Guide to the Human Genome
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Name: LMO7 Sequence: fasta or formatted (1385aa) NCBI GI: 221316634
Description:

LIM domain only 7 isoform 2

Referenced in:

Cullins and SCF Complexes
LIM Domain Proteins

Other entries for this name:
alt prot [1349aa] LIM domain only 7 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         72           2
 C cysteine            0.6          9           1
 D aspartate           6.1         84           2
 E glutamate           9.5        132           3
 F phenylalanine       2.6         36           2
 G glycine             3.5         49           1
 H histidine           0.9         12           1
 I isoleucine          3.6         50           2
 K lysine              7.0         97           3
 L leucine             6.7         93           3
 M methionine          1.7         24           1
 N asparagine          3.6         50           2
 P proline             6.8         94           3
 Q glutamine           6.4         89           2
 R arginine            7.9        109           3
 S serine             12.5        173           3
 T threonine           6.0         83           2
 V valine              5.0         69           2
 W tryptophan          1.8         25           1
 Y tyrosine            2.5         35           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   LIM domain only 7 isoform 2 
LMO7                  0.650   LIM domain only 7 isoform 1 
LIMCH1                0.052   LIM and calponin homology domains 1 isoform e [Homo...
LIMCH1                0.052   LIM and calponin homology domains 1 isoform d [Homo...
LIMCH1                0.052   LIM and calponin homology domains 1 isoform c [Homo...
LIMCH1                0.049   LIM and calponin homology domains 1 isoform b [Homo...
LIMCH1                0.049   LIM and calponin homology domains 1 isoform a [Homo...
TCHH                  0.020   trichohyalin 
LOC283685             0.019   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC727832             0.018   golgi autoantigen, golgin subfamily a-like 
LOC400352             0.018   PREDICTED: similar to Putative golgin subfamily A m...
LOC100132816          0.018   PREDICTED: similar to Putative golgin subfamily A m...
LOC645202             0.018   PREDICTED: hypothetical protein LOC645202 
LOC283685             0.018   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC100133758          0.016   PREDICTED: hypothetical protein, partial 
CALD1                 0.016   caldesmon 1 isoform 1 
LOC440243             0.015   PREDICTED: Putative golgin subfamily A member 6-lik...
LOC283767             0.015   golgi autoantigen, golgin subfamily a-like 
ZC3H13                0.015   zinc finger CCCH-type containing 13 
LOC100133220          0.015   PREDICTED: hypothetical protein 
BAT2D1                0.015   HBxAg transactivated protein 2 
SFRS12                0.015   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.015   splicing factor, arginine/serine-rich 12 isoform b [...
RBM25                 0.015   RNA binding motif protein 25 
LOC651807             0.014   PREDICTED: hypothetical protein 
LOC100286959          0.014   PREDICTED: hypothetical protein XP_002343921 
EIF3A                 0.014   eukaryotic translation initiation factor 3, subunit 1...
INCENP                0.014   inner centromere protein antigens 135/155kDa isofor...
GIGYF2                0.014   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.014   GRB10 interacting GYF protein 2 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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