Search of human proteins with 110618232

Search of human proteins with 110618232

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|110618232 CD1E antigen isoform c precursor [Homo sapiens]
         (290 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|110618232 CD1E antigen isoform c precursor [Homo sapiens]          616   e-177
gi|110618240 CD1E antigen isoform a precursor [Homo sapiens]          562   e-160
gi|110618230 CD1E antigen isoform b precursor [Homo sapiens]          562   e-160
gi|110618234 CD1E antigen isoform d precursor [Homo sapiens]          518   e-147
gi|4502645 CD1B antigen precursor [Homo sapiens]                      298   5e-81
gi|110618224 CD1A antigen precursor [Homo sapiens]                    296   1e-80
gi|4502649 CD1D antigen precursor [Homo sapiens]                      286   1e-77
gi|110618227 CD1C antigen precursor [Homo sapiens]                    281   5e-76
gi|110618238 CD1E antigen isoform f precursor [Homo sapiens]          191   5e-49
gi|110618236 CD1E antigen isoform e precursor [Homo sapiens]          137   8e-33
gi|209862839 Fc fragment of IgG, receptor, transporter, alpha [H...    61   1e-09
gi|4758346 Fc fragment of IgG, receptor, transporter, alpha [Hom...    61   1e-09
gi|4504417 major histocompatibility complex, class I-related [Ho...    55   6e-08
gi|21040349 hemochromatosis protein isoform 7 precursor [Homo sa...    49   7e-06
gi|24797067 major histocompatibility complex, class I, A precurs...    47   2e-05
gi|21040353 hemochromatosis protein isoform 9 precursor [Homo sa...    47   2e-05
gi|4504377 hemochromatosis protein isoform 1 precursor [Homo sap...    47   2e-05
gi|4502337 alpha-2-glycoprotein 1, zinc [Homo sapiens]                 45   7e-05
gi|21040351 hemochromatosis protein isoform 8 precursor [Homo sa...    45   1e-04
gi|149158702 major histocompatibility complex, class I, F isofor...    44   2e-04
gi|149158698 major histocompatibility complex, class I, F isofor...    44   2e-04
gi|21040347 hemochromatosis protein isoform 6 precursor [Homo sa...    44   2e-04
gi|52630342 major histocompatibility complex, class I, C precurs...    43   3e-04
gi|4504415 major histocompatibility complex, class I, G precurso...    43   4e-04
gi|89063265 PREDICTED: similar to MHC class I antigen [Homo sapi...    41   0.001
gi|24797076 major histocompatibility complex, class II, DP beta ...    41   0.001
gi|239748785 PREDICTED: similar to HLA class II histocompatibili...    39   0.004
gi|239740745 PREDICTED: similar to HLA class II histocompatibili...    39   0.004
gi|239740743 PREDICTED: similar to HLA class II histocompatibili...    39   0.004
gi|239740695 PREDICTED: similar to HLA class II histocompatibili...    39   0.004

>gi|110618232 CD1E antigen isoform c precursor [Homo sapiens]
          Length = 290

 Score =  616 bits (1589), Expect = e-177
 Identities = 290/290 (100%), Positives = 290/290 (100%)

Query: 1   MLLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLG 60
           MLLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLG
Sbjct: 1   MLLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLG 60

Query: 61  DLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIQIVQASAGQFQLEYP 120
           DLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIQIVQASAGQFQLEYP
Sbjct: 61  DLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIQIVQASAGQFQLEYP 120

Query: 121 FEIQILAGCRMNAPQIFLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYLDIKE 180
           FEIQILAGCRMNAPQIFLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYLDIKE
Sbjct: 121 FEIQILAGCRMNAPQIFLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYLDIKE 180

Query: 181 ILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYPKPV 240
           ILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYPKPV
Sbjct: 181 ILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYPKPV 240

Query: 241 WVMWMRGEQEQRGTQRGDVLPNADETWWIFHLSHPDLFDCDSYPGHIGCS 290
           WVMWMRGEQEQRGTQRGDVLPNADETWWIFHLSHPDLFDCDSYPGHIGCS
Sbjct: 241 WVMWMRGEQEQRGTQRGDVLPNADETWWIFHLSHPDLFDCDSYPGHIGCS 290


>gi|110618240 CD1E antigen isoform a precursor [Homo sapiens]
          Length = 388

 Score =  562 bits (1449), Expect = e-160
 Identities = 267/269 (99%), Positives = 269/269 (100%)

Query: 1   MLLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLG 60
           MLLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLG
Sbjct: 1   MLLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLG 60

Query: 61  DLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIQIVQASAGQFQLEYP 120
           DLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIQIVQASAGQFQLEYP
Sbjct: 61  DLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIQIVQASAGQFQLEYP 120

Query: 121 FEIQILAGCRMNAPQIFLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYLDIKE 180
           FEIQILAGCRMNAPQIFLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYLDIKE
Sbjct: 121 FEIQILAGCRMNAPQIFLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYLDIKE 180

Query: 181 ILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYPKPV 240
           ILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYPKPV
Sbjct: 181 ILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYPKPV 240

Query: 241 WVMWMRGEQEQRGTQRGDVLPNADETWWI 269
           WVMWMRGEQEQRGTQRGDVLPNADETW++
Sbjct: 241 WVMWMRGEQEQRGTQRGDVLPNADETWYL 269


>gi|110618230 CD1E antigen isoform b precursor [Homo sapiens]
          Length = 376

 Score =  562 bits (1449), Expect = e-160
 Identities = 267/269 (99%), Positives = 269/269 (100%)

Query: 1   MLLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLG 60
           MLLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLG
Sbjct: 1   MLLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLG 60

Query: 61  DLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIQIVQASAGQFQLEYP 120
           DLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIQIVQASAGQFQLEYP
Sbjct: 61  DLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIQIVQASAGQFQLEYP 120

Query: 121 FEIQILAGCRMNAPQIFLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYLDIKE 180
           FEIQILAGCRMNAPQIFLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYLDIKE
Sbjct: 121 FEIQILAGCRMNAPQIFLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYLDIKE 180

Query: 181 ILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYPKPV 240
           ILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYPKPV
Sbjct: 181 ILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYPKPV 240

Query: 241 WVMWMRGEQEQRGTQRGDVLPNADETWWI 269
           WVMWMRGEQEQRGTQRGDVLPNADETW++
Sbjct: 241 WVMWMRGEQEQRGTQRGDVLPNADETWYL 269


>gi|110618234 CD1E antigen isoform d precursor [Homo sapiens]
          Length = 321

 Score =  518 bits (1335), Expect = e-147
 Identities = 247/247 (100%), Positives = 247/247 (100%)

Query: 1   MLLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLG 60
           MLLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLG
Sbjct: 1   MLLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLG 60

Query: 61  DLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIQIVQASAGQFQLEYP 120
           DLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIQIVQASAGQFQLEYP
Sbjct: 61  DLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIQIVQASAGQFQLEYP 120

Query: 121 FEIQILAGCRMNAPQIFLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYLDIKE 180
           FEIQILAGCRMNAPQIFLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYLDIKE
Sbjct: 121 FEIQILAGCRMNAPQIFLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYLDIKE 180

Query: 181 ILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYPKPV 240
           ILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYPKPV
Sbjct: 181 ILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYPKPV 240

Query: 241 WVMWMRG 247
           WVMWMRG
Sbjct: 241 WVMWMRG 247


>gi|4502645 CD1B antigen precursor [Homo sapiens]
          Length = 333

 Score =  298 bits (762), Expect = 5e-81
 Identities = 150/272 (55%), Positives = 189/272 (69%), Gaps = 12/272 (4%)

Query: 1   MLLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLG 60
           MLLL      +  PG N        S H A +   SF ++QTSSF N +WA ++GSGWL 
Sbjct: 1   MLLLPFQLLAVLFPGGN--------SEH-AFQGPTSFHVIQTSSFTNSTWAQTQGSGWLD 51

Query: 61  DLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIQIVQASAGQFQLEYP 120
           DLQ HGWD+  GT  FLKPWS GNFS +E+  L+ +F++Y   F + VQ  AG FQ++YP
Sbjct: 52  DLQIHGWDSDSGTAIFLKPWSKGNFSDKEVAELEEIFRVYIFGFAREVQDFAGDFQMKYP 111

Query: 121 FEIQILAGCRMN---APQIFLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYLD 177
           FEIQ +AGC ++   A   FL  A  G DFLS +  S  PSP  G RAQ  C ++ +Y  
Sbjct: 112 FEIQGIAGCELHSGGAIVSFLRGALGGLDFLSVKNASCVPSPEGGSRAQKFCALIIQYQG 171

Query: 178 IKEILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYP 237
           I E ++ LL  TCPR+L G++ AG+++L+R+VKPEAWLS GPSPGPGRLQLVCHVSGFYP
Sbjct: 172 IMETVRILLYETCPRYLLGVLNAGKADLQRQVKPEAWLSSGPSPGPGRLQLVCHVSGFYP 231

Query: 238 KPVWVMWMRGEQEQRGTQRGDVLPNADETWWI 269
           KPVWVMWMRGEQEQ+GTQ GD+LPNA+ TW++
Sbjct: 232 KPVWVMWMRGEQEQQGTQLGDILPNANWTWYL 263


>gi|110618224 CD1A antigen precursor [Homo sapiens]
          Length = 327

 Score =  296 bits (759), Expect = 1e-80
 Identities = 147/271 (54%), Positives = 188/271 (69%), Gaps = 13/271 (4%)

Query: 3   LLFLLFEGLCC-PGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLGD 61
           +LFLL   L   PG+  A            +E LSF +   +SF NHSW  +  SGWL D
Sbjct: 1   MLFLLLPLLAVLPGDGNAD---------GLKEPLSFHVTWIASFYNHSWKQNLVSGWLSD 51

Query: 62  LQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIQIVQASAGQFQLEYPF 121
           LQTH WD+   TI FL PWS GNFS +E K L++LF++      + ++  A + Q EYPF
Sbjct: 52  LQTHTWDSNSSTIVFLCPWSRGNFSNEEWKELETLFRIRTIRSFEGIRRYAHELQFEYPF 111

Query: 122 EIQILAGCRMNAPQI---FLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYLDI 178
           EIQ+  GC +++ ++   FL +AYQGSDF+SFQ  SW P P AG  A++ CKVLN+    
Sbjct: 112 EIQVTGGCELHSGKVSGSFLQLAYQGSDFVSFQNNSWLPYPVAGNMAKHFCKVLNQNQHE 171

Query: 179 KEILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYPK 238
            +I  +LL  TCPRF+ GL++AG++ L+R+VKPEAWLS GPSPGPG LQLVCHVSGFYPK
Sbjct: 172 NDITHNLLSDTCPRFILGLLDAGKAHLQRQVKPEAWLSHGPSPGPGHLQLVCHVSGFYPK 231

Query: 239 PVWVMWMRGEQEQRGTQRGDVLPNADETWWI 269
           PVWVMWMRGEQEQ+GTQRGD+LP+AD TW++
Sbjct: 232 PVWVMWMRGEQEQQGTQRGDILPSADGTWYL 262


>gi|4502649 CD1D antigen precursor [Homo sapiens]
          Length = 335

 Score =  286 bits (732), Expect = 1e-77
 Identities = 143/270 (52%), Positives = 181/270 (67%), Gaps = 13/270 (4%)

Query: 3   LLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLGDL 62
           LLFLL   L     +   PQ L             R LQ SSFAN SW  ++G  WLG+L
Sbjct: 4   LLFLLLWALLQAWGSAEVPQRL----------FPLRCLQISSFANSSWTRTDGLAWLGEL 53

Query: 63  QTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIQIVQASAGQFQLEYPFE 122
           QTH W     T+R LKPWS G FS Q+ + LQ +F++Y  SF + V+  A   +L YP E
Sbjct: 54  QTHSWSNDSDTVRSLKPWSQGTFSDQQWETLQHIFRVYRSSFTRDVKEFAKMLRLSYPLE 113

Query: 123 IQILAGCRM---NAPQIFLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYLDIK 179
           +Q+ AGC +   NA   F ++A+QG D LSFQG SWEP+  A +      +VLN+    +
Sbjct: 114 LQVSAGCEVHPGNASNNFFHVAFQGKDILSFQGTSWEPTQEAPLWVNLAIQVLNQDKWTR 173

Query: 180 EILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYPKP 239
           E +Q LL  TCP+F++GL+E+G+SELK++VKP+AWLS GPSPGPGRL LVCHVSGFYPKP
Sbjct: 174 ETVQWLLNGTCPQFVSGLLESGKSELKKQVKPKAWLSRGPSPGPGRLLLVCHVSGFYPKP 233

Query: 240 VWVMWMRGEQEQRGTQRGDVLPNADETWWI 269
           VWV WMRGEQEQ+GTQ GD+LPNADETW++
Sbjct: 234 VWVKWMRGEQEQQGTQPGDILPNADETWYL 263


>gi|110618227 CD1C antigen precursor [Homo sapiens]
          Length = 333

 Score =  281 bits (719), Expect = 5e-76
 Identities = 137/273 (50%), Positives = 181/273 (66%), Gaps = 13/273 (4%)

Query: 1   MLLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLG 60
           ML L  L   L  PG + A          A++E +SF ++Q  SF N SWA  +GSGWL 
Sbjct: 1   MLFLQFLLLALLLPGGDNAD---------ASQEHVSFHVIQIFSFVNQSWARGQGSGWLD 51

Query: 61  DLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIQIVQASAGQFQLEYP 120
           +LQTHGWD+  GTI FL  WS GNFS +EL +L+ LF+ Y     + +Q  A Q   +YP
Sbjct: 52  ELQTHGWDSESGTIIFLHNWSKGNFSNEELSDLELLFRFYLFGLTREIQDHASQDYSKYP 111

Query: 121 FEIQILAGCRMNA---PQIFLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLN-RYL 176
           FE+Q+ AGC +++   P+ F  +A+ G D LSFQ  +W PSPG G  AQ++C +LN +Y 
Sbjct: 112 FEVQVKAGCELHSGKSPEGFFQVAFNGLDLLSFQNTTWVPSPGCGSLAQSVCHLLNHQYE 171

Query: 177 DIKEILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFY 236
            + E + +L+  TCPRFL GL++AG+  + R+V+PEAWLS  PS G G+L LVCH SGFY
Sbjct: 172 GVTETVYNLIRSTCPRFLLGLLDAGKMYVHRQVRPEAWLSSRPSLGSGQLLLVCHASGFY 231

Query: 237 PKPVWVMWMRGEQEQRGTQRGDVLPNADETWWI 269
           PKPVWV WMR EQEQ GT+ GD+LPNAD TW++
Sbjct: 232 PKPVWVTWMRNEQEQLGTKHGDILPNADGTWYL 264


>gi|110618238 CD1E antigen isoform f precursor [Homo sapiens]
          Length = 101

 Score =  191 bits (486), Expect = 5e-49
 Identities = 82/82 (100%), Positives = 82/82 (100%)

Query: 209 VKPEAWLSCGPSPGPGRLQLVCHVSGFYPKPVWVMWMRGEQEQRGTQRGDVLPNADETWW 268
           VKPEAWLSCGPSPGPGRLQLVCHVSGFYPKPVWVMWMRGEQEQRGTQRGDVLPNADETWW
Sbjct: 20  VKPEAWLSCGPSPGPGRLQLVCHVSGFYPKPVWVMWMRGEQEQRGTQRGDVLPNADETWW 79

Query: 269 IFHLSHPDLFDCDSYPGHIGCS 290
           IFHLSHPDLFDCDSYPGHIGCS
Sbjct: 80  IFHLSHPDLFDCDSYPGHIGCS 101



 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 21/24 (87%), Positives = 22/24 (91%), Gaps = 1/24 (4%)

Query: 1  MLLLFLLFEGLCCPGENTAA-PQA 23
          MLLLFLLFEGLCCPGENTA  P+A
Sbjct: 1  MLLLFLLFEGLCCPGENTAVKPEA 24


>gi|110618236 CD1E antigen isoform e precursor [Homo sapiens]
          Length = 187

 Score =  137 bits (346), Expect = 8e-33
 Identities = 59/61 (96%), Positives = 61/61 (100%)

Query: 209 VKPEAWLSCGPSPGPGRLQLVCHVSGFYPKPVWVMWMRGEQEQRGTQRGDVLPNADETWW 268
           VKPEAWLSCGPSPGPGRLQLVCHVSGFYPKPVWVMWMRGEQEQRGTQRGDVLPNADETW+
Sbjct: 20  VKPEAWLSCGPSPGPGRLQLVCHVSGFYPKPVWVMWMRGEQEQRGTQRGDVLPNADETWY 79

Query: 269 I 269
           +
Sbjct: 80  L 80



 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 21/24 (87%), Positives = 22/24 (91%), Gaps = 1/24 (4%)

Query: 1  MLLLFLLFEGLCCPGENTAA-PQA 23
          MLLLFLLFEGLCCPGENTA  P+A
Sbjct: 1  MLLLFLLFEGLCCPGENTAVKPEA 24


>gi|209862839 Fc fragment of IgG, receptor, transporter, alpha [Homo
           sapiens]
          Length = 365

 Score = 61.2 bits (147), Expect = 1e-09
 Identities = 79/285 (27%), Positives = 114/285 (40%), Gaps = 50/285 (17%)

Query: 2   LLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLGD 61
           LLLFLL      PG   A       YHL A   +S     T +F    W     SGWLG 
Sbjct: 13  LLLFLL------PGSLGAESHLSLLYHLTA---VSSPAPGTPAF----WV----SGWLGP 55

Query: 62  LQTHGWDTVLGTIRFLKPWSHGN----FSKQELKNLQSLFQLYFHSFIQIVQASAGQFQL 117
            Q   ++++ G       W   N    + ++E  +L+   +L+  +F    +A  G+   
Sbjct: 56  QQYLSYNSLRGEAEPCGAWVWENQVSWYWEKETTDLRIKEKLFLEAF----KALGGKG-- 109

Query: 118 EYPFEIQILAGCRM---NAPQIFLNMAYQGSDFLSFQ------GISWEPSPGAGIRAQNI 168
             P+ +Q L GC +   N        A  G +F++F       G  W  +     R Q  
Sbjct: 110 --PYTLQGLLGCELGPDNTSVPTAKFALNGEEFMNFDLKQGTWGGDWPEALAISQRWQQQ 167

Query: 169 CKVLNRYLDIKEILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQL 228
            K  N+ L       + L  +CP  L   +E G   L+ K  P   L   PS  PG   L
Sbjct: 168 DKAANKEL-------TFLLFSCPHRLREHLERGRGNLEWKEPPSMRLKARPS-SPGFSVL 219

Query: 229 VCHVSGFYPKPVWVMWMRGEQEQRGTQRGDVLPNADETWWIFHLS 273
            C    FYP  + + ++R      GT +GD  PN+D +   FH S
Sbjct: 220 TCSAFSFYPPELQLRFLRNGL-AAGTGQGDFGPNSDGS---FHAS 260


>gi|4758346 Fc fragment of IgG, receptor, transporter, alpha [Homo
           sapiens]
          Length = 365

 Score = 61.2 bits (147), Expect = 1e-09
 Identities = 79/285 (27%), Positives = 114/285 (40%), Gaps = 50/285 (17%)

Query: 2   LLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLGD 61
           LLLFLL      PG   A       YHL A   +S     T +F    W     SGWLG 
Sbjct: 13  LLLFLL------PGSLGAESHLSLLYHLTA---VSSPAPGTPAF----WV----SGWLGP 55

Query: 62  LQTHGWDTVLGTIRFLKPWSHGN----FSKQELKNLQSLFQLYFHSFIQIVQASAGQFQL 117
            Q   ++++ G       W   N    + ++E  +L+   +L+  +F    +A  G+   
Sbjct: 56  QQYLSYNSLRGEAEPCGAWVWENQVSWYWEKETTDLRIKEKLFLEAF----KALGGKG-- 109

Query: 118 EYPFEIQILAGCRM---NAPQIFLNMAYQGSDFLSFQ------GISWEPSPGAGIRAQNI 168
             P+ +Q L GC +   N        A  G +F++F       G  W  +     R Q  
Sbjct: 110 --PYTLQGLLGCELGPDNTSVPTAKFALNGEEFMNFDLKQGTWGGDWPEALAISQRWQQQ 167

Query: 169 CKVLNRYLDIKEILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQL 228
            K  N+ L       + L  +CP  L   +E G   L+ K  P   L   PS  PG   L
Sbjct: 168 DKAANKEL-------TFLLFSCPHRLREHLERGRGNLEWKEPPSMRLKARPS-SPGFSVL 219

Query: 229 VCHVSGFYPKPVWVMWMRGEQEQRGTQRGDVLPNADETWWIFHLS 273
            C    FYP  + + ++R      GT +GD  PN+D +   FH S
Sbjct: 220 TCSAFSFYPPELQLRFLRNGL-AAGTGQGDFGPNSDGS---FHAS 260


>gi|4504417 major histocompatibility complex, class I-related [Homo
           sapiens]
          Length = 341

 Score = 55.5 bits (132), Expect = 6e-08
 Identities = 51/219 (23%), Positives = 88/219 (40%), Gaps = 18/219 (8%)

Query: 79  PWSHGNFSKQELKNLQSLFQLYFHSFIQIVQASAGQFQLEYPFEIQILAGCRM---NAPQ 135
           PW   N +    +    L + +   F   ++     +        Q + GC +    +  
Sbjct: 70  PWMAENLAPDHWERYTQLLRGWQQMFKVELKRLQRHYNHSGSHTYQRMIGCELLEDGSTT 129

Query: 136 IFLNMAYQGSDFLSFQG--ISWEPSPGAGIRAQNICKVLNRYLDIK--EIL--QSLLGHT 189
            FL  AY G DFL F    +SW       +   N+   + +  +    E+L  ++ L   
Sbjct: 130 GFLQYAYDGQDFLIFNKDTLSW-------LAVDNVAHTIKQAWEANQHELLYQKNWLEEE 182

Query: 190 CPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYPKPVWVMWMR-GE 248
           C  +L   +E G+  L+R   P   ++      PG   L C   GFYP  +++ WM+ GE
Sbjct: 183 CIAWLKRFLEYGKDTLQRTEPPLVRVN-RKETFPGVTALFCKAHGFYPPEIYMTWMKNGE 241

Query: 249 QEQRGTQRGDVLPNADETWWIFHLSHPDLFDCDSYPGHI 287
           +  +    GD+LP+ D T+  +     D    + Y  H+
Sbjct: 242 EIVQEIDYGDILPSGDGTYQAWASIELDPQSSNLYSCHV 280


>gi|21040349 hemochromatosis protein isoform 7 precursor [Homo
           sapiens]
          Length = 260

 Score = 48.5 bits (114), Expect = 7e-06
 Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 14/174 (8%)

Query: 105 IQIVQASAGQFQLEYPFEIQILAGCRM---NAPQIFLNMAYQGSDFLSF--QGISWEPSP 159
           + ++Q +  Q +L     +Q++ GC M   N+ + +    Y G D L F    + W    
Sbjct: 12  LMLLQTAVLQGRLLQSHTLQVILGCEMQEDNSTEGYWKYGYDGQDHLEFCPDTLDWR--- 68

Query: 160 GAGIRAQNICKVLNRYLDIKEILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGP 219
            A  RA        R+       ++ L   CP  L  L+E G   L ++V P   ++   
Sbjct: 69  AAEPRAWPTKLEWERHKIRARQNRAYLERDCPAQLQQLLELGRGVLDQQVPPLVKVTHHV 128

Query: 220 SPGPGRLQLVCHVSGFYPKPVWVMWMRGEQ--EQRGTQRGDVLPNADETW--WI 269
           +     L+  C    +YP+ + + W++ +Q  + +  +  DVLPN D T+  WI
Sbjct: 129 TSSVTTLR--CRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWI 180


>gi|24797067 major histocompatibility complex, class I, A precursor
           [Homo sapiens]
          Length = 365

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 43/152 (28%), Positives = 65/152 (42%), Gaps = 12/152 (7%)

Query: 123 IQILAGCRMNAPQIFLNM----AYQGSDFLSFQGI--SWEPSPGAGIRAQNICKVLNRYL 176
           IQI+ GC + +   FL      AY G D+++      SW     A   A  I K      
Sbjct: 119 IQIMYGCDVGSDGRFLRGYRQDAYDGKDYIALNEDLRSWT----AADMAAQITKRKWEAA 174

Query: 177 DIKEILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFY 236
              E L++ L  TC  +L   +E G+  L+R   P+  ++  P        L C   GFY
Sbjct: 175 HEAEQLRAYLDGTCVEWLRRYLENGKETLQRTDPPKTHMTHHPI-SDHEATLRCWALGFY 233

Query: 237 PKPVWVMWMR-GEQEQRGTQRGDVLPNADETW 267
           P  + + W R GE + + T+  +  P  D T+
Sbjct: 234 PAEITLTWQRDGEDQTQDTELVETRPAGDGTF 265


>gi|21040353 hemochromatosis protein isoform 9 precursor [Homo
           sapiens]
          Length = 325

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 47/201 (23%), Positives = 79/201 (39%), Gaps = 15/201 (7%)

Query: 79  PWSHGNFSKQELKNLQSLFQLYFHSF-IQIVQASAGQFQLEYPFEIQILAGCRM---NAP 134
           PW     S Q    L    + + H F +            +    +Q++ GC M   N+ 
Sbjct: 50  PWVSSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHTLQVILGCEMQEDNST 109

Query: 135 QIFLNMAYQGSDFLSF--QGISWEPSPGAGIRAQNICKVLNRYLDIKEILQSLLGHTCPR 192
           + +    Y G D L F    + W     A  RA        R+       ++ L   CP 
Sbjct: 110 EGYWKYGYDGQDHLEFCPDTLDWR---AAEPRAWPTKLEWERHKIRARQNRAYLERDCPA 166

Query: 193 FLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYPKPVWVMWMRGEQ--E 250
            L  L+E G   L ++V P   ++   +     L+  C    +YP+ + + W++ +Q  +
Sbjct: 167 QLQQLLELGRGVLDQQVPPLVKVTHHVTSSVTTLR--CRALNYYPQNITMKWLKDKQPMD 224

Query: 251 QRGTQRGDVLPNADETW--WI 269
            +  +  DVLPN D T+  WI
Sbjct: 225 AKEFEPKDVLPNGDGTYQGWI 245


>gi|4504377 hemochromatosis protein isoform 1 precursor [Homo
           sapiens]
          Length = 348

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 47/201 (23%), Positives = 79/201 (39%), Gaps = 15/201 (7%)

Query: 79  PWSHGNFSKQELKNLQSLFQLYFHSF-IQIVQASAGQFQLEYPFEIQILAGCRM---NAP 134
           PW     S Q    L    + + H F +            +    +Q++ GC M   N+ 
Sbjct: 73  PWVSSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHTLQVILGCEMQEDNST 132

Query: 135 QIFLNMAYQGSDFLSF--QGISWEPSPGAGIRAQNICKVLNRYLDIKEILQSLLGHTCPR 192
           + +    Y G D L F    + W     A  RA        R+       ++ L   CP 
Sbjct: 133 EGYWKYGYDGQDHLEFCPDTLDWR---AAEPRAWPTKLEWERHKIRARQNRAYLERDCPA 189

Query: 193 FLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYPKPVWVMWMRGEQ--E 250
            L  L+E G   L ++V P   ++   +     L+  C    +YP+ + + W++ +Q  +
Sbjct: 190 QLQQLLELGRGVLDQQVPPLVKVTHHVTSSVTTLR--CRALNYYPQNITMKWLKDKQPMD 247

Query: 251 QRGTQRGDVLPNADETW--WI 269
            +  +  DVLPN D T+  WI
Sbjct: 248 AKEFEPKDVLPNGDGTYQGWI 268


>gi|4502337 alpha-2-glycoprotein 1, zinc [Homo sapiens]
          Length = 298

 Score = 45.1 bits (105), Expect = 7e-05
 Identities = 70/298 (23%), Positives = 112/298 (37%), Gaps = 33/298 (11%)

Query: 1   MLLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLG 60
           +LL  LL  G   P EN     +L   +      LS  +    +F        +  G L 
Sbjct: 7   VLLSLLLLLGPAVPQENQDGRYSLTYIYTG----LSKHVEDVPAF--------QALGSLN 54

Query: 61  DLQTHGWDTV------LGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIQIVQASAGQ 114
           DLQ   +++       +G  R ++         Q  K  + +F       ++    S G 
Sbjct: 55  DLQFFRYNSKDRKSQPMGLWRQVEGMEDWKQDSQLQKAREDIFMETLKDIVEYYNDSNGS 114

Query: 115 FQLEYPFEIQILAGCRMNAPQIFLNMAYQGSDFLSFQGI--SWEP-SPGAGIRAQNICKV 171
             L+  F  +I       A   F    Y G D++ F     +W P  P A I  Q   + 
Sbjct: 115 HVLQGRFGCEIENNRSSGA---FWKYYYDGKDYIEFNKEIPAWVPFDPAAQITKQK-WEA 170

Query: 172 LNRYLDIKEILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCH 231
              Y+   +  ++ L   CP  L   ++  ++ L R+  P   ++   +PG  + +L C 
Sbjct: 171 EPVYV---QRAKAYLEEECPATLRKYLKYSKNILDRQDPPSVVVTSHQAPGEKK-KLKCL 226

Query: 232 VSGFYPKPVWVMWMRGEQEQRGTQRGDVLPNADETW--WIFHLSHPDLFDCDSYPGHI 287
              FYP  + V W R  + Q    RGDVL N + T+  W+     P   D   Y  H+
Sbjct: 227 AYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQ--DTAPYSCHV 282


>gi|21040351 hemochromatosis protein isoform 8 precursor [Homo
           sapiens]
          Length = 246

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 42/174 (24%), Positives = 71/174 (40%), Gaps = 28/174 (16%)

Query: 105 IQIVQASAGQFQLEYPFEIQILAGCRM---NAPQIFLNMAYQGSDFLSF--QGISWEPSP 159
           + ++Q +  Q +L     +Q++ GC M   N+ + +    Y G D L F    + W    
Sbjct: 12  LMLLQTAVLQGRLLQSHTLQVILGCEMQEDNSTEGYWKYGYDGQDHLEFCPDTLDWR--- 68

Query: 160 GAGIRAQNICKVLNRYLDIKEILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGP 219
            A  RA        R+       ++ L   CP  L  L+E G   L ++V          
Sbjct: 69  AAEPRAWPTKLEWERHKIRARQNRAYLERDCPAQLQQLLELGRGVLDQQVTT-------- 120

Query: 220 SPGPGRLQLVCHVSGFYPKPVWVMWMRGEQ--EQRGTQRGDVLPNADETW--WI 269
                   L C    +YP+ + + W++ +Q  + +  +  DVLPN D T+  WI
Sbjct: 121 --------LRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWI 166


>gi|149158702 major histocompatibility complex, class I, F isoform 1
           precursor [Homo sapiens]
          Length = 442

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 39/155 (25%), Positives = 64/155 (41%), Gaps = 18/155 (11%)

Query: 123 IQILAGCRMNAPQIFLN----MAYQGSDFLSFQGI--SWEPSPGAGIRAQNICKVLNRYL 176
           +Q + GC M      L      AY G D++S      SW         A  + ++  R+ 
Sbjct: 116 LQGMNGCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTA-------ADTVAQITQRFY 168

Query: 177 DIKEILQSL---LGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVS 233
           + +E  +     L   C   L   +E G+  L+R   P+A ++  P        L C   
Sbjct: 169 EAEEYAEEFRTYLEGECLELLRRYLENGKETLQRADPPKAHVAHHPI-SDHEATLRCWAL 227

Query: 234 GFYPKPVWVMWMR-GEQEQRGTQRGDVLPNADETW 267
           GFYP  + + W R GE++ + T+  +  P  D T+
Sbjct: 228 GFYPAEITLTWQRDGEEQTQDTELVETRPAGDGTF 262


>gi|149158698 major histocompatibility complex, class I, F isoform 2
           precursor [Homo sapiens]
          Length = 346

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 39/155 (25%), Positives = 64/155 (41%), Gaps = 18/155 (11%)

Query: 123 IQILAGCRMNAPQIFLN----MAYQGSDFLSFQGI--SWEPSPGAGIRAQNICKVLNRYL 176
           +Q + GC M      L      AY G D++S      SW         A  + ++  R+ 
Sbjct: 116 LQGMNGCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTA-------ADTVAQITQRFY 168

Query: 177 DIKEILQSL---LGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVS 233
           + +E  +     L   C   L   +E G+  L+R   P+A ++  P        L C   
Sbjct: 169 EAEEYAEEFRTYLEGECLELLRRYLENGKETLQRADPPKAHVAHHPI-SDHEATLRCWAL 227

Query: 234 GFYPKPVWVMWMR-GEQEQRGTQRGDVLPNADETW 267
           GFYP  + + W R GE++ + T+  +  P  D T+
Sbjct: 228 GFYPAEITLTWQRDGEEQTQDTELVETRPAGDGTF 262


>gi|21040347 hemochromatosis protein isoform 6 precursor [Homo
           sapiens]
          Length = 334

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 46/201 (22%), Positives = 74/201 (36%), Gaps = 29/201 (14%)

Query: 79  PWSHGNFSKQELKNLQSLFQLYFHSF-IQIVQASAGQFQLEYPFEIQILAGCRM---NAP 134
           PW     S Q    L    + + H F +            +    +Q++ GC M   N+ 
Sbjct: 73  PWVSSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHTLQVILGCEMQEDNST 132

Query: 135 QIFLNMAYQGSDFLSF--QGISWEPSPGAGIRAQNICKVLNRYLDIKEILQSLLGHTCPR 192
           + +    Y G D L F    + W     A  RA        R+       ++ L   CP 
Sbjct: 133 EGYWKYGYDGQDHLEFCPDTLDWR---AAEPRAWPTKLEWERHKIRARQNRAYLERDCPA 189

Query: 193 FLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYPKPVWVMWMRGEQ--E 250
            L  L+E G   L ++V                  L C    +YP+ + + W++ +Q  +
Sbjct: 190 QLQQLLELGRGVLDQQVTT----------------LRCRALNYYPQNITMKWLKDKQPMD 233

Query: 251 QRGTQRGDVLPNADETW--WI 269
            +  +  DVLPN D T+  WI
Sbjct: 234 AKEFEPKDVLPNGDGTYQGWI 254


>gi|52630342 major histocompatibility complex, class I, C precursor
           [Homo sapiens]
          Length = 366

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 39/155 (25%), Positives = 65/155 (41%), Gaps = 18/155 (11%)

Query: 123 IQILAGCRMNAPQIFLN----MAYQGSDFLSFQGI--SWEPSPGAGIRAQNICKVLNRYL 176
           +Q ++GC +      L      AY G D+++      SW         A    ++  R L
Sbjct: 119 LQRMSGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTA-------ADTAAQITQRKL 171

Query: 177 DIK---EILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVS 233
           +     E L++ L  TC  +L   +E G+  L+R   P+  ++  P        L C   
Sbjct: 172 EAARAAEQLRAYLEGTCVEWLRRYLENGKETLQRAEPPKTHVTHHPL-SDHEATLRCWAL 230

Query: 234 GFYPKPVWVMWMR-GEQEQRGTQRGDVLPNADETW 267
           GFYP  + + W R GE + + T+  +  P  D T+
Sbjct: 231 GFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTF 265


>gi|4504415 major histocompatibility complex, class I, G precursor
           [Homo sapiens]
          Length = 338

 Score = 42.7 bits (99), Expect = 4e-04
 Identities = 38/152 (25%), Positives = 65/152 (42%), Gaps = 12/152 (7%)

Query: 123 IQILAGCRMNAPQIFLN----MAYQGSDFLSFQGI--SWEPSPGAGIRAQNICKVLNRYL 176
           +Q + GC + +    L      AY G D+L+      SW  +  A   ++  C+  N   
Sbjct: 119 LQWMIGCDLGSDGRLLRGYEQYAYDGKDYLALNEDLRSWTAADTAAQISKRKCEAAN--- 175

Query: 177 DIKEILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFY 236
            + E  ++ L  TC  +L   +E G+  L+R   P+  ++  P        L C   GFY
Sbjct: 176 -VAEQRRAYLEGTCVEWLHRYLENGKEMLQRADPPKTHVTHHPV-FDYEATLRCWALGFY 233

Query: 237 PKPVWVMWMR-GEQEQRGTQRGDVLPNADETW 267
           P  + + W R GE + +  +  +  P  D T+
Sbjct: 234 PAEIILTWQRDGEDQTQDVELVETRPAGDGTF 265


>gi|89063265 PREDICTED: similar to MHC class I antigen [Homo
           sapiens]
          Length = 366

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 39/152 (25%), Positives = 63/152 (41%), Gaps = 12/152 (7%)

Query: 123 IQILAGCRMNAPQIFLNM----AYQGSDFLSFQGI--SWEPSPGAGIRAQNICKVLNRYL 176
           +Q++ GC +     FL      AY G D+++      SW     A   A  I K      
Sbjct: 132 LQLMYGCDVGPDGRFLRGFMQDAYDGRDYIALNEDLRSWT----AADTAAQITKRKREAA 187

Query: 177 DIKEILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFY 236
              E  ++ L   C   L   +E G+  L R   P+A ++  P      + L C   GFY
Sbjct: 188 GAAERQRNYLEGRCVEGLRRYLETGKDALLRADPPKAHVTHHPI-SEREVTLRCWALGFY 246

Query: 237 PKPVWVMWMR-GEQEQRGTQRGDVLPNADETW 267
           P+ + + W R GE + +  +  +  P+ D T+
Sbjct: 247 PEEISLTWQREGEDQTQDMELVETRPSGDGTF 278


>gi|24797076 major histocompatibility complex, class II, DP beta 1
           precursor [Homo sapiens]
          Length = 258

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 8/74 (10%)

Query: 201 GESELKRKVKPEAWLSCGPSPGPGRLQ----LVCHVSGFYPKPVWVMW-MRGEQEQRGTQ 255
           G   L+R+V+P   +S  PS   G LQ    LVCHV+ FYP  + V W + G++E  G  
Sbjct: 114 GPMTLQRRVQPRVNVS--PSK-KGPLQHHNLLVCHVTDFYPGSIQVRWFLNGQEETAGVV 170

Query: 256 RGDVLPNADETWWI 269
             +++ N D T+ I
Sbjct: 171 STNLIRNGDWTFQI 184


>gi|239748785 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-9 beta chain [Homo sapiens]
          Length = 266

 Score = 39.3 bits (90), Expect = 0.004
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 3/70 (4%)

Query: 201 GES-ELKRKVKPEAWL-SCGPSPGPGRLQLVCHVSGFYPKPVWVMWMR-GEQEQRGTQRG 257
           GES  ++R+V PE  +      P      LVC VSGFYP  + V W R G++E+ G    
Sbjct: 115 GESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVST 174

Query: 258 DVLPNADETW 267
            ++ N D T+
Sbjct: 175 GLIQNGDWTF 184


>gi|239740745 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
          Length = 266

 Score = 39.3 bits (90), Expect = 0.004
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 3/70 (4%)

Query: 201 GES-ELKRKVKPEAWL-SCGPSPGPGRLQLVCHVSGFYPKPVWVMWMR-GEQEQRGTQRG 257
           GES  ++R+V PE  +      P      LVC VSGFYP  + V W R G++E+ G    
Sbjct: 115 GESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVST 174

Query: 258 DVLPNADETW 267
            ++ N D T+
Sbjct: 175 GLIQNGDWTF 184


>gi|239740743 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
          Length = 264

 Score = 39.3 bits (90), Expect = 0.004
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 3/70 (4%)

Query: 201 GES-ELKRKVKPEAWL-SCGPSPGPGRLQLVCHVSGFYPKPVWVMWMR-GEQEQRGTQRG 257
           GES  ++R+V PE  +      P      LVC VSGFYP  + V W R G++E+ G    
Sbjct: 113 GESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVST 172

Query: 258 DVLPNADETW 267
            ++ N D T+
Sbjct: 173 GLIQNGDWTF 182


>gi|239740695 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
          Length = 266

 Score = 39.3 bits (90), Expect = 0.004
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 3/70 (4%)

Query: 201 GES-ELKRKVKPEAWL-SCGPSPGPGRLQLVCHVSGFYPKPVWVMWMR-GEQEQRGTQRG 257
           GES  ++R+V PE  +      P      LVC VSGFYP  + V W R G++E+ G    
Sbjct: 115 GESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVST 174

Query: 258 DVLPNADETW 267
            ++ N D T+
Sbjct: 175 GLIQNGDWTF 184


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.138    0.459 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,977,780
Number of Sequences: 37866
Number of extensions: 619860
Number of successful extensions: 1487
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1421
Number of HSP's gapped (non-prelim): 86
length of query: 290
length of database: 18,247,518
effective HSP length: 101
effective length of query: 189
effective length of database: 14,423,052
effective search space: 2725956828
effective search space used: 2725956828
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.