Guide to the Human Genome
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Name: LOC100132234 Sequence: fasta or formatted (202aa) NCBI GI: 169206459
Description:

PREDICTED: hypothetical protein LOC100132234

Not currently referenced in the text

Other entries for this name:
alt prot {202aa} PREDICTED: hypothetical protein LOC100132234
alt mRNA {202aa} PREDICTED: hypothetical protein LOC100132234
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.8         34           4
 C cysteine            1.5          3           1
 D aspartate           2.0          4           1
 E glutamate           3.5          7           1
 F phenylalanine       2.0          4           1
 G glycine            11.4         23           2
 H histidine           1.5          3           1
 I isoleucine          0.0          0           0
 K lysine              3.0          6           1
 L leucine             5.0         10           2
 M methionine          1.0          2           1
 N asparagine          1.0          2           1
 P proline            14.9         30           2
 Q glutamine           5.0         10           1
 R arginine           16.8         34           4
 S serine              8.4         17           1
 T threonine           2.5          5           1
 V valine              2.5          5           1
 W tryptophan          1.0          2           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein LOC100132234 
LOC100132234          1.000   PREDICTED: hypothetical protein LOC100132234 
LOC100132234          0.997   PREDICTED: hypothetical protein LOC100132234 
C10orf95              0.077   hypothetical protein LOC79946 
LOC283999             0.074   hypothetical protein LOC283999 
SALL3                 0.064   sal-like 3 
SYNJ1                 0.064   synaptojanin 1 isoform d 
LOC100131102          0.061   PREDICTED: hypothetical protein 
MUPCDH                0.061   mucin and cadherin-like isoform 1 
LOC100131102          0.059   PREDICTED: hypothetical protein 
LOC100292845          0.056   PREDICTED: hypothetical protein 
LOC729370             0.056   PREDICTED: hypothetical protein 
LOC100289230          0.056   PREDICTED: hypothetical protein XP_002342600 
SRRM2                 0.056   splicing coactivator subunit SRm300 
TAF4                  0.056   TBP-associated factor 4 
DNM1                  0.056   dynamin 1 isoform 1 
LOC100288243          0.054   PREDICTED: hypothetical protein 
LOC388279             0.054   PREDICTED: hypothetical protein 
LOC100288243          0.054   PREDICTED: hypothetical protein XP_002342233 
SAMD1                 0.054   sterile alpha motif domain containing 1 
LOC100130506          0.054   PREDICTED: hypothetical protein 
LOC100288911          0.054   PREDICTED: hypothetical protein XP_002342241 
SYN2                  0.054   synapsin II isoform IIa 
SYN2                  0.054   synapsin II isoform IIb 
UNCX                  0.054   UNC homeobox 
HCN2                  0.051   hyperpolarization activated cyclic nucleotide-gated...
LOC728597             0.051   PREDICTED: doublecortin domain-containing protein E...
LOC100286967          0.051   PREDICTED: hypothetical protein XP_002342247 
LOC728597             0.051   PREDICTED: doublecortin domain-containing protein E...
PRB2                  0.051   proline-rich protein BstNI subfamily 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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