Guide to the Human Genome
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Name: ANKRD13C Sequence: fasta or formatted (541aa) NCBI GI: 166795254
Description:

ankyrin repeat domain 13C

Referenced in:

Ankyrin Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         38           4
 C cysteine            1.3          7           1
 D aspartate           5.2         28           2
 E glutamate           8.1         44           3
 F phenylalanine       4.8         26           1
 G glycine             5.9         32           2
 H histidine           3.5         19           3
 I isoleucine          5.4         29           1
 K lysine              6.7         36           2
 L leucine            10.5         57           3
 M methionine          1.8         10           1
 N asparagine          4.3         23           1
 P proline             6.1         33           3
 Q glutamine           3.5         19           2
 R arginine            5.7         31           2
 S serine              7.4         40           2
 T threonine           5.0         27           2
 V valine              5.0         27           2
 W tryptophan          0.9          5           1
 Y tyrosine            1.8         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ankyrin repeat domain 13C 
ANKRD13A              0.214   ankyrin repeat domain 13 
ANKRD13B              0.198   ankyrin repeat domain 13B 
ANKRD13D              0.142   ankyrin repeat domain 13 family, member D 
TNKS                  0.028   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
TNKS2                 0.027   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
ANKRD12               0.025   ankyrin repeat domain 12 isoform 2 
ANKRD12               0.025   ankyrin repeat domain 12 isoform 1 
ANK1                  0.025   ankyrin 1 isoform 9 
ANK1                  0.025   ankyrin 1 isoform 1 
ANK1                  0.025   ankyrin 1 isoform 3 
ANK1                  0.025   ankyrin 1 isoform 2 
ANK1                  0.025   ankyrin 1 isoform 4 
ASB13                 0.025   ankyrin repeat and SOCS box-containing protein 13 [H...
ANKS1A                0.025   ankyrin repeat and sterile alpha motif domain conta...
ASB10                 0.025   ankyrin repeat and SOCS box-containing 10 isoform 2...
ASB10                 0.025   ankyrin repeat and SOCS box-containing 10 isoform 1...
ASB10                 0.025   ankyrin repeat and SOCS box-containing 10 isoform 3...
MYO16                 0.023   myosin heavy chain Myr 8 
TNNI3K                0.023   TNNI3 interacting kinase isoform b 
TNNI3K                0.023   TNNI3 interacting kinase isoform a 
ANKRD28               0.022   ankyrin repeat domain 28 
RAI14                 0.022   retinoic acid induced 14 isoform d 
RAI14                 0.022   retinoic acid induced 14 isoform c 
RAI14                 0.022   retinoic acid induced 14 isoform b 
RAI14                 0.022   retinoic acid induced 14 isoform a 
RAI14                 0.022   retinoic acid induced 14 isoform a 
RAI14                 0.022   retinoic acid induced 14 isoform a 
NRARP                 0.022   NOTCH-regulated ankyrin repeat protein 
RIPK4                 0.022   ankyrin repeat domain 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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