Guide to the Human Genome
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Name: LOC100292541 Sequence: fasta or formatted (348aa) NCBI GI: 239756124
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         33           6
 C cysteine            3.4         12           2
 D aspartate           1.7          6           1
 E glutamate           2.9         10           1
 F phenylalanine       2.3          8           1
 G glycine            11.2         39           3
 H histidine           1.1          4           1
 I isoleucine          1.7          6           1
 K lysine              2.9         10           1
 L leucine             7.2         25           1
 M methionine          0.9          3           1
 N asparagine          1.4          5           1
 P proline            10.9         38           3
 Q glutamine           3.4         12           1
 R arginine           15.2         53           3
 S serine             13.5         47           2
 T threonine           6.0         21           1
 V valine              2.9         10           1
 W tryptophan          0.6          2           1
 Y tyrosine            1.1          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
SRRM2                 0.035   splicing coactivator subunit SRm300 
C15orf56              0.035   hypothetical protein LOC644809 
LOC338758             0.032   PREDICTED: hypothetical protein 
LOC338758             0.032   PREDICTED: hypothetical protein 
LOC338758             0.032   PREDICTED: hypothetical protein 
MAP1S                 0.031   BPY2 interacting protein 1 
C10orf95              0.031   hypothetical protein LOC79946 
APC2                  0.029   adenomatosis polyposis coli 2 
LOC100129571          0.028   PREDICTED: similar to hCG1646049 
LOC100129571          0.028   PREDICTED: similar to hCG1646049 
LOC100129571          0.028   PREDICTED: similar to hCG1646049 
KIAA1522              0.026   hypothetical protein LOC57648 
SRRM1                 0.025   serine/arginine repetitive matrix 1 
LOC728650             0.025   PREDICTED: hypothetical protein 
FLJ37078              0.025   hypothetical protein LOC222183 
LOC100292133          0.023   PREDICTED: hypothetical protein 
LOC100294354          0.023   PREDICTED: hypothetical protein 
LOC100290612          0.023   PREDICTED: hypothetical protein XP_002348127 
KRTAP4-6              0.022   PREDICTED: keratin associated protein 4.6 
LOC100287920          0.022   PREDICTED: hypothetical protein XP_002344198 
LOC644246             0.022   PREDICTED: hypothetical protein LOC644246 
EML3                  0.022   echinoderm microtubule associated protein like 3 [H...
NCKIPSD               0.022   NCK interacting protein with SH3 domain isoform 1 [Ho...
CABLES1               0.022   Cdk5 and Abl enzyme substrate 1 isoform 2 
FBF1                  0.022   Fas (TNFRSF6) binding factor 1 
FLJ22184              0.022   PREDICTED: hypothetical protein FLJ22184 
LOC728650             0.022   PREDICTED: hypothetical protein 
LOC100293268          0.022   PREDICTED: hypothetical protein 
LOC728431             0.022   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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