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Search of human proteins with 166795297
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|166795297 dynein, cytoplasmic 1, light intermediate chain 1
[Homo sapiens]
(523 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|166795297 dynein, cytoplasmic 1, light intermediate chain 1 [... 1052 0.0
gi|5453634 dynein, cytoplasmic, light intermediate polypeptide 2... 642 0.0
gi|40548413 dynein 2 light intermediate chain isoform 1 [Homo sa... 55 1e-07
gi|61102732 dynein 2 light intermediate chain isoform 3 [Homo sa... 55 1e-07
gi|29824427 dynein 2 light intermediate chain isoform 2 [Homo sa... 45 2e-04
gi|20143482 melanoma antigen family E, 1 [Homo sapiens] 40 0.004
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens] 40 0.005
gi|33620755 YEATS domain containing 2 [Homo sapiens] 38 0.020
gi|14249622 ajuba isoform 1 [Homo sapiens] 38 0.026
gi|193083191 synaptopodin 2 isoform c [Homo sapiens] 37 0.034
gi|39812496 Sp8 transcription factor isoform 1 [Homo sapiens] 37 0.044
gi|39812501 Sp8 transcription factor isoform 2 [Homo sapiens] 37 0.044
gi|194363768 homeobox D9 [Homo sapiens] 37 0.044
gi|49574532 glycogen synthase kinase 3 alpha [Homo sapiens] 37 0.044
gi|6912752 zinc finger protein 281 [Homo sapiens] 37 0.044
gi|9257222 forkhead box O1 [Homo sapiens] 37 0.057
gi|30061556 SRY (sex determining region Y)-box 3 [Homo sapiens] 37 0.057
gi|24586686 voltage-dependent calcium channel gamma-8 subunit [H... 37 0.057
gi|51702521 POU domain, class 3, transcription factor 2 [Homo sa... 36 0.075
gi|16554449 zonadhesin isoform 3 [Homo sapiens] 36 0.075
gi|27881494 zonadhesin isoform 6 [Homo sapiens] 36 0.075
gi|4885597 sine oculis homeobox homolog 3 [Homo sapiens] 36 0.098
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 36 0.098
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 36 0.098
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 36 0.098
gi|18375673 regulator of nonsense transcripts 1 [Homo sapiens] 36 0.098
gi|125858485 hypothetical protein LOC80209 isoform 2 [Homo sapiens] 36 0.098
gi|125656155 hypothetical protein LOC80209 isoform 1 [Homo sapiens] 36 0.098
gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated ... 36 0.098
gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated... 36 0.098
>gi|166795297 dynein, cytoplasmic 1, light intermediate chain 1
[Homo sapiens]
Length = 523
Score = 1052 bits (2721), Expect = 0.0
Identities = 523/523 (100%), Positives = 523/523 (100%)
Query: 1 MAAVGRVGSFGSSPPGLSSTYTGGPLGNEIASGNGGAAAGDDEDGQNLWSCILSEVSTRS 60
MAAVGRVGSFGSSPPGLSSTYTGGPLGNEIASGNGGAAAGDDEDGQNLWSCILSEVSTRS
Sbjct: 1 MAAVGRVGSFGSSPPGLSSTYTGGPLGNEIASGNGGAAAGDDEDGQNLWSCILSEVSTRS 60
Query: 61 RSKLPAGKNVLLLGEDGAGKTSLIRKIQGIEEYKKGRGLEYLYLNVHDEDRDDQTRCNVW 120
RSKLPAGKNVLLLGEDGAGKTSLIRKIQGIEEYKKGRGLEYLYLNVHDEDRDDQTRCNVW
Sbjct: 61 RSKLPAGKNVLLLGEDGAGKTSLIRKIQGIEEYKKGRGLEYLYLNVHDEDRDDQTRCNVW 120
Query: 121 ILDGDLYHKGLLKFSLDAVSLKDTLVMLVVDMSKPWTALDSLQKWASVVREHVDKLKIPP 180
ILDGDLYHKGLLKFSLDAVSLKDTLVMLVVDMSKPWTALDSLQKWASVVREHVDKLKIPP
Sbjct: 121 ILDGDLYHKGLLKFSLDAVSLKDTLVMLVVDMSKPWTALDSLQKWASVVREHVDKLKIPP 180
Query: 181 EEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVLPLGADTLTHNLGIPV 240
EEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVLPLGADTLTHNLGIPV
Sbjct: 181 EEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNTASQEDKDDSVVLPLGADTLTHNLGIPV 240
Query: 241 LVVCTKCDAISVLEKEHDYRDEHFDFIQSHIRKFCLQYGAALIYTSVKENKNIDLVYKYI 300
LVVCTKCDAISVLEKEHDYRDEHFDFIQSHIRKFCLQYGAALIYTSVKENKNIDLVYKYI
Sbjct: 241 LVVCTKCDAISVLEKEHDYRDEHFDFIQSHIRKFCLQYGAALIYTSVKENKNIDLVYKYI 300
Query: 301 VQKLYGFPYKIPAVVVEKDAVFIPAGWDNDKKIGILHENFQTLKAEDNFEDIITKPPVRK 360
VQKLYGFPYKIPAVVVEKDAVFIPAGWDNDKKIGILHENFQTLKAEDNFEDIITKPPVRK
Sbjct: 301 VQKLYGFPYKIPAVVVEKDAVFIPAGWDNDKKIGILHENFQTLKAEDNFEDIITKPPVRK 360
Query: 361 FVHEKEIMAEDDQVFLMKLQSLLAKQPPTAAGRPVDASPRVPGGSPRTPNRSVSSNVASV 420
FVHEKEIMAEDDQVFLMKLQSLLAKQPPTAAGRPVDASPRVPGGSPRTPNRSVSSNVASV
Sbjct: 361 FVHEKEIMAEDDQVFLMKLQSLLAKQPPTAAGRPVDASPRVPGGSPRTPNRSVSSNVASV 420
Query: 421 SPIPAGSKKIDPNMKAGATSEGVLANFFNSLLSKKTGSPGGPGVSGGSPAGGAGGGSSGL 480
SPIPAGSKKIDPNMKAGATSEGVLANFFNSLLSKKTGSPGGPGVSGGSPAGGAGGGSSGL
Sbjct: 421 SPIPAGSKKIDPNMKAGATSEGVLANFFNSLLSKKTGSPGGPGVSGGSPAGGAGGGSSGL 480
Query: 481 PPSTKKSGQKPVLDVHAELDRITRKPVTVSPTTPTSPTEGEAS 523
PPSTKKSGQKPVLDVHAELDRITRKPVTVSPTTPTSPTEGEAS
Sbjct: 481 PPSTKKSGQKPVLDVHAELDRITRKPVTVSPTTPTSPTEGEAS 523
>gi|5453634 dynein, cytoplasmic, light intermediate polypeptide 2
[Homo sapiens]
Length = 492
Score = 642 bits (1655), Expect = 0.0
Identities = 325/511 (63%), Positives = 392/511 (76%), Gaps = 21/511 (4%)
Query: 13 SPPGLSSTYTGGPLGNEIASGNGGAAAGDDEDGQNLWSCILSEVSTRSRSKLPAGKNVLL 72
+P G+ GP G +A+ G ++E+GQ+LWS ILSEVSTR+RSKLP+GKN+L+
Sbjct: 2 APVGVEKKLLLGPNGPAVAAA--GDLTSEEEEGQSLWSSILSEVSTRARSKLPSGKNILV 59
Query: 73 LGEDGAGKTSLIRKIQGIEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLL 132
GEDG+GKT+L+ K+QG E KKGRGLEYLYL+VHDEDRDD TRCNVWILDGDLYHKGLL
Sbjct: 60 FGEDGSGKTTLMTKLQGAEHGKKGRGLEYLYLSVHDEDRDDHTRCNVWILDGDLYHKGLL 119
Query: 133 KFSLDAVSLKDTLVMLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIR 192
KF++ A SL +TLV+ V DMS+PWT ++SLQKWASV+REH+DK+KIPPE+M+++E+K ++
Sbjct: 120 KFAVSAESLPETLVIFVADMSRPWTVMESLQKWASVLREHIDKMKIPPEKMRELERKFVK 179
Query: 193 DFQEYVEPGEDFPASPQRRNTASQEDKDDSVVLPLGADTLTHNLGIPVLVVCTKCDAISV 252
DFQ+Y+EP E SPQRR + +++V LPLG + LTHNLGIPVLVVCTKCDA+SV
Sbjct: 180 DFQDYMEPEEGCQGSPQRRGPLTSGSDEENVALPLGDNVLTHNLGIPVLVVCTKCDAVSV 239
Query: 253 LEKEHDYRDEHFDFIQSHIRKFCLQYGAALIYTSVKENKNIDLVYKYIVQKLYGFPYKIP 312
LEKEHDYRDEH DFIQSH+R+FCLQYGAALIYTSVKE KN+DL+YKYIV K YGF + P
Sbjct: 240 LEKEHDYRDEHLDFIQSHLRRFCLQYGAALIYTSVKEEKNLDLLYKYIVHKTYGFHFTTP 299
Query: 313 AVVVEKDAVFIPAGWDNDKKIGILHENFQTLKAEDNFEDIITKPPVRKFVHEKEIMAEDD 372
A+VVEKDAVFIPAGWDN+KKI ILHENF T+K ED +ED I KPPVRK VH+KE+ AED+
Sbjct: 300 ALVVEKDAVFIPAGWDNEKKIAILHENFTTVKPEDAYEDFIVKPPVRKLVHDKELAAEDE 359
Query: 373 QVFLMKLQSLLAKQPPTAAGRPVDASPRVPGGSPRTPNRSVSSNVASVSPIPAGSKKIDP 432
QVFLMK QSLLAKQP T R ++ R P GSPRT R ++V S SP KK DP
Sbjct: 360 QVFLMKQQSLLAKQPATPT-RASESPARGPSGSPRTQGRGGPASVPSSSP-GTSVKKPDP 417
Query: 433 NMKAGATSEGVLANFFNSLLSKKTGSPGGPGVSGGSPAGGAGGGSSGLPPSTKKSGQKPV 492
N+K A SEGVLA+FFNSLLSKKTGSPG P G+ G+ + KKSGQK V
Sbjct: 418 NIKNNAASEGVLASFFNSLLSKKTGSPGSP-------------GAGGVQSTAKKSGQKTV 464
Query: 493 L-DVHAELDRITRKPVTVSPTTPTSPTEGEA 522
L +V ELDR+TRKP ++ S TE EA
Sbjct: 465 LSNVQEELDRMTRKPDSM---VTNSSTENEA 492
>gi|40548413 dynein 2 light intermediate chain isoform 1 [Homo
sapiens]
Length = 351
Score = 55.5 bits (132), Expect = 1e-07
Identities = 67/301 (22%), Positives = 115/301 (38%), Gaps = 48/301 (15%)
Query: 46 QNLWSCILSEVSTRSRSKLP------AGKNVLLLGEDGAGKTSLI-RKIQGIEEYKKGRG 98
+ LW +EV R + A K V +G GKT++I R + E K
Sbjct: 4 ETLWEIAKAEVEKRGINGSEGDGAEIAEKFVFFIGSKNGGKTTIILRCLDRDEPPKPTLA 63
Query: 99 LEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLVMLVVDMSKPWTA 158
LEY Y + + W L G L+ + +L+ ++LV+D+SKP
Sbjct: 64 LEYTYGRRAKGHNTPKDIAHFWELGGGTSLLDLISIPITGDTLRTFSLVLVLDLSKPNDL 123
Query: 159 LDSLQKWASVVREHVDKL-----KIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNT 213
+++ + HVDK+ K + + +M QK+ N
Sbjct: 124 WPTMENLLQATKSHVDKVIMKLGKTNAKAVSEMRQKIW--------------------NN 163
Query: 214 ASQEDKDDSVVLPLGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFIQSHIRK 273
++ D ++ P +P++++ +K D D+ E I +R
Sbjct: 164 MPKDHPDHELIDPFP---------VPLVIIGSKYDVFQ------DFESEKRKVICKTLRF 208
Query: 274 FCLQYGAALIYTSVKENKNIDLVYKYIVQKLYGFPYKIPAVVVEKDAVFIPAGWDNDKKI 333
YGA+L++TS K + + I Q +G V + +FI AG D+ +I
Sbjct: 209 VAHYYGASLMFTS-KSEALLLKIRGVINQLAFGIDKSKSICVDQNKPLFITAGLDSFGQI 267
Query: 334 G 334
G
Sbjct: 268 G 268
>gi|61102732 dynein 2 light intermediate chain isoform 3 [Homo
sapiens]
Length = 334
Score = 55.5 bits (132), Expect = 1e-07
Identities = 67/301 (22%), Positives = 115/301 (38%), Gaps = 48/301 (15%)
Query: 46 QNLWSCILSEVSTRSRSKLP------AGKNVLLLGEDGAGKTSLI-RKIQGIEEYKKGRG 98
+ LW +EV R + A K V +G GKT++I R + E K
Sbjct: 4 ETLWEIAKAEVEKRGINGSEGDGAEIAEKFVFFIGSKNGGKTTIILRCLDRDEPPKPTLA 63
Query: 99 LEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLVMLVVDMSKPWTA 158
LEY Y + + W L G L+ + +L+ ++LV+D+SKP
Sbjct: 64 LEYTYGRRAKGHNTPKDIAHFWELGGGTSLLDLISIPITGDTLRTFSLVLVLDLSKPNDL 123
Query: 159 LDSLQKWASVVREHVDKL-----KIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQRRNT 213
+++ + HVDK+ K + + +M QK+ N
Sbjct: 124 WPTMENLLQATKSHVDKVIMKLGKTNAKAVSEMRQKIW--------------------NN 163
Query: 214 ASQEDKDDSVVLPLGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFIQSHIRK 273
++ D ++ P +P++++ +K D D+ E I +R
Sbjct: 164 MPKDHPDHELIDPFP---------VPLVIIGSKYDVFQ------DFESEKRKVICKTLRF 208
Query: 274 FCLQYGAALIYTSVKENKNIDLVYKYIVQKLYGFPYKIPAVVVEKDAVFIPAGWDNDKKI 333
YGA+L++TS K + + I Q +G V + +FI AG D+ +I
Sbjct: 209 VAHYYGASLMFTS-KSEALLLKIRGVINQLAFGIDKSKSICVDQNKPLFITAGLDSFGQI 267
Query: 334 G 334
G
Sbjct: 268 G 268
>gi|29824427 dynein 2 light intermediate chain isoform 2 [Homo
sapiens]
Length = 201
Score = 44.7 bits (104), Expect = 2e-04
Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 12/157 (7%)
Query: 46 QNLWSCILSEVSTRSRSKLP------AGKNVLLLGEDGAGKTSLI-RKIQGIEEYKKGRG 98
+ LW +EV R + A K V +G GKT++I R + E K
Sbjct: 4 ETLWEIAKAEVEKRGINGSEGDGAEIAEKFVFFIGSKNGGKTTIILRCLDRDEPPKPTLA 63
Query: 99 LEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVSLKDTLVMLVVDMSKPWTA 158
LEY Y + + W L G L+ + +L+ ++LV+D+SKP
Sbjct: 64 LEYTYGRRAKGHNTPKDIAHFWELGGGTSLLDLISIPITGDTLRTFSLVLVLDLSKPNDL 123
Query: 159 LDSLQKWASVVREHVDKL-----KIPPEEMKQMEQKL 190
+++ + HVDK+ K + + +M QK+
Sbjct: 124 WPTMENLLQATKSHVDKVIMKLGKTNAKAVSEMRQKI 160
>gi|20143482 melanoma antigen family E, 1 [Homo sapiens]
Length = 957
Score = 40.4 bits (93), Expect = 0.004
Identities = 41/149 (27%), Positives = 59/149 (39%), Gaps = 7/149 (4%)
Query: 380 QSLLAKQPPTAAGRPVDASPRVPGGSPRTPNRSVSSNVASVSPIPAGSKKIDPNMKAGAT 439
+ L PPT P + P PG P T +S+ S+S +P K ++ AT
Sbjct: 242 EGLSTPVPPTRDEGPSTSVPATPGEGPSTSVLPAASDGQSISLVPTRGKGSSTSVPPTAT 301
Query: 440 ---SEGVLANFFNSLLSKKTGSPGGPGVSGGSPAGGAGGGSSGLPPSTKKSGQKPVLDVH 496
S V + +PGG G+S P S+ +PP+ + VL +
Sbjct: 302 EGLSTSVQPTAGEGSSTSVPPTPGG-GLSTSVPPTATEELSTSVPPTPGEGPSTSVLPIP 360
Query: 497 AELDRITRKPVTVSPTTPTS--PTEGEAS 523
E T P T S + TS PT GE +
Sbjct: 361 GE-GLSTSVPPTASDGSDTSVPPTPGEGA 388
>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
Length = 1192
Score = 40.0 bits (92), Expect = 0.005
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 16/115 (13%)
Query: 396 DASPRVPGGSPR------TPNRSVSSNVASVSPI----PAGSKKIDPNMKAG------AT 439
D P P GSP TP+ + + AS P P + P +K G +T
Sbjct: 280 DLHPGPPAGSPPPLTLPPTPSPATAVTAASAQPPGPAPPITLEPPAPGLKRGREGGRAST 339
Query: 440 SEGVLANFFNSLLSKKTGSPGGPGVSGGSPAGGAGGGSSGLPPSTKKSGQKPVLD 494
+ + F + + +K TG P G G G P+ +G GS L + ++ K V++
Sbjct: 340 RDRKMLKFISGIFTKSTGGPPGSGPLPGPPSLSSGSGSRELLGAELRASPKAVIN 394
Score = 33.1 bits (74), Expect = 0.64
Identities = 41/166 (24%), Positives = 64/166 (38%), Gaps = 45/166 (27%)
Query: 388 PTAAGRPVDASP---------RVPGGSP--RTPNRSVSSNVASVSPIP------------ 424
PT++ RP+ +SP R GG P +P+ S V+P P
Sbjct: 137 PTSSRRPLLSSPSWGGPEPEGRAGGGIPGSSSPHPGTGSRRLKVAPPPPAPKPCKTVTTS 196
Query: 425 ---------AGSK------KIDPNMKAGATSEGVLANFFNSLLSKKTGSPGGPGVSGGSP 469
AGS+ + P +K +S G A S+ + T + G G S S
Sbjct: 197 GAKAGGGKGAGSRLSWPESEGKPRVKGSKSSAGTGA----SVSAAATAAAAGGGGSTAST 252
Query: 470 AGGAGGGSSGLPPSTKKSGQKPVL---DVHAELDRITRKPVTVSPT 512
+GG G G+ + + G+ L D+H + P+T+ PT
Sbjct: 253 SGGVGAGAGARGKLSPRKGKSKTLDNSDLHPGPPAGSPPPLTLPPT 298
>gi|33620755 YEATS domain containing 2 [Homo sapiens]
Length = 1422
Score = 38.1 bits (87), Expect = 0.020
Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 13/115 (11%)
Query: 383 LAKQPPTAAGRPVDASPRVPGGSPRTPNRSVSSNVASVSPIPAGSKKIDPNMKAGATSEG 442
L K TAAG S GS + ++N+A+++ +P G+K + +G
Sbjct: 717 LTKAQVTAAGPQKSGSQ----GSVMATLQLPATNLANLANLPPGTKLYLTTNSKNPSGKG 772
Query: 443 ---------VLANFFNSLLSKKTGSPGGPGVSGGSPAGGAGGGSSGLPPSTKKSG 488
+L N+ L + + GG G GG GG GG SG ST G
Sbjct: 773 KLLLIPQGAILRATNNANLQSGSAASGGSGAGGGGGGGGGGGSGSGGGGSTGGGG 827
>gi|14249622 ajuba isoform 1 [Homo sapiens]
Length = 538
Score = 37.7 bits (86), Expect = 0.026
Identities = 42/134 (31%), Positives = 55/134 (41%), Gaps = 19/134 (14%)
Query: 381 SLLAKQPPTAA-----GRPVD--ASPRVPGGSPRTPNRSVSSNVASVSPIPAGSKKIDPN 433
S A PPT A P D P P SPR+ S S++ AS P GS +D
Sbjct: 88 SFPAGPPPTRALPLPQSLPPDFRLEPTAPALSPRSSFASSSASDASKPSSPRGSLLLDGA 147
Query: 434 MKAGATSEGVLANFFNSL---LSKKTGS--PGGPGVSGGSPAGGAGGGSSGLPPSTKKSG 488
GA +N + + ++ GS P GP + G AG G S G PS
Sbjct: 148 GAGGAGGSRPCSNRTSGISMGYDQRHGSPLPAGPCLFGPPLAGAPAGYSPGGVPSAYP-- 205
Query: 489 QKPVLDVHAELDRI 502
++HA LDR+
Sbjct: 206 -----ELHAALDRL 214
>gi|193083191 synaptopodin 2 isoform c [Homo sapiens]
Length = 1109
Score = 37.4 bits (85), Expect = 0.034
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 391 AGRPVDASPRVPGGSPRTPNRSVSSNVASVSPIPAGSKK-----IDPNMKAGATSEGVLA 445
A PV ASP VP G P +P + +S+ V+P P S K I K+G S+ ++
Sbjct: 1040 ASSPVSASP-VPVGIPTSPKQESASSSYFVAPRPKFSAKKSGVTIQVKCKSGIHSQDIIR 1098
Query: 446 NFFNSLLSKKT 456
+F + LS T
Sbjct: 1099 TYFPAYLSSST 1109
>gi|39812496 Sp8 transcription factor isoform 1 [Homo sapiens]
Length = 508
Score = 37.0 bits (84), Expect = 0.044
Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 21/100 (21%)
Query: 403 GGSPRTPNRSVSSNVASVSPIPAGSKKIDPNMKAGATSEGVLANFFNSLLSKKTGSPGGP 462
GGSP + S++S+ A+ + A A A S AN ++ + P
Sbjct: 108 GGSPGSSAFSLTSSSAAAAAAAA----------AAAASSSPFANDYSVFQA--------P 149
Query: 463 GVSGGSPAGGAGGGSSGLPPSTKKSGQKPVL--DVHAELD 500
GVSGGS GG GGG G ++ +PV VH +D
Sbjct: 150 GVSGGS-GGGGGGGGGGSSAHSQDGSHQPVFISKVHTSVD 188
>gi|39812501 Sp8 transcription factor isoform 2 [Homo sapiens]
Length = 490
Score = 37.0 bits (84), Expect = 0.044
Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 21/100 (21%)
Query: 403 GGSPRTPNRSVSSNVASVSPIPAGSKKIDPNMKAGATSEGVLANFFNSLLSKKTGSPGGP 462
GGSP + S++S+ A+ + A A A S AN ++ + P
Sbjct: 90 GGSPGSSAFSLTSSSAAAAAAAA----------AAAASSSPFANDYSVFQA--------P 131
Query: 463 GVSGGSPAGGAGGGSSGLPPSTKKSGQKPVL--DVHAELD 500
GVSGGS GG GGG G ++ +PV VH +D
Sbjct: 132 GVSGGS-GGGGGGGGGGSSAHSQDGSHQPVFISKVHTSVD 170
>gi|194363768 homeobox D9 [Homo sapiens]
Length = 352
Score = 37.0 bits (84), Expect = 0.044
Identities = 52/173 (30%), Positives = 66/173 (38%), Gaps = 33/173 (19%)
Query: 370 EDDQVFLMKLQSLLAKQPPTAAGRPVDAS--PRVPGG-------SPRTPNRSVS-SNVAS 419
E D+VF + P A GRP + P +PR+ S S S V S
Sbjct: 29 EGDEVFAARF----GPPGPGAQGRPAGVADGPAATAAEFASCSFAPRSAVFSASWSAVPS 84
Query: 420 VSPIPAGSKKI------DPNMKAGATSEGVLANFFNSLLSKKTGSPGGPGVSGGSPAGGA 473
P A + P + A A+ G + S + G PGG G GG GG
Sbjct: 85 QPPAAAAMSGLYHPYVPPPPLAASASEPG---RYVRSWMEPLPGFPGGAG--GG---GGG 136
Query: 474 GGGSSGLPPSTKKSGQKPVLDVHAELDRITR---KPVTVSPTTPTSPTEGEAS 523
GGG G PS SG P H + TR P T + TT +S T +S
Sbjct: 137 GGGGPGRGPSPGPSG--PANGRHYGIKPETRAAPAPATAASTTSSSSTSLSSS 187
>gi|49574532 glycogen synthase kinase 3 alpha [Homo sapiens]
Length = 483
Score = 37.0 bits (84), Expect = 0.044
Identities = 28/87 (32%), Positives = 34/87 (39%), Gaps = 8/87 (9%)
Query: 402 PGGSPRTPNRSVSS---NVASVSPIPAGSKKIDPNMKAGATSEGVLANFFNSLLSKKTGS 458
PGGS R S + P GS G S G + + + S
Sbjct: 11 PGGSGRARTSSFAEPGGGGGGGGGGPGGSASGPGGTGGGKASVGAMGGGVGA-----SSS 65
Query: 459 PGGPGVSGGSPAGGAGGGSSGLPPSTK 485
GGPG SGG +GG G G+S PP K
Sbjct: 66 GGGPGGSGGGGSGGPGAGTSFPPPGVK 92
>gi|6912752 zinc finger protein 281 [Homo sapiens]
Length = 895
Score = 37.0 bits (84), Expect = 0.044
Identities = 16/24 (66%), Positives = 16/24 (66%)
Query: 456 TGSPGGPGVSGGSPAGGAGGGSSG 479
TGS GG G GG GG GGGSSG
Sbjct: 14 TGSSGGSGSGGGGSGGGGGGGSSG 37
Score = 29.3 bits (64), Expect = 9.2
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 460 GGPGVSGGSPAGGAGGGSSG 479
GG G SGGS +GG G G G
Sbjct: 12 GGTGSSGGSGSGGGGSGGGG 31
>gi|9257222 forkhead box O1 [Homo sapiens]
Length = 655
Score = 36.6 bits (83), Expect = 0.057
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 415 SNVASVSPIPAGSKKIDPNMKAG---ATSEGVLANFFN--SLLSKKTGSPGGPGVSGGSP 469
SN A+ SP P+GS +P+ AG A++ V A+F + SLL + P PG +
Sbjct: 35 SNSATSSPAPSGSAAANPDAAAGLPSASAAAVSADFMSNLSLLEESEDFPQAPGSVAAAV 94
Query: 470 AGGAGGGSSG 479
A A ++G
Sbjct: 95 AAAAAAAATG 104
>gi|30061556 SRY (sex determining region Y)-box 3 [Homo sapiens]
Length = 446
Score = 36.6 bits (83), Expect = 0.057
Identities = 31/106 (29%), Positives = 44/106 (41%), Gaps = 11/106 (10%)
Query: 383 LAKQPPTAAGRPVDASPRVPGGSPRTPNRSVSSNVASVSPIPAGSKKIDPNMKAGATSEG 442
LA +PP++A V +P P S + +A + P PA ++ +K +
Sbjct: 35 LAHRPPSSAPTESQGLFTVAAPAPGAP--SPPATLAHLLPAPAMYSLLETELKNPVGTPT 92
Query: 443 VLANFFNSLLSKKTGSPGGPGVSGGSPAGGAGGGSSGLPPSTKKSG 488
A TG P PG +G S A AGG +SG S SG
Sbjct: 93 QAAG---------TGGPAAPGGAGKSSANAAGGANSGGGSSGGASG 129
>gi|24586686 voltage-dependent calcium channel gamma-8 subunit [Homo
sapiens]
Length = 425
Score = 36.6 bits (83), Expect = 0.057
Identities = 35/124 (28%), Positives = 45/124 (36%), Gaps = 23/124 (18%)
Query: 396 DASPRVPGGSPRTPNRSVSSNVASVSPIPAGSKKIDPNMKAGATSEGVLANFFNSLLSKK 455
DASP PGG P + +S S P ++ AG G
Sbjct: 288 DASPGGPGG-PGFASTDISMYTLSRDPSKG-------SVAAGLAGAG------------- 326
Query: 456 TGSPGGPGVSGGSP--AGGAGGGSSGLPPSTKKSGQKPVLDVHAELDRITRKPVTVSPTT 513
G G G GG+ AGG GGG G + G L +H + VTV+ T
Sbjct: 327 GGGGGAVGAFGGAAGGAGGGGGGGGGAGAERDRGGASGFLTLHNAFPKEAGGGVTVTVTG 386
Query: 514 PTSP 517
P +P
Sbjct: 387 PPAP 390
>gi|51702521 POU domain, class 3, transcription factor 2 [Homo
sapiens]
Length = 443
Score = 36.2 bits (82), Expect = 0.075
Identities = 17/36 (47%), Positives = 18/36 (50%)
Query: 457 GSPGGPGVSGGSPAGGAGGGSSGLPPSTKKSGQKPV 492
G GG G GG GG GGG G P ST GQ +
Sbjct: 68 GGGGGGGGGGGGGGGGGGGGGDGSPWSTSPLGQPDI 103
>gi|16554449 zonadhesin isoform 3 [Homo sapiens]
Length = 2812
Score = 36.2 bits (82), Expect = 0.075
Identities = 37/160 (23%), Positives = 65/160 (40%), Gaps = 16/160 (10%)
Query: 364 EKEIMAEDDQVFLMKLQSLLAKQPPTAAGRPVDAS--PRVPGGSPRTPNRSVSSNVASVS 421
EK + + L + ++ +++P + +P ++ P VP P TP ++++
Sbjct: 617 EKPTIPSEKPTILTEKPTIPSEKPTIPSEKPTISTEKPTVPTEEPTTPTEETTTSMEE-- 674
Query: 422 PIPAGSKKIDPNMKAGATSEGVLANFFNSLLS--KKTGSPGGPGVSGGSPAGGAGGGSSG 479
P+ K P K +E + +++S K T SP P + P +
Sbjct: 675 PVIPTEKPSIPTEKPSIPTEKPTISMEETIISTEKPTISPEKPTIPTEKPTIPTEKSTIS 734
Query: 480 LPPSTKKSGQKPVLDVHAELDRITRKPVTVSPTTPTSPTE 519
P +KP + T KP T+SP PT+PTE
Sbjct: 735 -PEKPTTPTEKPTIP--------TEKP-TISPEKPTTPTE 764
>gi|27881494 zonadhesin isoform 6 [Homo sapiens]
Length = 2721
Score = 36.2 bits (82), Expect = 0.075
Identities = 37/160 (23%), Positives = 65/160 (40%), Gaps = 16/160 (10%)
Query: 364 EKEIMAEDDQVFLMKLQSLLAKQPPTAAGRPVDAS--PRVPGGSPRTPNRSVSSNVASVS 421
EK + + L + ++ +++P + +P ++ P VP P TP ++++
Sbjct: 617 EKPTIPSEKPTILTEKPTIPSEKPTIPSEKPTISTEKPTVPTEEPTTPTEETTTSMEE-- 674
Query: 422 PIPAGSKKIDPNMKAGATSEGVLANFFNSLLS--KKTGSPGGPGVSGGSPAGGAGGGSSG 479
P+ K P K +E + +++S K T SP P + P +
Sbjct: 675 PVIPTEKPSIPTEKPSIPTEKPTISMEETIISTEKPTISPEKPTIPTEKPTIPTEKSTIS 734
Query: 480 LPPSTKKSGQKPVLDVHAELDRITRKPVTVSPTTPTSPTE 519
P +KP + T KP T+SP PT+PTE
Sbjct: 735 -PEKPTTPTEKPTIP--------TEKP-TISPEKPTTPTE 764
>gi|4885597 sine oculis homeobox homolog 3 [Homo sapiens]
Length = 332
Score = 35.8 bits (81), Expect = 0.098
Identities = 20/44 (45%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 457 GSPGGPGVSGGSP--AGGAGGGSSGLPPSTKKSGQKPVLDVHAE 498
GS GG G GG AGG GGG S PP Q P L+ E
Sbjct: 47 GSGGGNGAGGGGAGGAGGGGGGGSRAPPEELSMFQLPTLNFSPE 90
Score = 29.3 bits (64), Expect = 9.2
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 439 TSEGVLANFFNS----LLSKKTGSPGGPGVSGGSPAGGAGGGSSG 479
+S +L NF +S +L +G GG G GG AGG GG +G
Sbjct: 11 SSHFLLPNFADSHHRSILLASSG--GGNGAGGGGGAGGGSGGGNG 53
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 35.8 bits (81), Expect = 0.098
Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 14/111 (12%)
Query: 390 AAGRPVDASPRV--PGGSPRTPNRSVSSNVASVSPIPAGSKKIDPNMKAGATSEGVLANF 447
AA P DA P R P ++ A +P+P P +++G+ +
Sbjct: 654 AASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPLPW------PPATGPGSADGLCTIY 707
Query: 448 FNSLLSKKTGSPGG------PGVSGGSPAGGAGGGSSGLPPSTKKSGQKPV 492
T +PG PG SGG A GAG G+S P + G+ P+
Sbjct: 708 ETEGPESATPAPGALDPGPSPGTSGGKAAAGAGAGASSRSPKQARLGELPL 758
Score = 34.7 bits (78), Expect = 0.22
Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 5/90 (5%)
Query: 394 PVDASPRVPGGSPRTPNRSVSSNVASVSPIPAGSKKIDPNMKAGATSEGVL-ANFFNSLL 452
P A+P PG P+ S A+ S + + G G L A+ LL
Sbjct: 712 PESATP-APGALDPGPSPGTSGGKAAAGAGAGASSRSPKQARLGELPLGALQASVVQHLL 770
Query: 453 SKK---TGSPGGPGVSGGSPAGGAGGGSSG 479
S+ + G G SGG P G GGG +G
Sbjct: 771 SRTLLLAAAEGAAGGSGGGPGGAEGGGVTG 800
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapiens]
Length = 1124
Score = 35.8 bits (81), Expect = 0.098
Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 14/111 (12%)
Query: 390 AAGRPVDASPRV--PGGSPRTPNRSVSSNVASVSPIPAGSKKIDPNMKAGATSEGVLANF 447
AA P DA P R P ++ A +P+P P +++G+ +
Sbjct: 923 AASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPLPW------PPATGPGSADGLCTIY 976
Query: 448 FNSLLSKKTGSPGG------PGVSGGSPAGGAGGGSSGLPPSTKKSGQKPV 492
T +PG PG SGG A GAG G+S P + G+ P+
Sbjct: 977 ETEGPESATPAPGALDPGPSPGTSGGKAAAGAGAGASSRSPKQARLGELPL 1027
Score = 34.7 bits (78), Expect = 0.22
Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 5/90 (5%)
Query: 394 PVDASPRVPGGSPRTPNRSVSSNVASVSPIPAGSKKIDPNMKAGATSEGVL-ANFFNSLL 452
P A+P PG P+ S A+ S + + G G L A+ LL
Sbjct: 981 PESATP-APGALDPGPSPGTSGGKAAAGAGAGASSRSPKQARLGELPLGALQASVVQHLL 1039
Query: 453 SKK---TGSPGGPGVSGGSPAGGAGGGSSG 479
S+ + G G SGG P G GGG +G
Sbjct: 1040 SRTLLLAAAEGAAGGSGGGPGGAEGGGVTG 1069
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 35.8 bits (81), Expect = 0.098
Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 14/111 (12%)
Query: 390 AAGRPVDASPRV--PGGSPRTPNRSVSSNVASVSPIPAGSKKIDPNMKAGATSEGVLANF 447
AA P DA P R P ++ A +P+P P +++G+ +
Sbjct: 615 AASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPLPW------PPATGPGSADGLCTIY 668
Query: 448 FNSLLSKKTGSPGG------PGVSGGSPAGGAGGGSSGLPPSTKKSGQKPV 492
T +PG PG SGG A GAG G+S P + G+ P+
Sbjct: 669 ETEGPESATPAPGALDPGPSPGTSGGKAAAGAGAGASSRSPKQARLGELPL 719
Score = 34.7 bits (78), Expect = 0.22
Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 5/90 (5%)
Query: 394 PVDASPRVPGGSPRTPNRSVSSNVASVSPIPAGSKKIDPNMKAGATSEGVL-ANFFNSLL 452
P A+P PG P+ S A+ S + + G G L A+ LL
Sbjct: 673 PESATP-APGALDPGPSPGTSGGKAAAGAGAGASSRSPKQARLGELPLGALQASVVQHLL 731
Query: 453 SKK---TGSPGGPGVSGGSPAGGAGGGSSG 479
S+ + G G SGG P G GGG +G
Sbjct: 732 SRTLLLAAAEGAAGGSGGGPGGAEGGGVTG 761
Score = 29.6 bits (65), Expect = 7.0
Identities = 33/136 (24%), Positives = 48/136 (35%), Gaps = 8/136 (5%)
Query: 390 AAGRPVDASPRVPGGSPRTPNRSVSSNVASVS------PIPAGSKKIDPNMKAGATSEGV 443
AAG V P PR P +V+S S P PA ++ +
Sbjct: 173 AAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRS 232
Query: 444 LANFFNSLLSKKTGSPGGPGVSGGSPAGGAGGGSSGLPPSTKKSGQKPVLDVHAELDRIT 503
L++ L S P G + +PA + GL P D L ++
Sbjct: 233 LSSSATPLSSPARSGPSARG-TPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLS 291
Query: 504 RKPV-TVSPTTPTSPT 518
P+ T SP+ P SP+
Sbjct: 292 SSPLATPSPSAPPSPS 307
>gi|18375673 regulator of nonsense transcripts 1 [Homo sapiens]
Length = 1118
Score = 35.8 bits (81), Expect = 0.098
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 437 GATSEGVLANFFNSLLSKKTGSP-GGPGVSGGSPAGGAGGGSSG 479
GA ++G F + L +T +P GGPG GG AGG GG +G
Sbjct: 25 GADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGAGGPGGAGAG 68
>gi|125858485 hypothetical protein LOC80209 isoform 2 [Homo sapiens]
Length = 922
Score = 35.8 bits (81), Expect = 0.098
Identities = 30/110 (27%), Positives = 44/110 (40%), Gaps = 3/110 (2%)
Query: 380 QSLLAKQPPTAAGRPVDASPRVPGGSPRTPNRSVSSNVASVSPIPAGSKKIDPNMKAGAT 439
Q L+ P+ G V +P V P P S VA+V+P+P + P
Sbjct: 756 QGPLSSSNPSYPGFSVSNTPSVTPALPSFPGLQAPSTVAAVTPLPVAATAPSPAPVLPGF 815
Query: 440 SEGVLANFFNSLLSKKTGSPGGPGVSGGSPAGG--AGGGSSGLPPSTKKS 487
+ +N FNS L + G G +G S G + G G P + +S
Sbjct: 816 ASAFSSN-FNSALVAQAGLSSGLQAAGSSVFPGLLSLPGIPGFPQNPSQS 864
>gi|125656155 hypothetical protein LOC80209 isoform 1 [Homo sapiens]
Length = 944
Score = 35.8 bits (81), Expect = 0.098
Identities = 30/110 (27%), Positives = 44/110 (40%), Gaps = 3/110 (2%)
Query: 380 QSLLAKQPPTAAGRPVDASPRVPGGSPRTPNRSVSSNVASVSPIPAGSKKIDPNMKAGAT 439
Q L+ P+ G V +P V P P S VA+V+P+P + P
Sbjct: 778 QGPLSSSNPSYPGFSVSNTPSVTPALPSFPGLQAPSTVAAVTPLPVAATAPSPAPVLPGF 837
Query: 440 SEGVLANFFNSLLSKKTGSPGGPGVSGGSPAGG--AGGGSSGLPPSTKKS 487
+ +N FNS L + G G +G S G + G G P + +S
Sbjct: 838 ASAFSSN-FNSALVAQAGLSSGLQAAGSSVFPGLLSLPGIPGFPQNPSQS 886
>gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated
with lethal yellow) long isoform [Homo sapiens]
Length = 306
Score = 35.8 bits (81), Expect = 0.098
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 457 GSPGGPGVSGGSPAGGAGGGSSGLPPSTKKS 487
G GG G SGG +GG GGG S PP+ +++
Sbjct: 231 GGGGGGGGSGGGGSGGGGGGGSSRPPAPQEN 261
>gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated
with lethal yellow) short isoform [Homo sapiens]
Length = 290
Score = 35.8 bits (81), Expect = 0.098
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 457 GSPGGPGVSGGSPAGGAGGGSSGLPPSTKKS 487
G GG G SGG +GG GGG S PP+ +++
Sbjct: 215 GGGGGGGGSGGGGSGGGGGGGSSRPPAPQEN 245
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.134 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,370,832
Number of Sequences: 37866
Number of extensions: 1259903
Number of successful extensions: 9683
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 274
Number of HSP's that attempted gapping in prelim test: 7494
Number of HSP's gapped (non-prelim): 1930
length of query: 523
length of database: 18,247,518
effective HSP length: 107
effective length of query: 416
effective length of database: 14,195,856
effective search space: 5905476096
effective search space used: 5905476096
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.