Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100292033 Sequence: fasta or formatted (99aa) NCBI GI: 239756762
Description:

PREDICTED: hypothetical protein XP_002345047

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1          8           2
 C cysteine            3.0          3           1
 D aspartate           2.0          2           1
 E glutamate           2.0          2           1
 F phenylalanine       5.1          5           1
 G glycine            13.1         13           1
 H histidine           5.1          5           1
 I isoleucine          2.0          2           1
 K lysine              2.0          2           1
 L leucine            13.1         13           2
 M methionine          1.0          1           1
 N asparagine          2.0          2           1
 P proline            11.1         11           2
 Q glutamine           2.0          2           1
 R arginine            4.0          4           1
 S serine             11.1         11           3
 T threonine           5.1          5           1
 V valine              4.0          4           1
 W tryptophan          2.0          2           1
 Y tyrosine            2.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002345047 
LOC100288959          1.000   PREDICTED: hypothetical protein XP_002343544 
C17orf51              0.122   hypothetical protein LOC339263 
LOC100292673          0.026   PREDICTED: hypothetical protein 
LOC100291194          0.026   PREDICTED: hypothetical protein XP_002348117 
LOC100288065          0.026   PREDICTED: hypothetical protein XP_002344233 
TPSD1                 0.026   tryptase delta 1 
KIAA0802              0.021   hypothetical protein LOC23255 
KANK4                 0.016   ankyrin repeat domain 38 
LOC100191040          0.016   hypothetical protein LOC100191040 
FUT4                  0.016   fucosyltransferase 4 
LOC100130837          0.011   PREDICTED: hypothetical protein 
LOC100130837          0.011   PREDICTED: hypothetical protein 
LTB4R2                0.011   leukotriene B4 receptor 2 
LOC100293966          0.011   PREDICTED: hypothetical protein 
IGDCC4                0.011   immunoglobulin superfamily, DCC subclass, member 4 [...
TNFRSF11A             0.011   tumor necrosis factor receptor superfamily, member 11...
LOC100293652          0.011   PREDICTED: hypothetical protein 
LOC100291016          0.011   PREDICTED: hypothetical protein XP_002347804 
LOC100287809          0.011   PREDICTED: hypothetical protein XP_002343597 
SLC36A3               0.005   solute carrier family 36, member 3 isoform 1 
SLC36A3               0.005   solute carrier family 36, member 3 isoform 2 
TPSAB1                0.005   tryptase alpha/beta 1 precursor 
TPSB2                 0.005   tryptase beta 2 precursor 
C17orf68              0.005   alpha accessory factor 132 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press