Guide to the Human Genome
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Name: ANKRD13B Sequence: fasta or formatted (626aa) NCBI GI: 124517699
Description:

ankyrin repeat domain 13B

Referenced in:

Ankyrin Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         43           3
 C cysteine            1.3          8           1
 D aspartate           4.3         27           5
 E glutamate           8.5         53           4
 F phenylalanine       2.9         18           1
 G glycine             6.7         42           2
 H histidine           2.4         15           1
 I isoleucine          3.7         23           2
 K lysine              4.0         25           1
 L leucine            10.2         64           3
 M methionine          1.9         12           2
 N asparagine          3.0         19           1
 P proline             6.4         40           2
 Q glutamine           5.4         34           2
 R arginine            8.1         51           4
 S serine              7.7         48           5
 T threonine           6.9         43           2
 V valine              6.1         38           2
 W tryptophan          1.4          9           1
 Y tyrosine            2.2         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ankyrin repeat domain 13B 
ANKRD13D              0.515   ankyrin repeat domain 13 family, member D 
ANKRD13A              0.456   ankyrin repeat domain 13 
ANKRD13C              0.171   ankyrin repeat domain 13C 
ANKRD52               0.028   ankyrin repeat domain 52 
GABPB1                0.024   GA binding protein transcription factor, beta subunit...
GABPB1                0.024   GA binding protein transcription factor, beta subunit...
GABPB1                0.024   GA binding protein transcription factor, beta subuni...
GABPB1                0.024   GA binding protein transcription factor, beta subunit...
GABPB1                0.024   GA binding protein transcription factor, beta subunit...
ANKRD16               0.024   ankyrin repeat domain 16 isoform c 
ANKRD16               0.024   ankyrin repeat domain 16 isoform a 
ANKRD16               0.024   ankyrin repeat domain 16 isoform a 
LOC441869             0.023   hypothetical protein LOC441869 
TNKS                  0.023   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
ANKRD27               0.022   ankyrin repeat domain 27 (VPS9 domain) 
CASKIN1               0.021   CASK interacting protein 1 
ACBD6                 0.021   acyl-coenzyme A binding domain containing 6 
ANK2                  0.021   ankyrin 2 isoform 3 
ANK2                  0.021   ankyrin 2 isoform 2 
ANK2                  0.021   ankyrin 2 isoform 1 
TNKS2                 0.021   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
ANKRD12               0.020   ankyrin repeat domain 12 isoform 2 
ANKRD12               0.020   ankyrin repeat domain 12 isoform 1 
ANKRD44               0.020   ankyrin repeat domain 44 
CASKIN2               0.020   cask-interacting protein 2 isoform a 
TNNI3K                0.020   TNNI3 interacting kinase isoform b 
TNNI3K                0.020   TNNI3 interacting kinase isoform a 
DYSFIP1               0.020   dysferlin-interacting protein 1 
ANKRD28               0.019   ankyrin repeat domain 28 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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