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Search of human proteins with 110578665
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|110578665 seven in absentia homolog 3 [Homo sapiens]
(269 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|110578665 seven in absentia homolog 3 [Homo sapiens] 575 e-164
gi|31982899 seven in absentia homolog 2 [Homo sapiens] 194 7e-50
gi|55749557 seven in absentia homolog 1 isoform b [Homo sapiens] 186 1e-47
gi|63148618 seven in absentia homolog 1 isoform a [Homo sapiens] 186 1e-47
gi|61966923 forkhead box B2 [Homo sapiens] 51 9e-07
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 50 2e-06
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 50 2e-06
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 50 2e-06
gi|171460948 TSC22 domain family, member 1 isoform 1 [Homo sapiens] 47 1e-05
gi|20070107 orthodenticle homeobox 1 [Homo sapiens] 46 3e-05
gi|32698730 nuclear fragile X mental retardation protein interac... 46 4e-05
gi|18765752 dual-specificity tyrosine-(Y)-phosphorylation regula... 45 9e-05
gi|18765758 dual-specificity tyrosine-(Y)-phosphorylation regula... 45 9e-05
gi|89886261 histidine rich carboxyl terminus 1 [Homo sapiens] 45 9e-05
gi|71274111 v-maf musculoaponeurotic fibrosarcoma oncogene homol... 44 1e-04
gi|56550035 colon carcinoma related protein [Homo sapiens] 44 1e-04
gi|32307177 forkhead box G1 [Homo sapiens] 43 3e-04
gi|37595553 ring finger protein 111 [Homo sapiens] 42 4e-04
gi|23308699 transcription factor MAFB [Homo sapiens] 42 7e-04
gi|239757043 PREDICTED: functional smad suppressing element 18 [... 42 7e-04
gi|239751555 PREDICTED: functional smad suppressing element 18 [... 42 7e-04
gi|239746067 PREDICTED: functional smad suppressing element 18 [... 42 7e-04
gi|122937233 discs, large (Drosophila) homolog-associated protei... 41 0.001
gi|27894361 nuclear receptor subfamily 4, group A, member 3 isof... 41 0.001
gi|27894359 nuclear receptor subfamily 4, group A, member 3 isof... 41 0.001
gi|27894357 nuclear receptor subfamily 4, group A, member 3 isof... 41 0.001
gi|27894355 nuclear receptor subfamily 4, group A, member 3 isof... 41 0.001
gi|14916427 naked cuticle homolog 2 [Homo sapiens] 41 0.001
gi|59938776 cAMP responsive element binding protein 5 isoform de... 40 0.002
gi|59938774 cAMP responsive element binding protein 5 isoform be... 40 0.002
>gi|110578665 seven in absentia homolog 3 [Homo sapiens]
Length = 269
Score = 575 bits (1481), Expect = e-164
Identities = 269/269 (100%), Positives = 269/269 (100%)
Query: 1 MLFFTQCFGAVLDLIHLRFQHYKAKRVFSAAGQLVCVVNPTHNLKYVSSRRAVTQSAPEQ 60
MLFFTQCFGAVLDLIHLRFQHYKAKRVFSAAGQLVCVVNPTHNLKYVSSRRAVTQSAPEQ
Sbjct: 1 MLFFTQCFGAVLDLIHLRFQHYKAKRVFSAAGQLVCVVNPTHNLKYVSSRRAVTQSAPEQ 60
Query: 61 GSFHPHHLSHHHCHHRHHHHLRHHAHPHHLHHQEAGLHANPVTPCLCMCPLFSCQWEGRL 120
GSFHPHHLSHHHCHHRHHHHLRHHAHPHHLHHQEAGLHANPVTPCLCMCPLFSCQWEGRL
Sbjct: 61 GSFHPHHLSHHHCHHRHHHHLRHHAHPHHLHHQEAGLHANPVTPCLCMCPLFSCQWEGRL 120
Query: 121 EVVVPHLRQIHRVDILQGAEIVFLATDMHLPAPADWIIMHSCLGHHFLLVLRKQERHEGH 180
EVVVPHLRQIHRVDILQGAEIVFLATDMHLPAPADWIIMHSCLGHHFLLVLRKQERHEGH
Sbjct: 121 EVVVPHLRQIHRVDILQGAEIVFLATDMHLPAPADWIIMHSCLGHHFLLVLRKQERHEGH 180
Query: 181 PQFFATMMLIGTPTQADCFTYRLELNRNHRRLKWEATPRSVLECVDSVITDGDCLVLNTS 240
PQFFATMMLIGTPTQADCFTYRLELNRNHRRLKWEATPRSVLECVDSVITDGDCLVLNTS
Sbjct: 181 PQFFATMMLIGTPTQADCFTYRLELNRNHRRLKWEATPRSVLECVDSVITDGDCLVLNTS 240
Query: 241 LAQLFSDNGSLAIGIAITATEVLPSEAEM 269
LAQLFSDNGSLAIGIAITATEVLPSEAEM
Sbjct: 241 LAQLFSDNGSLAIGIAITATEVLPSEAEM 269
>gi|31982899 seven in absentia homolog 2 [Homo sapiens]
Length = 324
Score = 194 bits (493), Expect = 7e-50
Identities = 93/172 (54%), Positives = 121/172 (70%), Gaps = 3/172 (1%)
Query: 90 LHHQEAGLHAN--PVTPCLCMCPLFSCQWEGRLEVVVPHLRQIHR-VDILQGAEIVFLAT 146
LHH E H + P C CP SC+W+G LE V+ HL H+ + LQG +IVFLAT
Sbjct: 149 LHHTEKPEHEDICEYRPYSCPCPGASCKWQGSLEAVMSHLMHAHKSITTLQGEDIVFLAT 208
Query: 147 DMHLPAPADWIIMHSCLGHHFLLVLRKQERHEGHPQFFATMMLIGTPTQADCFTYRLELN 206
D++LP DW++M SC GHHF+LVL KQE++EGH QFFA ++LIGT QA+ F YRLELN
Sbjct: 209 DINLPGAVDWVMMQSCFGHHFMLVLEKQEKYEGHQQFFAIVLLIGTRKQAENFAYRLELN 268
Query: 207 RNHRRLKWEATPRSVLECVDSVITDGDCLVLNTSLAQLFSDNGSLAIGIAIT 258
N RRL WEATPRS+ + V + I + DCLV +T++A LF+DNG+L I + I+
Sbjct: 269 GNRRRLTWEATPRSIHDGVAAAIMNSDCLVFDTAIAHLFADNGNLGINVTIS 320
>gi|55749557 seven in absentia homolog 1 isoform b [Homo sapiens]
Length = 313
Score = 186 bits (473), Expect = 1e-47
Identities = 86/156 (55%), Positives = 115/156 (73%), Gaps = 1/156 (0%)
Query: 104 PCLCMCPLFSCQWEGRLEVVVPHLRQIHR-VDILQGAEIVFLATDMHLPAPADWIIMHSC 162
P C CP SC+W+G L+ V+PHL H+ + LQG +IVFLATD++LP DW++M SC
Sbjct: 156 PYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDINLPGAVDWVMMQSC 215
Query: 163 LGHHFLLVLRKQERHEGHPQFFATMMLIGTPTQADCFTYRLELNRNHRRLKWEATPRSVL 222
G HF+LVL KQE+++GH QFFA + LIGT QA+ F YRLELN + RRL WEATPRS+
Sbjct: 216 FGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIH 275
Query: 223 ECVDSVITDGDCLVLNTSLAQLFSDNGSLAIGIAIT 258
E + + I + DCLV +TS+AQLF++NG+L I + I+
Sbjct: 276 EGIATAIMNSDCLVFDTSIAQLFAENGNLGINVTIS 311
>gi|63148618 seven in absentia homolog 1 isoform a [Homo sapiens]
Length = 282
Score = 186 bits (473), Expect = 1e-47
Identities = 86/156 (55%), Positives = 115/156 (73%), Gaps = 1/156 (0%)
Query: 104 PCLCMCPLFSCQWEGRLEVVVPHLRQIHR-VDILQGAEIVFLATDMHLPAPADWIIMHSC 162
P C CP SC+W+G L+ V+PHL H+ + LQG +IVFLATD++LP DW++M SC
Sbjct: 125 PYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDINLPGAVDWVMMQSC 184
Query: 163 LGHHFLLVLRKQERHEGHPQFFATMMLIGTPTQADCFTYRLELNRNHRRLKWEATPRSVL 222
G HF+LVL KQE+++GH QFFA + LIGT QA+ F YRLELN + RRL WEATPRS+
Sbjct: 185 FGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIH 244
Query: 223 ECVDSVITDGDCLVLNTSLAQLFSDNGSLAIGIAIT 258
E + + I + DCLV +TS+AQLF++NG+L I + I+
Sbjct: 245 EGIATAIMNSDCLVFDTSIAQLFAENGNLGINVTIS 280
>gi|61966923 forkhead box B2 [Homo sapiens]
Length = 432
Score = 51.2 bits (121), Expect = 9e-07
Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 37 VVNPTHNLKYVSSRRAVTQSAPEQGSFHPHHLSHHHCHHRHHHHLRHHAHPHH 89
V+ H + S ++ + P G HPHH HHH HH HHHH H H HH
Sbjct: 111 VLRADHTHLHAGSTKSAPGAGPG-GHLHPHH--HHHPHHHHHHHAAAHHHHHH 160
Score = 46.6 bits (109), Expect = 2e-05
Identities = 24/51 (47%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 54 TQSAPEQGSFHPHHLSHHHCHHRHHHHLRHHAHPHHLHHQEAGLHANPVTP 104
T+SAP G HL HH HH HHHH HHA HH HH P P
Sbjct: 124 TKSAPGAGP--GGHLHPHHHHHPHHHH-HHHAAAHHHHHHHPPQPPPPPPP 171
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 50.1 bits (118), Expect = 2e-06
Identities = 26/56 (46%), Positives = 26/56 (46%), Gaps = 15/56 (26%)
Query: 40 PTHNLKYVSSRRAVTQSAPEQGSFHPHHLSHHHCHHRHHHHLRHHAHPHHLHHQEA 95
P H LK V A P H HHH HH HHHH HHA HHLHH A
Sbjct: 7 PNHKLKTVGEAPAA-----------PPHQQHHHHHHAHHHH--HHA--HHLHHHHA 47
Score = 32.0 bits (71), Expect = 0.58
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 4/25 (16%)
Query: 74 HHRHHHHLRHHAHPHHLHHQEAGLH 98
H +HHHH HHA HH HH LH
Sbjct: 23 HQQHHHH--HHA--HHHHHHAHHLH 43
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 50.1 bits (118), Expect = 2e-06
Identities = 26/56 (46%), Positives = 26/56 (46%), Gaps = 15/56 (26%)
Query: 40 PTHNLKYVSSRRAVTQSAPEQGSFHPHHLSHHHCHHRHHHHLRHHAHPHHLHHQEA 95
P H LK V A P H HHH HH HHHH HHA HHLHH A
Sbjct: 7 PNHKLKTVGEAPAA-----------PPHQQHHHHHHAHHHH--HHA--HHLHHHHA 47
Score = 32.0 bits (71), Expect = 0.58
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 4/25 (16%)
Query: 74 HHRHHHHLRHHAHPHHLHHQEAGLH 98
H +HHHH HHA HH HH LH
Sbjct: 23 HQQHHHH--HHA--HHHHHHAHHLH 43
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 50.1 bits (118), Expect = 2e-06
Identities = 26/56 (46%), Positives = 26/56 (46%), Gaps = 15/56 (26%)
Query: 40 PTHNLKYVSSRRAVTQSAPEQGSFHPHHLSHHHCHHRHHHHLRHHAHPHHLHHQEA 95
P H LK V A P H HHH HH HHHH HHA HHLHH A
Sbjct: 7 PNHKLKTVGEAPAA-----------PPHQQHHHHHHAHHHH--HHA--HHLHHHHA 47
Score = 32.0 bits (71), Expect = 0.58
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 4/25 (16%)
Query: 74 HHRHHHHLRHHAHPHHLHHQEAGLH 98
H +HHHH HHA HH HH LH
Sbjct: 23 HQQHHHH--HHA--HHHHHHAHHLH 43
>gi|171460948 TSC22 domain family, member 1 isoform 1 [Homo sapiens]
Length = 1073
Score = 47.4 bits (111), Expect = 1e-05
Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 55 QSAPEQGSFHPHHLSHHHCHHRHHHHLRH-HAHPHHLHHQEAGLHANP 101
Q+ G+ HPHHL HHH H H HHL+H H HP H+ A + P
Sbjct: 207 QNVVINGNAHPHHLHHHHQIH-HGHHLQHGHHHPSHVAVASASITGGP 253
Score = 28.5 bits (62), Expect = 6.4
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 42 HNLKYVSSRRAVTQSAPEQGSFHPHHLSHHHC---HHRHHHHLRHHAHPHHLHH 92
+N + + AV+ + P H HL + + H HHL HH H +HH
Sbjct: 178 NNFQEAETPGAVSPNQPHLPQPHLPHLPQQNVVINGNAHPHHLHHH---HQIHH 228
>gi|20070107 orthodenticle homeobox 1 [Homo sapiens]
Length = 354
Score = 46.2 bits (108), Expect = 3e-05
Identities = 26/70 (37%), Positives = 28/70 (40%), Gaps = 13/70 (18%)
Query: 40 PTHNLKYVSSRRAVTQSAPEQGSFHPHHLSH--------HHCHHRHHHH-----LRHHAH 86
PT + Y + AP HPH LS HH HH H HH HH H
Sbjct: 236 PTPSSSYFGGVDCSSYLAPMHSHHHPHQLSPMAPSSMAGHHHHHPHAHHPLSQSSGHHHH 295
Query: 87 PHHLHHQEAG 96
HH HHQ G
Sbjct: 296 HHHHHHQGYG 305
>gi|32698730 nuclear fragile X mental retardation protein
interacting protein 2 [Homo sapiens]
Length = 695
Score = 45.8 bits (107), Expect = 4e-05
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Query: 58 PEQGSFHPHHLSHHH-------CHHRHHHHLRHHAHPHHLHHQEAGLH 98
P+ H HH HHH HH HH++ +H+H HH HH H
Sbjct: 8 PQPQHHHSHHHPHHHPQQQQQQPHHHHHYYFYNHSHNHHHHHHHQQPH 55
Score = 40.0 bits (92), Expect = 0.002
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 58 PEQGSFHPHHLSHH----HCHHRHHHHLRHHAHPH-HLHHQEAG 96
P+Q PHH H+ H H+ HHHH HH PH +L H G
Sbjct: 23 PQQQQQQPHHHHHYYFYNHSHNHHHHH--HHQQPHQYLQHGAEG 64
Score = 37.7 bits (86), Expect = 0.011
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 61 GSFHPHHLSHHHCHHRHHHHLRHHAHPHHLHH 92
G P H HH HH HHH + PHH HH
Sbjct: 6 GQPQPQH--HHSHHHPHHHPQQQQQQPHHHHH 35
>gi|18765752 dual-specificity tyrosine-(Y)-phosphorylation regulated
kinase 1A isoform 2 [Homo sapiens]
Length = 754
Score = 44.7 bits (104), Expect = 9e-05
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Query: 57 APEQGSFHPHHLSHHHCHHRHHHHLRHHAHPHHLHHQEAGLHANPVTPCLCMCPLFSCQW 116
AP+Q + H HH + H HH HHHH HH H Q+A N P + P S
Sbjct: 583 APQQNALHHHHGNSSHHHHHHHHH-------HHHHGQQA--LGNRTRPRVYNSPTNSSST 633
Query: 117 EGRLEVVVPH 126
+ +EV H
Sbjct: 634 QDSMEVGHSH 643
>gi|18765758 dual-specificity tyrosine-(Y)-phosphorylation regulated
kinase 1A isoform 1 [Homo sapiens]
Length = 763
Score = 44.7 bits (104), Expect = 9e-05
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Query: 57 APEQGSFHPHHLSHHHCHHRHHHHLRHHAHPHHLHHQEAGLHANPVTPCLCMCPLFSCQW 116
AP+Q + H HH + H HH HHHH HH H Q+A N P + P S
Sbjct: 592 APQQNALHHHHGNSSHHHHHHHHH-------HHHHGQQA--LGNRTRPRVYNSPTNSSST 642
Query: 117 EGRLEVVVPH 126
+ +EV H
Sbjct: 643 QDSMEVGHSH 652
>gi|89886261 histidine rich carboxyl terminus 1 [Homo sapiens]
Length = 115
Score = 44.7 bits (104), Expect = 9e-05
Identities = 20/40 (50%), Positives = 22/40 (55%), Gaps = 8/40 (20%)
Query: 64 HPHHLSH------HHCHHRHH--HHLRHHAHPHHLHHQEA 95
HP H+SH HH HH H HHL HH HPH H + A
Sbjct: 75 HPGHVSHVPNVGLHHHHHPRHTPHHLHHHHHPHRHHPRHA 114
Score = 33.5 bits (75), Expect = 0.20
Identities = 16/32 (50%), Positives = 16/32 (50%), Gaps = 9/32 (28%)
Query: 70 HHHCHHRHHHH-----LRHHAHP----HHLHH 92
HHH H H H L HH HP HHLHH
Sbjct: 71 HHHRHPGHVSHVPNVGLHHHHHPRHTPHHLHH 102
Score = 28.1 bits (61), Expect = 8.4
Identities = 11/19 (57%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 65 PHHLSHHHC-HHRHHHHLR 82
PHHL HHH H H H R
Sbjct: 97 PHHLHHHHHPHRHHPRHAR 115
>gi|71274111 v-maf musculoaponeurotic fibrosarcoma oncogene homolog
A [Homo sapiens]
Length = 353
Score = 44.3 bits (103), Expect = 1e-04
Identities = 20/41 (48%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 57 APEQGSFHPHHLSHHHCHHR-HHHHLRHHAHPHHLHHQEAG 96
A + G+ H HH HH HHHH HH H HH HH AG
Sbjct: 177 ADDMGAGH-----HHGAHHAAHHHHAAHHHHHHHHHHGGAG 212
>gi|56550035 colon carcinoma related protein [Homo sapiens]
Length = 326
Score = 43.9 bits (102), Expect = 1e-04
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 54 TQSAPEQGSFHPHHLSHHHCHHRHHHHLRHHAHPHHLHHQEAGLHANP 101
+Q +P H ++ HHH H HH RHH HH HH AG +P
Sbjct: 213 SQVSPSYSHMHDVYMRHHHPHAHMHHRHRHH---HHHHHPPAGSALDP 257
>gi|32307177 forkhead box G1 [Homo sapiens]
Length = 489
Score = 42.7 bits (99), Expect = 3e-04
Identities = 15/24 (62%), Positives = 15/24 (62%)
Query: 64 HPHHLSHHHCHHRHHHHLRHHAHP 87
H HH SHH HH HHHH HH P
Sbjct: 37 HGHHNSHHPQHHHHHHHHHHHPPP 60
Score = 40.0 bits (92), Expect = 0.002
Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 52 AVTQSAPEQGSFHPHHLSHHHCHHRHHHHLRHHAHPHHLHH 92
++ PE HH SH H H HH HH H HH HH
Sbjct: 19 SINSLVPEAVQNDNHHASHGH--HNSHHPQHHHHHHHHHHH 57
Score = 38.9 bits (89), Expect = 0.005
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 7/37 (18%)
Query: 70 HHHCHHRHH--HHLRHHAHPHHLHHQEAGLHANPVTP 104
+HH H HH HH +HH H HH HH H P P
Sbjct: 32 NHHASHGHHNSHHPQHHHHHHHHHH-----HPPPPAP 63
Score = 33.9 bits (76), Expect = 0.15
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 51 RAVTQSAPEQGSFHPHHLSHHHCHHRHHHHLRHHAHPHHLHHQEAGLHANPVTP 104
+ + +S+ S P + + + H H HH HH HH HH H +P P
Sbjct: 11 KMIPKSSFSINSLVPEAVQNDNHHASHGHHNSHHPQHHHHHHHH---HHHPPPP 61
>gi|37595553 ring finger protein 111 [Homo sapiens]
Length = 986
Score = 42.4 bits (98), Expect = 4e-04
Identities = 25/62 (40%), Positives = 30/62 (48%), Gaps = 10/62 (16%)
Query: 55 QSAPEQGSFHPHH-LSHHH--CHHRHHHHLRHHAHPHHLHHQEAGLHANPVTPCLC--MC 109
Q +P GS HH L H H C +H HH +HH H HH H A PV+P C
Sbjct: 483 QHSPCGGSSQNHHALGHPHTSCFQQHGHHFQHHHHHHHTPHP-----AVPVSPSFSDPAC 537
Query: 110 PL 111
P+
Sbjct: 538 PV 539
Score = 29.3 bits (64), Expect = 3.8
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Query: 40 PTHNLKYVSSRRAVTQSAPEQGSF--HPHHLSHHHCHHRHHHHLRHHAHP 87
P H+ SS+ P F H HH HH H HHHH H A P
Sbjct: 482 PQHSPCGGSSQNHHALGHPHTSCFQQHGHHFQHH--H--HHHHTPHPAVP 527
>gi|23308699 transcription factor MAFB [Homo sapiens]
Length = 323
Score = 41.6 bits (96), Expect = 7e-04
Identities = 20/48 (41%), Positives = 22/48 (45%), Gaps = 15/48 (31%)
Query: 62 SFHPHHLSHHHCHHRHHHHLRH--------------HAHPHHLHHQEA 95
SF +HHH HH HH H H HAHPHH HH +A
Sbjct: 123 SFDSFRGAHHH-HHHHHPHPHHAYPGAGVAHDELGPHAHPHHHHHHQA 169
Score = 33.1 bits (74), Expect = 0.26
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 7/31 (22%)
Query: 78 HHHLRH-HAHPHHLH------HQEAGLHANP 101
HHH H H HPHH + H E G HA+P
Sbjct: 131 HHHHHHHHPHPHHAYPGAGVAHDELGPHAHP 161
Score = 29.6 bits (65), Expect = 2.9
Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 16/44 (36%)
Query: 60 QGSFHPHHLSHHHCHHRH----------------HHHLRHHAHP 87
+G+ H HH H H HH + HHH H A P
Sbjct: 128 RGAHHHHHHHHPHPHHAYPGAGVAHDELGPHAHPHHHHHHQASP 171
>gi|239757043 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 996
Score = 41.6 bits (96), Expect = 7e-04
Identities = 15/24 (62%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 57 APEQGSFHPHHLSHHHCHHRHHHH 80
AP HPHH HHH HH HHHH
Sbjct: 646 APHSAQTHPHH--HHHPHHHHHHH 667
Score = 34.7 bits (78), Expect = 0.090
Identities = 12/23 (52%), Positives = 12/23 (52%)
Query: 65 PHHLSHHHCHHRHHHHLRHHAHP 87
PH H HH H HH HH HP
Sbjct: 647 PHSAQTHPHHHHHPHHHHHHHHP 669
Score = 31.2 bits (69), Expect = 0.99
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 7/36 (19%)
Query: 75 HRHHHHLRHHAHPHHLHHQEAGLHANPVTPCLCMCP 110
H HHHH HPHH HH P +P L + P
Sbjct: 653 HPHHHH-----HPHHHHHHHH--PPQPPSPLLLLPP 681
>gi|239751555 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 41.6 bits (96), Expect = 7e-04
Identities = 15/24 (62%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 57 APEQGSFHPHHLSHHHCHHRHHHH 80
AP HPHH HHH HH HHHH
Sbjct: 646 APHSAQTHPHH--HHHPHHHHHHH 667
Score = 34.7 bits (78), Expect = 0.090
Identities = 12/23 (52%), Positives = 12/23 (52%)
Query: 65 PHHLSHHHCHHRHHHHLRHHAHP 87
PH H HH H HH HH HP
Sbjct: 647 PHSAQTHPHHHHHPHHHHHHHHP 669
Score = 31.2 bits (69), Expect = 0.99
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 7/36 (19%)
Query: 75 HRHHHHLRHHAHPHHLHHQEAGLHANPVTPCLCMCP 110
H HHHH HPHH HH P +P L + P
Sbjct: 653 HPHHHH-----HPHHHHHHHH--PPQPPSPLLLLPP 681
>gi|239746067 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 41.6 bits (96), Expect = 7e-04
Identities = 15/24 (62%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 57 APEQGSFHPHHLSHHHCHHRHHHH 80
AP HPHH HHH HH HHHH
Sbjct: 646 APHSAQTHPHH--HHHPHHHHHHH 667
Score = 34.7 bits (78), Expect = 0.090
Identities = 12/23 (52%), Positives = 12/23 (52%)
Query: 65 PHHLSHHHCHHRHHHHLRHHAHP 87
PH H HH H HH HH HP
Sbjct: 647 PHSAQTHPHHHHHPHHHHHHHHP 669
Score = 31.2 bits (69), Expect = 0.99
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 7/36 (19%)
Query: 75 HRHHHHLRHHAHPHHLHHQEAGLHANPVTPCLCMCP 110
H HHHH HPHH HH P +P L + P
Sbjct: 653 HPHHHH-----HPHHHHHHHH--PPQPPSPLLLLPP 681
>gi|122937233 discs, large (Drosophila) homolog-associated protein 3
[Homo sapiens]
Length = 979
Score = 41.2 bits (95), Expect = 0.001
Identities = 16/29 (55%), Positives = 16/29 (55%)
Query: 56 SAPEQGSFHPHHLSHHHCHHRHHHHLRHH 84
S P GS PH HHH HH HHHH H
Sbjct: 210 SYPGPGSGGPHTSHHHHHHHHHHHHQSRH 238
Score = 30.8 bits (68), Expect = 1.3
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 74 HHRHHHHLRHHAHPHHLHH 92
H HHHH HH H H H
Sbjct: 220 HTSHHHHHHHHHHHHQSRH 238
Score = 29.3 bits (64), Expect = 3.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 64 HPHHLSHHHCHHRHHHHLR 82
H HH HHH HH+ H R
Sbjct: 223 HHHHHHHHHHHHQSRHGKR 241
>gi|27894361 nuclear receptor subfamily 4, group A, member 3 isoform
b [Homo sapiens]
Length = 637
Score = 41.2 bits (95), Expect = 0.001
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 59 EQGSFHPHHLSHHHCHHRHHHHLRHHAHP 87
E+G +H HHH HH HHHH + H P
Sbjct: 98 EEGRAPSYHHHHHHHHHHHHHHQQQHQQP 126
Score = 37.7 bits (86), Expect = 0.011
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 69 SHHHCHHRHHHHLRHHAHPH 88
S+HH HH HHHH HH H
Sbjct: 104 SYHHHHHHHHHHHHHHQQQH 123
Score = 35.8 bits (81), Expect = 0.040
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 74 HHRHHHHLRHHAHPHHLHHQEAGL 97
+H HHHH HH H H HQ+ +
Sbjct: 105 YHHHHHHHHHHHHHHQQQHQQPSI 128
Score = 28.5 bits (62), Expect = 6.4
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 57 APEQGSFHPHHLSHHHCHHRHH 78
AP H HH HHH H + H
Sbjct: 102 APSYHHHHHHHHHHHHHHQQQH 123
>gi|27894359 nuclear receptor subfamily 4, group A, member 3 isoform
c [Homo sapiens]
Length = 443
Score = 41.2 bits (95), Expect = 0.001
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 59 EQGSFHPHHLSHHHCHHRHHHHLRHHAHP 87
E+G +H HHH HH HHHH + H P
Sbjct: 87 EEGRAPSYHHHHHHHHHHHHHHQQQHQQP 115
Score = 37.7 bits (86), Expect = 0.011
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 69 SHHHCHHRHHHHLRHHAHPH 88
S+HH HH HHHH HH H
Sbjct: 93 SYHHHHHHHHHHHHHHQQQH 112
Score = 35.8 bits (81), Expect = 0.040
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 74 HHRHHHHLRHHAHPHHLHHQEAGL 97
+H HHHH HH H H HQ+ +
Sbjct: 94 YHHHHHHHHHHHHHHQQQHQQPSI 117
Score = 28.5 bits (62), Expect = 6.4
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 57 APEQGSFHPHHLSHHHCHHRHH 78
AP H HH HHH H + H
Sbjct: 91 APSYHHHHHHHHHHHHHHQQQH 112
>gi|27894357 nuclear receptor subfamily 4, group A, member 3 isoform
a [Homo sapiens]
Length = 626
Score = 41.2 bits (95), Expect = 0.001
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 59 EQGSFHPHHLSHHHCHHRHHHHLRHHAHP 87
E+G +H HHH HH HHHH + H P
Sbjct: 87 EEGRAPSYHHHHHHHHHHHHHHQQQHQQP 115
Score = 37.7 bits (86), Expect = 0.011
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 69 SHHHCHHRHHHHLRHHAHPH 88
S+HH HH HHHH HH H
Sbjct: 93 SYHHHHHHHHHHHHHHQQQH 112
Score = 35.8 bits (81), Expect = 0.040
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 74 HHRHHHHLRHHAHPHHLHHQEAGL 97
+H HHHH HH H H HQ+ +
Sbjct: 94 YHHHHHHHHHHHHHHQQQHQQPSI 117
Score = 28.5 bits (62), Expect = 6.4
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 57 APEQGSFHPHHLSHHHCHHRHH 78
AP H HH HHH H + H
Sbjct: 91 APSYHHHHHHHHHHHHHHQQQH 112
>gi|27894355 nuclear receptor subfamily 4, group A, member 3 isoform
a [Homo sapiens]
Length = 626
Score = 41.2 bits (95), Expect = 0.001
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 59 EQGSFHPHHLSHHHCHHRHHHHLRHHAHP 87
E+G +H HHH HH HHHH + H P
Sbjct: 87 EEGRAPSYHHHHHHHHHHHHHHQQQHQQP 115
Score = 37.7 bits (86), Expect = 0.011
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 69 SHHHCHHRHHHHLRHHAHPH 88
S+HH HH HHHH HH H
Sbjct: 93 SYHHHHHHHHHHHHHHQQQH 112
Score = 35.8 bits (81), Expect = 0.040
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 74 HHRHHHHLRHHAHPHHLHHQEAGL 97
+H HHHH HH H H HQ+ +
Sbjct: 94 YHHHHHHHHHHHHHHQQQHQQPSI 117
Score = 28.5 bits (62), Expect = 6.4
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 57 APEQGSFHPHHLSHHHCHHRHH 78
AP H HH HHH H + H
Sbjct: 91 APSYHHHHHHHHHHHHHHQQQH 112
>gi|14916427 naked cuticle homolog 2 [Homo sapiens]
Length = 451
Score = 40.8 bits (94), Expect = 0.001
Identities = 16/24 (66%), Positives = 16/24 (66%), Gaps = 4/24 (16%)
Query: 64 HPHHLSHHHCHHRHHHHLRHHAHP 87
H HH HHH HH HHHH HH HP
Sbjct: 431 HEHH--HHHEHHHHHHH--HHFHP 450
Score = 34.7 bits (78), Expect = 0.090
Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 68 LSHHHCHHRHHHHLRHHAHPHHLH 91
+ H HH H HH HH H HH H
Sbjct: 428 IQRHEHHHHHEHH--HHHHHHHFH 449
Score = 34.3 bits (77), Expect = 0.12
Identities = 11/19 (57%), Positives = 11/19 (57%)
Query: 74 HHRHHHHLRHHAHPHHLHH 92
H HHHH HH H HH H
Sbjct: 431 HEHHHHHEHHHHHHHHHFH 449
>gi|59938776 cAMP responsive element binding protein 5 isoform delta
[Homo sapiens]
Length = 369
Score = 40.4 bits (93), Expect = 0.002
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 42 HNLKYVSSRRAVT-----QSAPEQG-SFHPHH-LSHHHCHHRHHHHLR-HHAHPHHLHHQ 93
H ++ + SR+ T S P Q + PHH H H H HH H + HH H HH
Sbjct: 118 HMMEMMGSRQDQTPHHHMHSHPHQHQTLPPHHPYPHQHQHPAHHPHPQPHHQQNHPHHHS 177
Query: 94 EAGLHANP 101
+ LHA+P
Sbjct: 178 HSHLHAHP 185
Score = 38.5 bits (88), Expect = 0.006
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 64 HPHHLSHHHCHHRHHHHLRHHAHPHHLHHQ 93
HPH HH +H HHH H H H HHQ
Sbjct: 161 HPHPQPHHQQNHPHHHS-HSHLHAHPAHHQ 189
Score = 32.3 bits (72), Expect = 0.44
Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 58 PEQGSFHPHHLSHHHCHHRHHHHLRHHAHPHHLHHQEAGLHANPVT 103
P HPHH SH H H H H PH H +P T
Sbjct: 166 PHHQQNHPHHHSHSHL---HAHPAHHQTSPHPPLHTGNQAQVSPAT 208
>gi|59938774 cAMP responsive element binding protein 5 isoform beta
[Homo sapiens]
Length = 501
Score = 40.4 bits (93), Expect = 0.002
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 42 HNLKYVSSRRAVT-----QSAPEQG-SFHPHH-LSHHHCHHRHHHHLR-HHAHPHHLHHQ 93
H ++ + SR+ T S P Q + PHH H H H HH H + HH H HH
Sbjct: 250 HMMEMMGSRQDQTPHHHMHSHPHQHQTLPPHHPYPHQHQHPAHHPHPQPHHQQNHPHHHS 309
Query: 94 EAGLHANP 101
+ LHA+P
Sbjct: 310 HSHLHAHP 317
Score = 38.5 bits (88), Expect = 0.006
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 64 HPHHLSHHHCHHRHHHHLRHHAHPHHLHHQ 93
HPH HH +H HHH H H H HHQ
Sbjct: 293 HPHPQPHHQQNHPHHHS-HSHLHAHPAHHQ 321
Score = 32.3 bits (72), Expect = 0.44
Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 58 PEQGSFHPHHLSHHHCHHRHHHHLRHHAHPHHLHHQEAGLHANPVT 103
P HPHH SH H H H H PH H +P T
Sbjct: 298 PHHQQNHPHHHSHSHL---HAHPAHHQTSPHPPLHTGNQAQVSPAT 340
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.328 0.138 0.458
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,286,451
Number of Sequences: 37866
Number of extensions: 534907
Number of successful extensions: 5086
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 2172
Number of HSP's gapped (non-prelim): 1051
length of query: 269
length of database: 18,247,518
effective HSP length: 101
effective length of query: 168
effective length of database: 14,423,052
effective search space: 2423072736
effective search space used: 2423072736
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.