Guide to the Human Genome
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Name: POU6F2 Sequence: fasta or formatted (691aa) NCBI GI: 157743257
Description:

POU domain, class 6, transcription factor 2

Referenced in:

POU Domain

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.4         72           7
 C cysteine            0.3          2           1
 D aspartate           1.6         11           1
 E glutamate           4.3         30           2
 F phenylalanine       1.9         13           2
 G glycine             6.1         42           2
 H histidine           2.3         16           1
 I isoleucine          4.1         28           2
 K lysine              3.0         21           2
 L leucine            10.6         73           2
 M methionine          1.7         12           1
 N asparagine          4.9         34           2
 P proline            11.0         76           3
 Q glutamine          13.7         95          10
 R arginine            2.9         20           2
 S serine             10.7         74          11
 T threonine           5.9         41           1
 V valine              3.8         26           2
 W tryptophan          0.3          2           1
 Y tyrosine            0.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   POU domain, class 6, transcription factor 2 
POU6F1                0.220   POU class 6 homeobox 1 
POU1F1                0.071   pituitary specific transcription factor 1 isoform b...
POU1F1                0.071   pituitary specific transcription factor 1 isoform alp...
POU2F1                0.068   POU class 2 homeobox 1 
POU2F3                0.064   POU transcription factor 
POU2F2                0.060   POU domain, class 2, transcription factor 2 
POU3F4                0.060   POU domain, class 3, transcription factor 4 
POU3F3                0.060   POU class 3 homeobox 3 
POU3F2                0.059   POU domain, class 3, transcription factor 2 
POU3F1                0.057   POU domain, class 3, transcription factor 1 
POU4F1                0.056   POU domain, class 4, transcription factor 1 
POU4F2                0.055   Brn3b POU domain transcription factor 
POU4F3                0.052   POU class 4 homeobox 3 
MED15                 0.049   mediator complex subunit 15 isoform a 
POU5F1                0.047   POU domain, class 5, transcription factor 1 isoform ...
POU5F1                0.046   POU domain, class 5, transcription factor 1 isoform...
MED15                 0.045   mediator complex subunit 15 isoform b 
POU5F1B               0.044   POU class 5 homeobox 1B 
MLL2                  0.038   myeloid/lymphoid or mixed-lineage leukemia 2 
ARID1A                0.038   AT rich interactive domain 1A isoform a 
ARID1A                0.038   AT rich interactive domain 1A isoform b 
BRD4                  0.037   bromodomain-containing protein 4 isoform long 
PHC2                  0.037   polyhomeotic-like 2 isoform a 
EP400                 0.037   E1A binding protein p400 
PCLO                  0.035   piccolo isoform 2 
PCLO                  0.035   piccolo isoform 1 
RFX1                  0.035   regulatory factor X1 
TOX3                  0.035   TOX high mobility group box family member 3 isoform...
TOX3                  0.035   TOX high mobility group box family member 3 isoform...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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