Guide to the Human Genome
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Name: ANKRD13A Sequence: fasta or formatted (590aa) NCBI GI: 38683799
Description:

ankyrin repeat domain 13

Referenced in:

Ankyrin Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         35           1
 C cysteine            1.2          7           1
 D aspartate           5.8         34           2
 E glutamate          10.5         62           3
 F phenylalanine       3.9         23           1
 G glycine             4.6         27           2
 H histidine           2.5         15           1
 I isoleucine          4.4         26           2
 K lysine              4.7         28           2
 L leucine            10.5         62           2
 M methionine          2.2         13           1
 N asparagine          4.7         28           2
 P proline             3.7         22           2
 Q glutamine           4.9         29           2
 R arginine            5.9         35           2
 S serine              6.8         40           2
 T threonine           6.6         39           2
 V valine              6.8         40           2
 W tryptophan          1.9         11           1
 Y tyrosine            2.4         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ankyrin repeat domain 13 
ANKRD13B              0.485   ankyrin repeat domain 13B 
ANKRD13D              0.414   ankyrin repeat domain 13 family, member D 
ANKRD13C              0.196   ankyrin repeat domain 13C 
ANKRD50               0.025   ankyrin repeat domain 50 
ANKRD44               0.025   ankyrin repeat domain 44 
TNKS2                 0.024   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
BARD1                 0.023   BRCA1 associated RING domain 1 
ANKRD12               0.023   ankyrin repeat domain 12 isoform 2 
ANKRD12               0.023   ankyrin repeat domain 12 isoform 1 
ANK3                  0.023   ankyrin 3 isoform 1 
NRARP                 0.023   NOTCH-regulated ankyrin repeat protein 
LOC441869             0.022   hypothetical protein LOC441869 
ACBD6                 0.022   acyl-coenzyme A binding domain containing 6 
TNKS                  0.022   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
PPP1R16B              0.022   protein phosphatase 1 regulatory inhibitor subunit 1...
ANKRD28               0.022   ankyrin repeat domain 28 
RAI14                 0.022   retinoic acid induced 14 isoform d 
RAI14                 0.022   retinoic acid induced 14 isoform c 
RAI14                 0.022   retinoic acid induced 14 isoform b 
RAI14                 0.022   retinoic acid induced 14 isoform a 
RAI14                 0.022   retinoic acid induced 14 isoform a 
RAI14                 0.022   retinoic acid induced 14 isoform a 
CASKIN1               0.022   CASK interacting protein 1 
ANK2                  0.021   ankyrin 2 isoform 3 
ANK2                  0.021   ankyrin 2 isoform 2 
ANK2                  0.021   ankyrin 2 isoform 1 
TNNI3K                0.021   TNNI3 interacting kinase isoform b 
TNNI3K                0.021   TNNI3 interacting kinase isoform a 
PPP1R16A              0.021   protein phosphatase 1, regulatory (inhibitor) subuni...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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