Guide to the Human Genome
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Name: SIAH1 Sequence: fasta or formatted (313aa) NCBI GI: 55749557
Description:

seven in absentia homolog 1 isoform b

Referenced in:

Calmodulin and Calcium
Ring Finger Proteins

Other entries for this name:
alt prot [282aa] seven in absentia homolog 1 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         24           2
 C cysteine            6.1         19           2
 D aspartate           3.2         10           1
 E glutamate           5.1         16           2
 F phenylalanine       4.5         14           2
 G glycine             6.1         19           1
 H histidine           3.2         10           1
 I isoleucine          4.5         14           1
 K lysine              4.2         13           1
 L leucine             9.6         30           1
 M methionine          3.2         10           2
 N asparagine          3.8         12           2
 P proline             6.7         21           2
 Q glutamine           4.5         14           2
 R arginine            5.1         16           3
 S serine              7.0         22           2
 T threonine           7.7         24           2
 V valine              4.8         15           1
 W tryptophan          1.3          4           1
 Y tyrosine            1.9          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   seven in absentia homolog 1 isoform b 
SIAH1                 0.897   seven in absentia homolog 1 isoform a 
SIAH2                 0.691   seven in absentia homolog 2 
SIAH3                 0.254   seven in absentia homolog 3 
RNF151                0.038   ring finger protein 151 
BIRC7                 0.032   livin inhibitor of apoptosis isoform alpha 
TRAF7                 0.028   TNF receptor-associated factor 7 
MIB2                  0.028   mindbomb homolog 2 
CYHR1                 0.028   cysteine/histidine-rich 1 isoform 1 
BIRC7                 0.027   livin inhibitor of apoptosis isoform beta 
TRIM50                0.027   tripartite motif protein 50A 
RNF114                0.024   zinc finger protein 313 
PDZRN3                0.024   PDZ domain containing ring finger 3 
ZFP36                 0.019   zinc finger protein 36, C3H type, homolog 
TRIM77                0.019   PREDICTED: tripartite motif-containing 77 
TRIM77                0.019   PREDICTED: tripartite motif-containing 77 
LOC100289112          0.019   PREDICTED: hypothetical protein XP_002343148 
TRIM77                0.019   tripartite motif-containing 77 
RNF166                0.019   ring finger protein 166 
RFWD2                 0.017   ring finger and WD repeat domain 2 isoform a 
RFWD2                 0.017   ring finger and WD repeat domain 2 isoform d24 [Homo...
BIRC2                 0.016   baculoviral IAP repeat-containing protein 2 
RING1                 0.016   ring finger protein 1 
TRAF6                 0.016   TNF receptor-associated factor 6 
TRAF6                 0.016   TNF receptor-associated factor 6 
MIB1                  0.016   mindbomb homolog 1 
SH3RF2                0.016   SH3 domain containing ring finger 2 
TRAF4                 0.016   TNF receptor-associated factor 4 
BIRC3                 0.016   baculoviral IAP repeat-containing protein 3 
BIRC3                 0.016   baculoviral IAP repeat-containing protein 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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