Guide to the Human Genome
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Name: LOC729506 Sequence: fasta or formatted (302aa) NCBI GI: 113416994
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {302aa} PREDICTED: hypothetical protein
alt prot {302aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.6         32           2
 C cysteine            1.7          5           1
 D aspartate           2.0          6           1
 E glutamate           3.6         11           1
 F phenylalanine       2.6          8           1
 G glycine            10.6         32           2
 H histidine           4.0         12           1
 I isoleucine          2.0          6           1
 K lysine              3.3         10           1
 L leucine             4.6         14           2
 M methionine          2.3          7           1
 N asparagine          2.3          7           1
 P proline            15.2         46           3
 Q glutamine           3.3         10           1
 R arginine           12.9         39           2
 S serine              6.0         18           2
 T threonine           6.0         18           2
 V valine              5.3         16           2
 W tryptophan          1.7          5           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC729506             0.997   PREDICTED: hypothetical protein 
LOC729506             0.995   PREDICTED: hypothetical protein 
FLJ37078              0.049   hypothetical protein LOC222183 
PRB2                  0.044   proline-rich protein BstNI subfamily 2 
PRB3                  0.044   proline-rich protein BstNI subfamily 3 precursor [H...
SRRM1                 0.044   serine/arginine repetitive matrix 1 
SRRM2                 0.044   splicing coactivator subunit SRm300 
PRB4                  0.042   proline-rich protein BstNI subfamily 4 precursor [Ho...
WDR33                 0.042   WD repeat domain 33 isoform 1 
KIAA1522              0.041   hypothetical protein LOC57648 
PRB1                  0.041   proline-rich protein BstNI subfamily 1 isoform 1 pre...
LOC100130360          0.039   PREDICTED: hypothetical protein 
CPSF6                 0.037   cleavage and polyadenylation specific factor 6, 68 ...
LOC100293375          0.037   PREDICTED: hypothetical protein 
PCLO                  0.037   piccolo isoform 2 
PCLO                  0.037   piccolo isoform 1 
OGFR                  0.036   opioid growth factor receptor 
RERE                  0.036   atrophin-1 like protein isoform b 
RERE                  0.036   atrophin-1 like protein isoform a 
RERE                  0.036   atrophin-1 like protein isoform a 
LOC339742             0.036   PREDICTED: hypothetical protein 
COL2A1                0.036   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.036   collagen, type II, alpha 1 isoform 2 precursor [Hom...
CSTF2                 0.036   cleavage stimulation factor subunit 2 
PRAM1                 0.034   PML-RARA regulated adaptor molecule 1 
COL11A2               0.032   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.032   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.032   collagen, type XI, alpha 2 isoform 1 preproprotein ...
SH3BP1                0.032   SH3-domain binding protein 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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