Guide to the Human Genome
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Name: SP8 Sequence: fasta or formatted (508aa) NCBI GI: 39812496
Description:

Sp8 transcription factor isoform 1

Referenced in:

Kruppel-related Zinc Finger Proteins

Other entries for this name:
alt prot [490aa] Sp8 transcription factor isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.8         65          14
 C cysteine            2.6         13           1
 D aspartate           3.0         15           1
 E glutamate           2.6         13           2
 F phenylalanine       3.1         16           1
 G glycine            15.4         78          10
 H histidine           4.7         24           1
 I isoleucine          1.0          5           1
 K lysine              3.3         17           2
 L leucine             7.1         36           2
 M methionine          1.2          6           1
 N asparagine          2.2         11           1
 P proline             7.5         38           2
 Q glutamine           2.0         10           1
 R arginine            4.1         21           2
 S serine             18.3         93           6
 T threonine           2.8         14           1
 V valine              3.5         18           2
 W tryptophan          1.4          7           2
 Y tyrosine            1.6          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Sp8 transcription factor isoform 1 
SP8                   0.967   Sp8 transcription factor isoform 2 
SP9                   0.495   Sp9 transcription factor homolog 
SP7                   0.265   osterix 
SP6                   0.223   Sp6 transcription factor 
SP1                   0.171   Sp1 transcription factor isoform a 
SP1                   0.171   Sp1 transcription factor isoform b 
SP4                   0.171   Sp4 transcription factor 
SP5                   0.168   Sp5 transcription factor 
SP3                   0.166   Sp3 transcription factor isoform 2 
SP3                   0.166   Sp3 transcription factor isoform 1 
SP2                   0.138   Sp2 transcription factor 
KLF13                 0.138   Kruppel-like factor 13 
KLF14                 0.124   Kruppel-like factor 14 
KLF16                 0.122   BTE-binding protein 4 
KLF10                 0.112   Kruppel-like factor 10 isoform b 
KLF10                 0.112   Kruppel-like factor 10 isoform a 
KLF9                  0.112   Kruppel-like factor 9 
KLF15                 0.110   Kruppel-like factor 15 
KLF11                 0.107   Kruppel-like factor 11 
KLF1                  0.105   Kruppel-like factor 1 (erythroid) 
KLF5                  0.098   Kruppel-like factor 5 
KLF6                  0.097   Kruppel-like factor 6 isoform A 
KLF4                  0.094   Kruppel-like factor 4 (gut) 
KLF2                  0.094   Kruppel-like factor 
KLF8                  0.091   Kruppel-like factor 8 isoform 1 
KLF7                  0.088   Kruppel-like factor 7 (ubiquitous) 
KLF3                  0.088   Kruppel-like factor 3 (basic) 
KLF12                 0.084   Kruppel-like factor 12 
KLF17                 0.084   zinc finger protein 393 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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