Guide to the Human Genome
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Name: C17orf51 Sequence: fasta or formatted (221aa) NCBI GI: 164663768
Description:

hypothetical protein LOC339263

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6         19           2
 C cysteine            4.5         10           2
 D aspartate           3.2          7           1
 E glutamate           5.0         11           3
 F phenylalanine       1.8          4           1
 G glycine             5.4         12           2
 H histidine           3.2          7           1
 I isoleucine          2.3          5           2
 K lysine              5.0         11           1
 L leucine            10.4         23           2
 M methionine          1.8          4           1
 N asparagine          0.9          2           1
 P proline            13.1         29           2
 Q glutamine           4.1          9           1
 R arginine           10.0         22           2
 S serine             12.2         27           2
 T threonine           4.1          9           1
 V valine              1.8          4           1
 W tryptophan          1.8          4           1
 Y tyrosine            0.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC339263 
LOC100292033          0.052   PREDICTED: hypothetical protein XP_002345047 
LOC100288959          0.052   PREDICTED: hypothetical protein XP_002343544 
SRRM1                 0.036   serine/arginine repetitive matrix 1 
C9orf86               0.018   Rab-like GTP-binding protein 1 isoform 1 
TCEB3B                0.018   elongin A2 
FLJ22184              0.016   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.016   PREDICTED: hypothetical protein LOC80164 
LOC100132234          0.016   PREDICTED: hypothetical protein LOC100132234 
LOC100292120          0.016   PREDICTED: hypothetical protein XP_002346164 
LOC100132234          0.016   PREDICTED: hypothetical protein LOC100132234 
LOC100291375          0.016   PREDICTED: hypothetical protein XP_002347051 
LOC100132234          0.016   PREDICTED: hypothetical protein LOC100132234 
ZNF469                0.016   zinc finger protein 469 
KLF13                 0.016   Kruppel-like factor 13 
GPR153                0.016   G protein-coupled receptor 153 
BRD4                  0.014   bromodomain-containing protein 4 isoform short 
BRD4                  0.014   bromodomain-containing protein 4 isoform long 
NDUFV3                0.014   NADH-ubiquinone oxidoreductase flavoprotein 3 isofor...
LOC100294438          0.014   PREDICTED: hypothetical protein 
CECR2                 0.014   cat eye syndrome chromosome region, candidate 2 [Ho...
SFRS16                0.014   splicing factor, arginine/serine-rich 16 
C6orf222              0.014   hypothetical protein LOC389384 
LOC100293059          0.011   PREDICTED: hypothetical protein 
LOC100290935          0.011   PREDICTED: hypothetical protein XP_002348161 
LOC100287291          0.011   PREDICTED: hypothetical protein XP_002343834 
SPEG                  0.011   SPEG complex locus 
IQSEC3                0.011   IQ motif and Sec7 domain 3 
POU6F2                0.011   POU domain, class 6, transcription factor 2 
MAST1                 0.011   microtubule associated serine/threonine kinase 1 [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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