Guide to the Human Genome
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Name: LOC100292120 Sequence: fasta or formatted (104aa) NCBI GI: 239754950
Description:

PREDICTED: hypothetical protein XP_002346164

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8          5           1
 C cysteine            3.8          4           2
 D aspartate           2.9          3           1
 E glutamate           5.8          6           1
 F phenylalanine       3.8          4           1
 G glycine             5.8          6           1
 H histidine           5.8          6           1
 I isoleucine          1.0          1           1
 K lysine              3.8          4           1
 L leucine             9.6         10           3
 M methionine          1.0          1           1
 N asparagine          2.9          3           1
 P proline            12.5         13           3
 Q glutamine           2.9          3           1
 R arginine           15.4         16           3
 S serine              6.7          7           2
 T threonine           3.8          4           2
 V valine              4.8          5           1
 W tryptophan          1.0          1           1
 Y tyrosine            1.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346164 
LOC100291375          1.000   PREDICTED: hypothetical protein XP_002347051 
SRRM1                 0.035   serine/arginine repetitive matrix 1 
C17orf51              0.035   hypothetical protein LOC339263 
HUNK                  0.025   hormonally upregulated Neu-associated kinase 
NRG2                  0.025   neuregulin 2 isoform 2 
NRG2                  0.025   neuregulin 2 isoform 4 
NRG2                  0.025   neuregulin 2 isoform 3 
NRG2                  0.025   neuregulin 2 isoform 1 
C9orf79               0.025   chromosome 9 open reading frame 79 
CCDC120               0.020   coiled-coil domain containing 120 isoform 3 
CCDC120               0.020   coiled-coil domain containing 120 isoform 4 
CCDC120               0.020   coiled-coil domain containing 120 isoform 2 
CCDC120               0.020   coiled-coil domain containing 120 isoform 1 
USP42                 0.020   ubiquitin specific peptidase 42 
UAP1L1                0.020   UDP-N-acteylglucosamine pyrophosphorylase 1-like 1 ...
TTBK1                 0.015   tau tubulin kinase 1 
LOC100293385          0.015   PREDICTED: hypothetical protein 
LOC100290381          0.015   PREDICTED: hypothetical protein XP_002346884 
LOC100289601          0.015   PREDICTED: hypothetical protein XP_002342725 
LOC100287524          0.015   PREDICTED: hypothetical protein XP_002342307 
SMR3A                 0.015   submaxillary gland androgen regulated protein 3 homo...
GAS2L2                0.015   growth arrest-specific 2 like 2 
RBBP6                 0.010   retinoblastoma-binding protein 6 isoform 2 
RBBP6                 0.010   retinoblastoma-binding protein 6 isoform 1 
SIPA1L3               0.010   signal-induced proliferation-associated 1 like 3 [Ho...
LOC100290551          0.010   PREDICTED: hypothetical protein XP_002346417 
LOC100287437          0.010   PREDICTED: hypothetical protein XP_002342117 
C9orf71               0.010   hypothetical protein LOC169693 
IGSF5                 0.010   immunoglobulin superfamily 5 like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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