHAPAGDALTEVRTAVPGQVKPRTL-------GPKNLTGTPCLMKLRTARCASSES 283
G PAG E +PG V + L GP G P L L+ + E
Sbjct: 1393 GPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEK 1452
Query: 284 G 284
G
Sbjct: 1453 G 1453
Score = 31.2 bits (69), Expect = 1.1
Identities = 38/154 (24%), Positives = 46/154 (29%), Gaps = 16/154 (10%)
Query: 117 PRRASPRHAPAAAGGVSMGPSPGGKDGGAFIWGGARAGGGEALTRKRARGG--AVPGDRP 174
PR P G + P P G+ G G G + G PG
Sbjct: 806 PRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANG 865
Query: 175 GGGAASPLPAPLLASRPRPRGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQ 234
GA +A +P PRG+ P G + GA + P GT G G
Sbjct: 866 EKGARG------VAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERG 919
Query: 235 VHAPAGDALTEVRTAVPGQVKPRTLGPKNLTGTP 268
P G PG P GP G P
Sbjct: 920 PQGPQGP------VGFPGPKGPP--GPPGKDGLP 945
Score = 30.8 bits (68), Expect = 1.4
Identities = 46/171 (26%), Positives = 56/171 (32%), Gaps = 21/171 (12%)
Query: 114 PHPPRRASPR--HAPAAAGGVSMGPSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPG 171
P PP P+ P G P P GKDG G G + T GG V G
Sbjct: 912 PGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVV-G 970
Query: 172 DRPGGGAASPLPAPLLASRPRPRGR------CAPDGAQAGVGASRLRRRRAPSGTLNG-- 223
+ G P+ P P G +GA+ G + + P+G L G
Sbjct: 971 PQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAG-LRGFP 1029
Query: 224 -----PYAQDKHGLNQVHAPAGDALTEVRTAVPGQ-VKPRTLGPKNLTGTP 268
P AQ GL P G PG+ T GP L G P
Sbjct: 1030 GERGLPGAQGAPGLKGGEGPQG---PPGPVGSPGERGSAGTAGPIGLPGRP 1077
Score = 30.0 bits (66), Expect = 2.4
Identities = 40/140 (28%), Positives = 48/140 (34%), Gaps = 11/140 (7%)
Query: 136 PSPGGKDGGAFIWG--GARAGGGEALTRKRARGGAVPG--DRPGGGAASPLPAPLLASRP 191
P P G DG G G R GEA R PG +PG P P
Sbjct: 624 PGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGP--KGNM 681
Query: 192 RPRGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQV---HAPAGDALTEVRT 248
P+G P G Q G L + P G Q K GL + P G E ++
Sbjct: 682 GPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQS 741
Query: 249 AVPGQVKPRTLGPKNLTGTP 268
G + P GP+ G P
Sbjct: 742 GEKGALGPP--GPQGPIGYP 759
Score = 30.0 bits (66), Expect = 2.4
Identities = 47/185 (25%), Positives = 59/185 (31%), Gaps = 15/185 (8%)
Query: 90 EPGSLPRLSQLGQSWRXXXXXXXGPH-PPRRASPRHAPAAAGGVSMGPSPGGKDGGAFIW 148
E G + + GQ GP PP P AP AGG P P G+ G
Sbjct: 1124 EDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGE-PGPRGQQGMFGQK 1182
Query: 149 G--GARAGGGEALTRKRARGGAVPGDRPGGGAASPLPAPLLASRPRPRGRCAPDGAQ--- 203
G GAR G PG++ G P+ P P+G DG Q
Sbjct: 1183 GDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPP 1242
Query: 204 AGVGASRLRRRRAPSGTLNGPYAQDKHGLNQVHAPAGDALTEVRTAVPGQVKPRTLGPKN 263
VG+ + G P + G V P G+ + PG GP
Sbjct: 1243 GSVGSVGGVGEKGEPGEAGNPGPPGEAG---VGGPKGERGEKGEAGPPG-----AAGPPG 1294
Query: 264 LTGTP 268
G P
Sbjct: 1295 AKGPP 1299
Score = 29.6 bits (65), Expect = 3.1
Identities = 43/181 (23%), Positives = 56/181 (30%), Gaps = 12/181 (6%)
Query: 88 DQEPGSLPRLSQLGQSWRXXXXXXXGPHPPRRASPRHAPAAAGGVSMGPSPGGKDGGAFI 147
D +PG G++ GP A R A G + P GK G
Sbjct: 1338 DGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGP 1397
Query: 148 WGGARAGGGEALTRKRARGGAVPGDRPGGGAASPLPAPLLASRPRPRGRCAPDGAQAGVG 207
G A G E L RG P G A+ P P P G G + G
Sbjct: 1398 QGPAGKPGPEGL-----RGIPGPVGEQGLPGAAGQDGP-----PGPMGPPGLPGLKGDPG 1447
Query: 208 ASRLRRRRAPSGTLNGPYAQDKHGLNQVHAPAGDALTEVRTAVPGQVKPRTLGPKNLTGT 267
+ + G + P Q + G + G + +PG P LGP G
Sbjct: 1448 SKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGP--LGPPGPPGL 1505
Query: 268 P 268
P
Sbjct: 1506 P 1506
>gi|169167740 PREDICTED: hypothetical protein [Homo sapiens]
Length = 302
Score = 40.4 bits (93), Expect = 0.002
Identities = 54/214 (25%), Positives = 69/214 (32%), Gaps = 15/214 (7%)
Query: 12 PKASPLRPSLSPTRLALRAQAQAAQGPWPDSRSRGGQVSGVTRGEKSCWKTLVGCRELVT 71
P P S T L +A A GP R+ SG +
Sbjct: 69 PLIPATEPQSSTTFPGLSTEAPAPAGPGTTRRAGHMPASGQVEARND-HRPPGRAPPRHA 127
Query: 72 PRLSRPETR------ACSARDPDQEPGSLPRLSQLGQSWRXXXXXXXGPHPPRRASPRHA 125
PR RP R A A++P P P G R HP R P
Sbjct: 128 PRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGP-GTRSRGPPRQARSQHPERSPEPEGR 186
Query: 126 PAAAGGVSMGPSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPGDRPGGGAASPLPAP 185
A + P PG + G R+G G+ R GGA G RP P+P
Sbjct: 187 GNHARKPAALPVPGRFPIRPVL--GGRSGPGDRSLRSAHLGGAGQG-RPWTARPPPIPH- 242
Query: 186 LLASRPRPRGRCAPDGAQAGVGASRLRRRRAPSG 219
+RPRP+ C+ G +G + SG
Sbjct: 243 ---TRPRPKCACSAPGTNRNLGPRVAGANHSASG 273
>gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo
sapiens]
Length = 400
Score = 40.4 bits (93), Expect = 0.002
Identities = 38/110 (34%), Positives = 45/110 (40%), Gaps = 20/110 (18%)
Query: 126 PAAAGGVSMGPSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPGDRPGGGAASP---- 181
PA AGG G GGK+ A +W GA GGGE R A A P P AA
Sbjct: 170 PAPAGGKGEG---GGKES-AVLWKGAE-GGGEKGNRNMA---AAPLGDPAREAAQAQTGL 221
Query: 182 --------LPAPLLASRPRPRGRCAPDGAQAGVGASRLRRRRAPSGTLNG 223
+P P L S P PR RC ++ VGA+ + A G
Sbjct: 222 RRRRPLELVPRPALPSAPSPRIRCFLAPGRSRVGAALTEEQAAGEAAARG 271
>gi|239743688 PREDICTED: hypothetical protein XP_002342946 [Homo
sapiens]
Length = 400
Score = 40.4 bits (93), Expect = 0.002
Identities = 38/110 (34%), Positives = 45/110 (40%), Gaps = 20/110 (18%)
Query: 126 PAAAGGVSMGPSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPGDRPGGGAASP---- 181
PA AGG G GGK+ A +W GA GGGE R A A P P AA
Sbjct: 170 PAPAGGKGEG---GGKES-AVLWKGAE-GGGEKGNRNMA---AAPLGDPAREAAQAQTGL 221
Query: 182 --------LPAPLLASRPRPRGRCAPDGAQAGVGASRLRRRRAPSGTLNG 223
+P P L S P PR RC ++ VGA+ + A G
Sbjct: 222 RRRRPLELVPRPALPSAPSPRIRCFLAPGRSRVGAALTEEQAAGEAAARG 271
>gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2
preproprotein [Homo sapiens]
Length = 198
Score = 40.0 bits (92), Expect = 0.002
Identities = 41/144 (28%), Positives = 55/144 (38%), Gaps = 15/144 (10%)
Query: 113 GPHPPRRASPRHAPAAAGGVSMGPSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPGD 172
GP PP P+ P G GP P GK G G+ R+ G G
Sbjct: 49 GPPPPP-GKPQGPPPQGGNKPQGPPPPGKPQGP-------PPQGDKSRSPRSPPGKPQGP 100
Query: 173 RPGGGAASPLPAPLLASRPR---PRGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDK 229
P GG P P ++P+ P G+ P G A G S+ + R+P G GP Q+
Sbjct: 101 PPQGGKPQG-PPPQGGNKPQGPPPPGK--PQGPPA-QGGSKSQSARSPPGKPQGPPQQEG 156
Query: 230 HGLNQVHAPAGDALTEVRTAVPGQ 253
+ PAG + + GQ
Sbjct: 157 NNPQGPPPPAGGNPQQPQAPPAGQ 180
Score = 35.0 bits (79), Expect = 0.075
Identities = 30/111 (27%), Positives = 39/111 (35%), Gaps = 6/111 (5%)
Query: 87 PDQEPGSLPRLSQLGQSWRXXXXXXXGPHPPRRASPRHAPAAAGGVSMGPSPGGKDGGAF 146
P +P P +S R GP PP+ P+ P G GP P GK G
Sbjct: 73 PPGKPQGPPPQGDKSRSPRSPPGKPQGP-PPQGGKPQGPPPQGGNKPQGPPPPGKPQGPP 131
Query: 147 IWGG-----ARAGGGEALTRKRARGGAVPGDRPGGGAASPLPAPLLASRPR 192
GG AR+ G+ + G G P G P A +P+
Sbjct: 132 AQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQ 182
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 40.0 bits (92), Expect = 0.002
Identities = 40/126 (31%), Positives = 51/126 (40%), Gaps = 6/126 (4%)
Query: 126 PAAAGGVSMGPSPGGKDGGAFIWGGARAG--GGEALTRKRARGGAVPGDRPGGGAASPLP 183
P A GG G GG GG GGA AG G A+ A A G GGG
Sbjct: 246 PGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSA 305
Query: 184 APLLASRPRPRGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQVHAPAGDAL 243
+ S PR +G G G AS +A +G+ G + Q G NQ + A L
Sbjct: 306 GYGVLSSPRQQGGGMMMGPGGGGAAS---LSKAAAGSAAGGF-QRFAGQNQHPSGATPTL 361
Query: 244 TEVRTA 249
++ T+
Sbjct: 362 NQLLTS 367
Score = 30.8 bits (68), Expect = 1.4
Identities = 29/104 (27%), Positives = 38/104 (36%), Gaps = 4/104 (3%)
Query: 95 PRLSQLGQSWRXXXXXXXGPHPPRRASPRHAPA--AAGGVSMGPSPG-GKDGGAFIWGGA 151
P + G S+ P PP + + A A AAGG G GKD GA +
Sbjct: 370 PMMRSYGGSYPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQQAAAGMGLGKDMGAQYAAAS 429
Query: 152 RAGGGEALTRKRARGGAVPGDRPGGGAASPLPAPLLASRPRPRG 195
A A PG G SP+ P++ RP+ G
Sbjct: 430 PAWAAAQQRSHPAMSPGTPGPTMGRSQGSPMD-PMVMKRPQLYG 472
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 40.0 bits (92), Expect = 0.002
Identities = 40/126 (31%), Positives = 51/126 (40%), Gaps = 6/126 (4%)
Query: 126 PAAAGGVSMGPSPGGKDGGAFIWGGARAG--GGEALTRKRARGGAVPGDRPGGGAASPLP 183
P A GG G GG GG GGA AG G A+ A A G GGG
Sbjct: 246 PGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSA 305
Query: 184 APLLASRPRPRGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQVHAPAGDAL 243
+ S PR +G G G AS +A +G+ G + Q G NQ + A L
Sbjct: 306 GYGVLSSPRQQGGGMMMGPGGGGAAS---LSKAAAGSAAGGF-QRFAGQNQHPSGATPTL 361
Query: 244 TEVRTA 249
++ T+
Sbjct: 362 NQLLTS 367
Score = 30.8 bits (68), Expect = 1.4
Identities = 29/104 (27%), Positives = 38/104 (36%), Gaps = 4/104 (3%)
Query: 95 PRLSQLGQSWRXXXXXXXGPHPPRRASPRHAPA--AAGGVSMGPSPG-GKDGGAFIWGGA 151
P + G S+ P PP + + A A AAGG G GKD GA +
Sbjct: 370 PMMRSYGGSYPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQQAAAGMGLGKDMGAQYAAAS 429
Query: 152 RAGGGEALTRKRARGGAVPGDRPGGGAASPLPAPLLASRPRPRG 195
A A PG G SP+ P++ RP+ G
Sbjct: 430 PAWAAAQQRSHPAMSPGTPGPTMGRSQGSPMD-PMVMKRPQLYG 472
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 40.0 bits (92), Expect = 0.002
Identities = 40/126 (31%), Positives = 51/126 (40%), Gaps = 6/126 (4%)
Query: 126 PAAAGGVSMGPSPGGKDGGAFIWGGARAG--GGEALTRKRARGGAVPGDRPGGGAASPLP 183
P A GG G GG GG GGA AG G A+ A A G GGG
Sbjct: 246 PGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSA 305
Query: 184 APLLASRPRPRGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQVHAPAGDAL 243
+ S PR +G G G AS +A +G+ G + Q G NQ + A L
Sbjct: 306 GYGVLSSPRQQGGGMMMGPGGGGAAS---LSKAAAGSAAGGF-QRFAGQNQHPSGATPTL 361
Query: 244 TEVRTA 249
++ T+
Sbjct: 362 NQLLTS 367
Score = 30.8 bits (68), Expect = 1.4
Identities = 29/104 (27%), Positives = 38/104 (36%), Gaps = 4/104 (3%)
Query: 95 PRLSQLGQSWRXXXXXXXGPHPPRRASPRHAPA--AAGGVSMGPSPG-GKDGGAFIWGGA 151
P + G S+ P PP + + A A AAGG G GKD GA +
Sbjct: 370 PMMRSYGGSYPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQQAAAGMGLGKDMGAQYAAAS 429
Query: 152 RAGGGEALTRKRARGGAVPGDRPGGGAASPLPAPLLASRPRPRG 195
A A PG G SP+ P++ RP+ G
Sbjct: 430 PAWAAAQQRSHPAMSPGTPGPTMGRSQGSPMD-PMVMKRPQLYG 472
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 39.7 bits (91), Expect = 0.003
Identities = 57/209 (27%), Positives = 69/209 (33%), Gaps = 29/209 (13%)
Query: 91 PGSLPRLSQLGQSWRXXXXXXXGPHPPRRASPRHAPAAAGGVSMGPS-PGGKDGGAFIWG 149
PG++ G + GP P A PR +P G V GP+ P G G A G
Sbjct: 678 PGAVGAPGPAGATGDRGEAGAAGPAGP--AGPRGSPGERGEV--GPAGPNGFAGPAGAAG 733
Query: 150 GARAGGGEALTRKRARGGAVPGDRPGG--GAASPLPAPLLASRPRPRGRCAPDGAQAGVG 207
A G + G V P G G A P P A RG P G G
Sbjct: 734 QPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGS---RGDGGPPGMTGFPG 790
Query: 208 ASRLRRRRAPSGTLNGPYAQDKHGLNQVHAPAGDALTEVRTAVPGQV------------- 254
A+ PSG P G + P GD RT G V
Sbjct: 791 AAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSG 850
Query: 255 ------KPRTLGPKNLTGTPCLMKLRTAR 277
P T GP+ L G P ++ L +R
Sbjct: 851 EAGTAGPPGTPGPQGLLGAPGILGLPGSR 879
Score = 35.0 bits (79), Expect = 0.075
Identities = 42/157 (26%), Positives = 53/157 (33%), Gaps = 26/157 (16%)
Query: 114 PHPPRRASPRHAPAAAG--GVSMGPSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPG 171
P P P A A G G+ P P G G + G + G + G G
Sbjct: 324 PGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGK-RG 382
Query: 172 DRPGGGAASPLPAPLLASRPRPRGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHG 231
G+A P P L P RG DG +G R P+G
Sbjct: 383 PNGEAGSAGPPGPPGLRGSPGSRGLPGADGRAGVMGPPGSRGASGPAG------------ 430
Query: 232 LNQVHAPAGDALTEVRTAVPGQVKPRTLGPKNLTGTP 268
V P GDA PG+ P +GP+ L G+P
Sbjct: 431 ---VRGPNGDA------GRPGE--PGLMGPRGLPGSP 456
Score = 35.0 bits (79), Expect = 0.075
Identities = 41/166 (24%), Positives = 50/166 (30%), Gaps = 5/166 (3%)
Query: 81 ACSARDPDQEPGSLPRLSQLGQSWRXXXXXXXGPHPPRRASPRHAPAAAGGVSMGPSPGG 140
A AR EPG + G GP P + P G + P P G
Sbjct: 338 ATGARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPG 397
Query: 141 KDGGAFIWGGARAGG-GEALTRKRARGGAVPGD--RPGGGAASPLPAPLLASR--PRPRG 195
G G A G + +RG + P P G A P L+ R P G
Sbjct: 398 LRGSPGSRGLPGADGRAGVMGPPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRGLPGSPG 457
Query: 196 RCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQVHAPAGD 241
P G + VG + R P G G P GD
Sbjct: 458 NIGPAGKEGPVGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGD 503
Score = 34.7 bits (78), Expect = 0.098
Identities = 49/176 (27%), Positives = 59/176 (33%), Gaps = 23/176 (13%)
Query: 116 PPRRASPRHAPAAAGGV-SMGPSPG----GKDGGAFIWGGARAGGGEALT-------RKR 163
PP + P G V + GPS G+ G A I GG G L R
Sbjct: 614 PPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAGIPGGKGEKGEPGLRGEIGNPGRDG 673
Query: 164 ARG--GAV--------PGDRPGGGAASPLPAPLLASRPRPRGRCAPDGAQAGVGASRLRR 213
ARG GAV GDR GAA P P RG P G G +
Sbjct: 674 ARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAG 733
Query: 214 RRAPSGTLNGPYAQDKHGLNQVHAPAGDALTEVRTAVPGQVKPR-TLGPKNLTGTP 268
+ G + ++G+ P G A PG R GP +TG P
Sbjct: 734 QPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGMTGFP 789
Score = 32.7 bits (73), Expect = 0.37
Identities = 49/187 (26%), Positives = 62/187 (33%), Gaps = 12/187 (6%)
Query: 91 PGSLPRLSQLGQSWRXXXXXXXGPHPPRRASPRHAPAAAGGVSMGPSPGGKDGGAFIWGG 150
PG R+ G + GP P A P + A G P P G+ G G
Sbjct: 219 PGERGRVGAPGPAGARGSDGSVGPVGP--AGPIGS-AGPPGFPGAPGPKGEIGAVGNAGP 275
Query: 151 ARAGGGEALTRKRARGGAV-PGDRPGG----GAASPLPAPLLASRPR---PRGRCAPDGA 202
A G G V P PG GA P +A P PRG P GA
Sbjct: 276 AGPAGPRGEVGLPGLSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGA 335
Query: 203 QAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQVHAPAGDALTEVRTAVPGQV-KPRTLGP 261
GA L P+G+ + + G P G + E + G+ GP
Sbjct: 336 AGATGARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGP 395
Query: 262 KNLTGTP 268
L G+P
Sbjct: 396 PGLRGSP 402
Score = 32.0 bits (71), Expect = 0.63
Identities = 32/107 (29%), Positives = 35/107 (32%), Gaps = 10/107 (9%)
Query: 114 PHPPRRASPRHAPAAAGGVSMGPSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPGDR 173
P PP A GV +GP P G G G A A G + G PG
Sbjct: 68 PGPPGLGGNFAAQYDGKGVGLGPGPMGLMGPRGPPGAAGAPGPQGFQGPAGEPGE-PGQT 126
Query: 174 PGGGAASPLPAPLLA---------SRPRPRGRCAPDGAQAGVGASRL 211
GA P P A RP RG P GA+ G L
Sbjct: 127 GPAGARGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGL 173
Score = 31.2 bits (69), Expect = 1.1
Identities = 40/138 (28%), Positives = 46/138 (33%), Gaps = 13/138 (9%)
Query: 120 ASPRHAPAAAG--GVSMGPSPGGKDGGAFIWGGARAGGGEALTRKRARGGAV--PGDRPG 175
A R AP G G P P G GG G G + L G V PG+R
Sbjct: 516 AGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPPGPPGFQGLPGPSGPAGEVGKPGERGL 575
Query: 176 GGAASPLPAPLLASRPRPRGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQV 235
G LP P PRG P G G + R PSG P G V
Sbjct: 576 HGEFG-LPGPA-----GPRGERGPPGESGAAGPTGPIGSRGPSGP---PGPDGNKGEPGV 626
Query: 236 HAPAGDALTEVRTAVPGQ 253
G A + +PG+
Sbjct: 627 VGAVGTAGPSGPSGLPGE 644
Score = 29.6 bits (65), Expect = 3.1
Identities = 24/95 (25%), Positives = 33/95 (34%), Gaps = 1/95 (1%)
Query: 175 GGGAASPLPAPLLASRPRPRGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQ 234
GG A+ + P P G P G GA + + P+G P G
Sbjct: 74 GGNFAAQYDGKGVGLGPGPMGLMGPRGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGARG 133
Query: 235 VHAPAGDALTEVRTAVPGQVKPR-TLGPKNLTGTP 268
P G A + PG+ R +GP+ G P
Sbjct: 134 PAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFP 168
Score = 29.6 bits (65), Expect = 3.1
Identities = 40/168 (23%), Positives = 46/168 (27%), Gaps = 12/168 (7%)
Query: 113 GPHPPRRASPRHAPAAAGGVSMGPSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPGD 172
GP P S P G P G G G A G ++ G
Sbjct: 796 GPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTA 855
Query: 173 RPGG--GAASPLPAPLLASRPRPRGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKH 230
P G G L AP + P RG G VG P G P A
Sbjct: 856 GPPGTPGPQGLLGAPGILGLPGSRGERGLPGVAGAVGEPGPLGIAGPPGARGPPGAVGSP 915
Query: 231 GLNQVHAPAGDALTEVRTAVPG----------QVKPRTLGPKNLTGTP 268
G+N AG PG + P +GP G P
Sbjct: 916 GVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGYPGNIGPVGAAGAP 963
>gi|239756124 PREDICTED: hypothetical protein [Homo sapiens]
Length = 348
Score = 39.7 bits (91), Expect = 0.003
Identities = 42/169 (24%), Positives = 59/169 (34%), Gaps = 8/169 (4%)
Query: 72 PRLSRPETRACSARDPDQEPGSL----PR-LSQLGQSWRXXXXXXXGPHPPRRASPRHAP 126
PR P R+ R P P PR L + Q W P R +SPR +
Sbjct: 111 PRRRPPSLRSAVPRIPRLRPERYQLVAPRVLPRTPQRWTRRGVGGRLPQAAR-SSPRGSK 169
Query: 127 AAAGGVSMGPSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPGDRPGGGAASPLPAPL 186
+ PG + G GG GGG + + G P R AS P P
Sbjct: 170 LSGAASPTAIFPGTRGSGR--GGGCNCGGGSCSCCRWSMAGPFPCARRATCLASLSPPPK 227
Query: 187 LASRPRPRGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQV 235
L + P PR A A + + R+ + L+ P+ G + +
Sbjct: 228 LPTAPGPRAAAAAATATSSIQYPRIPLSPPTNCGLSAPFCLGSGGRSSI 276
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.133 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,630,797
Number of Sequences: 37866
Number of extensions: 935515
Number of successful extensions: 6149
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 655
Number of HSP's that attempted gapping in prelim test: 4617
Number of HSP's gapped (non-prelim): 1742
length of query: 284
length of database: 18,247,518
effective HSP length: 101
effective length of query: 183
effective length of database: 14,423,052
effective search space: 2639418516
effective search space used: 2639418516
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.