Guide to the Human Genome
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Name: RIPK4 Sequence: fasta or formatted (784aa) NCBI GI: 41327754
Description:

ankyrin repeat domain 3

Referenced in:

Ankyrin Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         70           3
 C cysteine            1.5         12           1
 D aspartate           5.6         44           2
 E glutamate           6.8         53           2
 F phenylalanine       2.4         19           1
 G glycine             6.9         54           2
 H histidine           4.7         37           1
 I isoleucine          3.2         25           2
 K lysine              5.2         41           3
 L leucine            13.3        104           3
 M methionine          1.9         15           1
 N asparagine          2.6         20           2
 P proline             4.8         38           2
 Q glutamine           3.4         27           1
 R arginine            6.2         49           2
 S serine              7.8         61           3
 T threonine           4.6         36           2
 V valine              7.3         57           2
 W tryptophan          1.4         11           1
 Y tyrosine            1.4         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ankyrin repeat domain 3 
ANKK1                 0.255   ankyrin repeat and kinase domain containing 1 
RIPK2                 0.113   receptor-interacting serine-threonine kinase 2 
ANK3                  0.108   ankyrin 3 isoform 1 
ANK1                  0.108   ankyrin 1 isoform 9 
ANK1                  0.108   ankyrin 1 isoform 1 
ANK1                  0.108   ankyrin 1 isoform 3 
ANK1                  0.108   ankyrin 1 isoform 2 
ANK1                  0.108   ankyrin 1 isoform 4 
ANKRD28               0.102   ankyrin repeat domain 28 
ANK2                  0.100   ankyrin 2 isoform 3 
ANK2                  0.100   ankyrin 2 isoform 2 
ANK2                  0.100   ankyrin 2 isoform 1 
ANKRD44               0.095   ankyrin repeat domain 44 
ANKRD17               0.092   ankyrin repeat domain protein 17 isoform a 
ANKRD17               0.092   ankyrin repeat domain protein 17 isoform b 
ANKRD52               0.091   ankyrin repeat domain 52 
ANKRD50               0.088   ankyrin repeat domain 50 
ANKHD1                0.087   ankyrin repeat and KH domain containing 1 isoform 2 ...
ANKHD1                0.086   ankyrin repeat and KH domain containing 1 isoform 3 ...
ANKHD1                0.086   ankyrin repeat and KH domain containing 1 isoform 1 ...
ANKHD1-EIF4EBP3       0.086   ANKHD1-EIF4EBP3 protein 
RIPK3                 0.082   receptor-interacting serine-threonine kinase 3 [Homo...
DAPK1                 0.081   death-associated protein kinase 1 
INVS                  0.078   inversin isoform a 
INVS                  0.078   inversin isoform b 
ANKDD1A               0.076   ankyrin repeat and death domain containing 1A 
LOC441869             0.076   hypothetical protein LOC441869 
TNNI3K                0.073   TNNI3 interacting kinase isoform b 
TNNI3K                0.073   TNNI3 interacting kinase isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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