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Search of human proteins with 16076875
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|16076875 tripartite motif-containing 7 isoform 4 [Homo
sapiens]
(221 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|16076875 tripartite motif-containing 7 isoform 4 [Homo sapiens] 454 e-128
gi|44680122 tripartite motif-containing 7 isoform 1 [Homo sapiens] 423 e-119
gi|15011941 tripartite motif protein TRIM4 isoform beta [Homo sa... 145 3e-35
gi|5730009 ret finger protein [Homo sapiens] 141 5e-34
gi|198442878 tripartite motif-containing 17 isoform 3 [Homo sapi... 137 6e-33
gi|68160933 tripartite motif-containing 17 isoform 1 [Homo sapiens] 137 6e-33
gi|7705825 tripartite motif-containing 17 isoform 1 [Homo sapiens] 137 6e-33
gi|21630277 tripartite motif-containing 11 [Homo sapiens] 136 1e-32
gi|14670266 tripartite motif protein TRIM4 isoform alpha [Homo s... 135 2e-32
gi|25777698 tripartite motif-containing 39 isoform 2 [Homo sapiens] 135 2e-32
gi|25777696 tripartite motif-containing 39 isoform 1 [Homo sapiens] 135 2e-32
gi|112421127 tripartite motif-containing 58 [Homo sapiens] 133 1e-31
gi|15208660 tripartite motif protein 21 [Homo sapiens] 127 7e-30
gi|18079262 tripartite motif-containing 6 isoform 2 [Homo sapiens] 126 1e-29
gi|51477692 tripartite motif-containing 6 isoform 1 [Homo sapiens] 126 1e-29
gi|51477690 tripartite motif-containing 6 and tripartite motif-c... 126 1e-29
gi|157426898 tripartite motif-containing 10 isoform 1 [Homo sapi... 121 5e-28
gi|157426896 tripartite motif-containing 10 isoform 2 [Homo sapi... 121 5e-28
gi|37622899 ring finger protein 137 [Homo sapiens] 119 3e-27
gi|14719418 tripartite motif protein TRIM5 isoform alpha [Homo s... 116 1e-26
gi|15011946 tripartite motif protein TRIM5 isoform delta [Homo s... 113 1e-25
gi|15011944 tripartite motif protein TRIM5 isoform gamma [Homo s... 113 1e-25
gi|5454014 tripartite motif-containing 38 [Homo sapiens] 113 1e-25
gi|4508005 tripartite motif-containing 26 [Homo sapiens] 112 3e-25
gi|117938316 tripartite motif-containing 22 [Homo sapiens] 111 6e-25
gi|68160935 tripartite motif-containing 17 isoform 2 [Homo sapiens] 105 4e-23
gi|145275183 tripartite motif protein 34 isoform 3 [Homo sapiens] 103 9e-23
gi|51477687 tripartite motif protein 34 isoform 1 [Homo sapiens] 103 9e-23
gi|18087807 tripartite motif protein 34 isoform 1 [Homo sapiens] 103 9e-23
gi|157743261 tripartite motif-containing 75 [Homo sapiens] 102 3e-22
>gi|16076875 tripartite motif-containing 7 isoform 4 [Homo sapiens]
Length = 221
Score = 454 bits (1169), Expect = e-128
Identities = 221/221 (100%), Positives = 221/221 (100%)
Query: 1 MAAVGPRTGPGTGAEALALAAELQGEATCSICLELFREPVSVECGHSFCRACIGRCWERP 60
MAAVGPRTGPGTGAEALALAAELQGEATCSICLELFREPVSVECGHSFCRACIGRCWERP
Sbjct: 1 MAAVGPRTGPGTGAEALALAAELQGEATCSICLELFREPVSVECGHSFCRACIGRCWERP 60
Query: 61 GAGSVGAATRAPPFPLPCPQCREPARPSQLRPNRQLAAVATLLRRFSLPAAAPGEHGSQA 120
GAGSVGAATRAPPFPLPCPQCREPARPSQLRPNRQLAAVATLLRRFSLPAAAPGEHGSQA
Sbjct: 61 GAGSVGAATRAPPFPLPCPQCREPARPSQLRPNRQLAAVATLLRRFSLPAAAPGEHGSQA 120
Query: 121 AAARAAAARCGQHGEPFKLYCQDDGRAICVVCDRAREHREHAVLPLDEAVQEAKELLESR 180
AAARAAAARCGQHGEPFKLYCQDDGRAICVVCDRAREHREHAVLPLDEAVQEAKELLESR
Sbjct: 121 AAARAAAARCGQHGEPFKLYCQDDGRAICVVCDRAREHREHAVLPLDEAVQEAKELLESR 180
Query: 181 LRVLKKELEDCEVFRSTEKKESKELLVSQAPAGPPWDITEA 221
LRVLKKELEDCEVFRSTEKKESKELLVSQAPAGPPWDITEA
Sbjct: 181 LRVLKKELEDCEVFRSTEKKESKELLVSQAPAGPPWDITEA 221
>gi|44680122 tripartite motif-containing 7 isoform 1 [Homo sapiens]
Length = 511
Score = 423 bits (1088), Expect = e-119
Identities = 207/210 (98%), Positives = 207/210 (98%)
Query: 1 MAAVGPRTGPGTGAEALALAAELQGEATCSICLELFREPVSVECGHSFCRACIGRCWERP 60
MAAVGPRTGPGTGAEALALAAELQGEATCSICLELFREPVSVECGHSFCRACIGRCWERP
Sbjct: 1 MAAVGPRTGPGTGAEALALAAELQGEATCSICLELFREPVSVECGHSFCRACIGRCWERP 60
Query: 61 GAGSVGAATRAPPFPLPCPQCREPARPSQLRPNRQLAAVATLLRRFSLPAAAPGEHGSQA 120
GAGSVGAATRAPPFPLPCPQCREPARPSQLRPNRQLAAVATLLRRFSLPAAAPGEHGSQA
Sbjct: 61 GAGSVGAATRAPPFPLPCPQCREPARPSQLRPNRQLAAVATLLRRFSLPAAAPGEHGSQA 120
Query: 121 AAARAAAARCGQHGEPFKLYCQDDGRAICVVCDRAREHREHAVLPLDEAVQEAKELLESR 180
AAARAAAARCGQHGEPFKLYCQDDGRAICVVCDRAREHREHAVLPLDEAVQEAKELLESR
Sbjct: 121 AAARAAAARCGQHGEPFKLYCQDDGRAICVVCDRAREHREHAVLPLDEAVQEAKELLESR 180
Query: 181 LRVLKKELEDCEVFRSTEKKESKELLVSQA 210
LRVLKKELEDCEVFRSTEKKESKELL A
Sbjct: 181 LRVLKKELEDCEVFRSTEKKESKELLKQMA 210
>gi|15011941 tripartite motif protein TRIM4 isoform beta [Homo
sapiens]
Length = 474
Score = 145 bits (365), Expect = 3e-35
Identities = 75/188 (39%), Positives = 109/188 (57%), Gaps = 32/188 (17%)
Query: 20 AAELQGEATCSICLELFREPVSVECGHSFCRACIGRCWERPGAGSVGAATRAPPFPLPCP 79
A ++Q E TC ICL+ F++PVS+ECGH+FCR C+ R W PG G P PCP
Sbjct: 3 AEDIQEELTCPICLDYFQDPVSIECGHNFCRGCLHRNWA-PGGG-----------PFPCP 50
Query: 80 QCREPARPSQLRPNRQLAAVATLLRRFSLPAAAPGEHGSQAAAARAAAARCGQHGEPFKL 139
+CR P+ P+ LRPN LA + +R L PG CG+H EP +L
Sbjct: 51 ECRHPSAPAALRPNWALARLTEKTQRRRLGPVPPG--------------LCGRHWEPLRL 96
Query: 140 YCQDDGRAICVVCDRAREHREHAVLPLDEAVQEAKE-LLESRLRVLKK-----ELEDCEV 193
+C+DD R +C+VC ++EH+ HA+ P+DEA + +E LL+S+ ++ K L+D EV
Sbjct: 97 FCEDDQRPVCLVCRESQEHQTHAMAPIDEAFESYREKLLKSQRNLVAKMKKVMHLQDVEV 156
Query: 194 FRSTEKKE 201
+T+ K+
Sbjct: 157 KNATQWKD 164
>gi|5730009 ret finger protein [Homo sapiens]
Length = 513
Score = 141 bits (355), Expect = 5e-34
Identities = 77/193 (39%), Positives = 112/193 (58%), Gaps = 26/193 (13%)
Query: 18 ALAAELQGEATCSICLELFREPVSVECGHSFCRACIGRCWERPGAGSVGAATRAPPFPLP 77
++A LQ E TC +CL+ F EP+ ++CGH+ C AC+ RCW G +
Sbjct: 5 SVAECLQQETTCPVCLQYFAEPMMLDCGHNICCACLARCW---GTAETNVS--------- 52
Query: 78 CPQCREPARPSQLRPNRQLAAVATLLR--RFSLPAAAPGEHGSQAAAARAAAARCGQHGE 135
CPQCRE +RPNR LA V L++ R P+ GE G C +H E
Sbjct: 53 CPQCRETFPQRHMRPNRHLANVTQLVKQLRTERPSGPGGEMGV-----------CEKHRE 101
Query: 136 PFKLYCQDDGRAICVVCDRAREHREHAVLPLDEAVQEAKELLESRLRVLKKELEDCEVFR 195
P KLYC++D ICVVCDR+REHR H+VLPL+EAV+ KE ++++L LK+ ++D + R
Sbjct: 102 PLKLYCEEDQMPICVVCDRSREHRGHSVLPLEEAVEGFKEQIQNQLDHLKR-VKDLKKRR 160
Query: 196 STEKKESKELLVS 208
+ ++++ L+S
Sbjct: 161 RAQGEQARAELLS 173
>gi|198442878 tripartite motif-containing 17 isoform 3 [Homo
sapiens]
Length = 343
Score = 137 bits (346), Expect = 6e-33
Identities = 79/190 (41%), Positives = 103/190 (54%), Gaps = 18/190 (9%)
Query: 15 EALALAAELQGEATCSICLELFREPVSVECGHSFCRACIGRCWERPGAGSVGAATRAPPF 74
EA+ LA +LQ EATCSICL+ F +PV CGH+FCRACI WE+ G G R F
Sbjct: 2 EAVELARKLQEEATCSICLDYFTDPVMTTCGHNFCRACIQLSWEK-ARGKKGRRKRKGSF 60
Query: 75 PLPCPQCREPARPSQLRPNRQLAAVATLLRRFSLPAAAPGEHGSQAAAARAAAARCGQHG 134
P CP+CRE + L PNR L VA + ++ PG C +H
Sbjct: 61 P--CPECREMSPQRNLLPNRLLTKVAEMAQQH------PGLQKQDL---------CQEHH 103
Query: 135 EPFKLYCQDDGRAICVVCDRAREHREHAVLPLDEAVQEAKELLESRLRVLKKELEDCEVF 194
EP KL+CQ D ICVVC +REHR H VLP +EAVQ K LE + L++++
Sbjct: 104 EPLKLFCQKDQSPICVVCRESREHRLHRVLPAEEAVQGYKLKLEEDMEYLREQITRTGNL 163
Query: 195 RSTEKKESKE 204
++ E++ E
Sbjct: 164 QAREEQSLAE 173
>gi|68160933 tripartite motif-containing 17 isoform 1 [Homo sapiens]
Length = 477
Score = 137 bits (346), Expect = 6e-33
Identities = 79/190 (41%), Positives = 103/190 (54%), Gaps = 18/190 (9%)
Query: 15 EALALAAELQGEATCSICLELFREPVSVECGHSFCRACIGRCWERPGAGSVGAATRAPPF 74
EA+ LA +LQ EATCSICL+ F +PV CGH+FCRACI WE+ G G R F
Sbjct: 2 EAVELARKLQEEATCSICLDYFTDPVMTTCGHNFCRACIQLSWEK-ARGKKGRRKRKGSF 60
Query: 75 PLPCPQCREPARPSQLRPNRQLAAVATLLRRFSLPAAAPGEHGSQAAAARAAAARCGQHG 134
P CP+CRE + L PNR L VA + ++ PG C +H
Sbjct: 61 P--CPECREMSPQRNLLPNRLLTKVAEMAQQH------PGLQKQDL---------CQEHH 103
Query: 135 EPFKLYCQDDGRAICVVCDRAREHREHAVLPLDEAVQEAKELLESRLRVLKKELEDCEVF 194
EP KL+CQ D ICVVC +REHR H VLP +EAVQ K LE + L++++
Sbjct: 104 EPLKLFCQKDQSPICVVCRESREHRLHRVLPAEEAVQGYKLKLEEDMEYLREQITRTGNL 163
Query: 195 RSTEKKESKE 204
++ E++ E
Sbjct: 164 QAREEQSLAE 173
>gi|7705825 tripartite motif-containing 17 isoform 1 [Homo sapiens]
Length = 477
Score = 137 bits (346), Expect = 6e-33
Identities = 79/190 (41%), Positives = 103/190 (54%), Gaps = 18/190 (9%)
Query: 15 EALALAAELQGEATCSICLELFREPVSVECGHSFCRACIGRCWERPGAGSVGAATRAPPF 74
EA+ LA +LQ EATCSICL+ F +PV CGH+FCRACI WE+ G G R F
Sbjct: 2 EAVELARKLQEEATCSICLDYFTDPVMTTCGHNFCRACIQLSWEK-ARGKKGRRKRKGSF 60
Query: 75 PLPCPQCREPARPSQLRPNRQLAAVATLLRRFSLPAAAPGEHGSQAAAARAAAARCGQHG 134
P CP+CRE + L PNR L VA + ++ PG C +H
Sbjct: 61 P--CPECREMSPQRNLLPNRLLTKVAEMAQQH------PGLQKQDL---------CQEHH 103
Query: 135 EPFKLYCQDDGRAICVVCDRAREHREHAVLPLDEAVQEAKELLESRLRVLKKELEDCEVF 194
EP KL+CQ D ICVVC +REHR H VLP +EAVQ K LE + L++++
Sbjct: 104 EPLKLFCQKDQSPICVVCRESREHRLHRVLPAEEAVQGYKLKLEEDMEYLREQITRTGNL 163
Query: 195 RSTEKKESKE 204
++ E++ E
Sbjct: 164 QAREEQSLAE 173
>gi|21630277 tripartite motif-containing 11 [Homo sapiens]
Length = 468
Score = 136 bits (343), Expect = 1e-32
Identities = 68/178 (38%), Positives = 95/178 (53%), Gaps = 25/178 (14%)
Query: 19 LAAELQGEATCSICLELFREPVSVECGHSFCRACIGRCWERPGAGSVGAATRAPPFPLPC 78
L+ LQ EATC+ICL+ F +PV +CGH+FCR CI RCW +P P C
Sbjct: 6 LSTNLQEEATCAICLDYFTDPVMTDCGHNFCRECIRRCWGQPEG------------PYAC 53
Query: 79 PQCREPARPSQLRPNRQLAAVATLLRRFSLPAAAPGEHGSQAAAARAAAARCGQHGEPFK 138
P+CRE + LRPNR LA +A + RR P+ P C H EP
Sbjct: 54 PECRELSPQRNLRPNRPLAKMAEMARRLHPPSPVP-------------QGVCPAHREPLA 100
Query: 139 LYCQDDGRAICVVCDRAREHREHAVLPLDEAVQEAKELLESRLRVLKKELEDCEVFRS 196
+C D+ R +C C+R+ EH H V PL +A ++ K LE L L+K+++D +F++
Sbjct: 101 AFCGDELRLLCAACERSGEHWAHRVRPLQDAAEDLKAKLEKSLEHLRKQMQDALLFQA 158
>gi|14670266 tripartite motif protein TRIM4 isoform alpha [Homo
sapiens]
Length = 500
Score = 135 bits (341), Expect = 2e-32
Identities = 64/152 (42%), Positives = 89/152 (58%), Gaps = 26/152 (17%)
Query: 20 AAELQGEATCSICLELFREPVSVECGHSFCRACIGRCWERPGAGSVGAATRAPPFPLPCP 79
A ++Q E TC ICL+ F++PVS+ECGH+FCR C+ R W PG G P PCP
Sbjct: 3 AEDIQEELTCPICLDYFQDPVSIECGHNFCRGCLHRNW-APGGG-----------PFPCP 50
Query: 80 QCREPARPSQLRPNRQLAAVATLLRRFSLPAAAPGEHGSQAAAARAAAARCGQHGEPFKL 139
+CR P+ P+ LRPN LA + +R L PG CG+H EP +L
Sbjct: 51 ECRHPSAPAALRPNWALARLTEKTQRRRLGPVPPG--------------LCGRHWEPLRL 96
Query: 140 YCQDDGRAICVVCDRAREHREHAVLPLDEAVQ 171
+C+DD R +C+VC ++EH+ HA+ P+DEA +
Sbjct: 97 FCEDDQRPVCLVCRESQEHQTHAMAPIDEAFE 128
>gi|25777698 tripartite motif-containing 39 isoform 2 [Homo sapiens]
Length = 488
Score = 135 bits (341), Expect = 2e-32
Identities = 75/197 (38%), Positives = 109/197 (55%), Gaps = 26/197 (13%)
Query: 11 GTGAEALALAAE-LQGEATCSICLELFREPVSVECGHSFCRACIGRCWERPGAGSVGAAT 69
G A + A A E LQ EA+CS+CLE +EPV +ECGH+FC+ACI R WE
Sbjct: 10 GASAASTAAALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERD------ 63
Query: 70 RAPPFPLPCPQCREPARPSQLRPNRQLAAVATLLRRFSLPAAAPGEHGSQAAAARAA-AA 128
PCP CR+ +R LRPNRQL ++ + ++ QA + +
Sbjct: 64 ------FPCPVCRKTSRYRSLRPNRQLGSMVEIAKQL------------QAVKRKIRDES 105
Query: 129 RCGQHGEPFKLYCQDDGRAICVVCDRAREHREHAVLPLDEAVQEAKELLESRLRVLKKEL 188
C QH E L+C +D A+C++C + HR H V+PLD+A QE KE L+ L L+++L
Sbjct: 106 LCPQHHEALSLFCYEDQEAVCLICAISHTHRAHTVVPLDDATQEYKEKLQKCLEPLEQKL 165
Query: 189 EDCEVFRSTEKKESKEL 205
++ +S+E+K+ EL
Sbjct: 166 QEITRCKSSEEKKPGEL 182
>gi|25777696 tripartite motif-containing 39 isoform 1 [Homo sapiens]
Length = 518
Score = 135 bits (341), Expect = 2e-32
Identities = 75/197 (38%), Positives = 109/197 (55%), Gaps = 26/197 (13%)
Query: 11 GTGAEALALAAE-LQGEATCSICLELFREPVSVECGHSFCRACIGRCWERPGAGSVGAAT 69
G A + A A E LQ EA+CS+CLE +EPV +ECGH+FC+ACI R WE
Sbjct: 10 GASAASTAAALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERD------ 63
Query: 70 RAPPFPLPCPQCREPARPSQLRPNRQLAAVATLLRRFSLPAAAPGEHGSQAAAARAA-AA 128
PCP CR+ +R LRPNRQL ++ + ++ QA + +
Sbjct: 64 ------FPCPVCRKTSRYRSLRPNRQLGSMVEIAKQL------------QAVKRKIRDES 105
Query: 129 RCGQHGEPFKLYCQDDGRAICVVCDRAREHREHAVLPLDEAVQEAKELLESRLRVLKKEL 188
C QH E L+C +D A+C++C + HR H V+PLD+A QE KE L+ L L+++L
Sbjct: 106 LCPQHHEALSLFCYEDQEAVCLICAISHTHRAHTVVPLDDATQEYKEKLQKCLEPLEQKL 165
Query: 189 EDCEVFRSTEKKESKEL 205
++ +S+E+K+ EL
Sbjct: 166 QEITRCKSSEEKKPGEL 182
>gi|112421127 tripartite motif-containing 58 [Homo sapiens]
Length = 486
Score = 133 bits (334), Expect = 1e-31
Identities = 70/168 (41%), Positives = 89/168 (52%), Gaps = 21/168 (12%)
Query: 23 LQGEATCSICLELFREPVSVECGHSFCRACIGRCWERPGAGSVGAATRAPPFPLPCPQCR 82
L+ +A C +CL+ +EPVSV+CGHSFC CI E+ G CPQCR
Sbjct: 10 LREDARCPVCLDFLQEPVSVDCGHSFCLRCISEFCEKSDGAQGGVYA--------CPQCR 61
Query: 83 EPARPSQLRPNRQLAAVATLLRRFSLPAAAPGEHGSQAAAARAAAARCGQHGEPFKLYCQ 142
P RPS RPNRQLA + +RR L A PG A RC +HGE +C+
Sbjct: 62 GPFRPSGFRPNRQLAGLVESVRRLGL-GAGPG------------ARRCARHGEDLSRFCE 108
Query: 143 DDGRAICVVCDRAREHREHAVLPLDEAVQEAKELLESRLRVLKKELED 190
+D A+C VCD EHR H PL EA + L+ L +++KELED
Sbjct: 109 EDEAALCWVCDAGPEHRTHRTAPLQEAAGSYQVKLQMALELMRKELED 156
>gi|15208660 tripartite motif protein 21 [Homo sapiens]
Length = 475
Score = 127 bits (319), Expect = 7e-30
Identities = 70/167 (41%), Positives = 94/167 (56%), Gaps = 25/167 (14%)
Query: 26 EATCSICLELFREPVSVECGHSFCRACIGRCWERPGAGSVGAATRAPPFPLPCPQCREPA 85
E TC ICL+ F EPVS+ECGHSFC+ CI + + G GSV CP CR+
Sbjct: 13 EVTCPICLDPFVEPVSIECGHSFCQECISQVGK--GGGSV------------CPVCRQRF 58
Query: 86 RPSQLRPNRQLAAVATLLRRFSLPAAAPGEHGSQAAAARAAAARCGQHGEPFKLYCQDDG 145
LRPNRQLA + L+ S Q A RC HGE L+C+ DG
Sbjct: 59 LLKNLRPNRQLANMVNNLKEIS-----------QEAREGTQGERCAVHGERLHLFCEKDG 107
Query: 146 RAICVVCDRAREHREHAVLPLDEAVQEAKELLESRLRVLKKELEDCE 192
+A+C VC ++R+HR+HA++PL+EA QE +E L+ L L+++ E E
Sbjct: 108 KALCWVCAQSRKHRDHAMVPLEEAAQEYQEKLQVALGELRRKQELAE 154
>gi|18079262 tripartite motif-containing 6 isoform 2 [Homo sapiens]
Length = 488
Score = 126 bits (317), Expect = 1e-29
Identities = 69/183 (37%), Positives = 98/183 (53%), Gaps = 21/183 (11%)
Query: 22 ELQGEATCSICLELFREPVSVECGHSFCRACIGRCWERPGAGSVGAATRAPPFPLPCPQC 81
+++ E TC ICLEL EP+S++CGHSFC+ACI G G + CP C
Sbjct: 8 DIREEVTCPICLELLTEPLSIDCGHSFCQACITPNGRESVIGQEGERS--------CPVC 59
Query: 82 REPARPSQLRPNRQLAAVATLLRRFSLPAAAPGEHGSQAAAARAAAARCGQHGEPFKLYC 141
+ +P LRPNR LA + LR L PG+ + A C HGE +L+C
Sbjct: 60 QTSYQPGNLRPNRHLANIVRRLREVVL---GPGK--------QLKAVLCADHGEKLQLFC 108
Query: 142 QDDGRAICVVCDRAREHREHAVLPLDEAVQEAKELLESRLRVLKKELEDCEVFRS--TEK 199
Q+DG+ IC +C+R++EHR H ++E QE +E + L+ LK E ++ E + EK
Sbjct: 109 QEDGKVICWLCERSQEHRGHHTFLVEEVAQEYQEKFQESLKKLKNEEQEAEKLTAFIREK 168
Query: 200 KES 202
K S
Sbjct: 169 KTS 171
>gi|51477692 tripartite motif-containing 6 isoform 1 [Homo sapiens]
Length = 516
Score = 126 bits (317), Expect = 1e-29
Identities = 69/183 (37%), Positives = 98/183 (53%), Gaps = 21/183 (11%)
Query: 22 ELQGEATCSICLELFREPVSVECGHSFCRACIGRCWERPGAGSVGAATRAPPFPLPCPQC 81
+++ E TC ICLEL EP+S++CGHSFC+ACI G G + CP C
Sbjct: 36 DIREEVTCPICLELLTEPLSIDCGHSFCQACITPNGRESVIGQEGERS--------CPVC 87
Query: 82 REPARPSQLRPNRQLAAVATLLRRFSLPAAAPGEHGSQAAAARAAAARCGQHGEPFKLYC 141
+ +P LRPNR LA + LR L PG+ + A C HGE +L+C
Sbjct: 88 QTSYQPGNLRPNRHLANIVRRLREVVL---GPGK--------QLKAVLCADHGEKLQLFC 136
Query: 142 QDDGRAICVVCDRAREHREHAVLPLDEAVQEAKELLESRLRVLKKELEDCEVFRS--TEK 199
Q+DG+ IC +C+R++EHR H ++E QE +E + L+ LK E ++ E + EK
Sbjct: 137 QEDGKVICWLCERSQEHRGHHTFLVEEVAQEYQEKFQESLKKLKNEEQEAEKLTAFIREK 196
Query: 200 KES 202
K S
Sbjct: 197 KTS 199
>gi|51477690 tripartite motif-containing 6 and tripartite
motif-containing 34 [Homo sapiens]
Length = 842
Score = 126 bits (317), Expect = 1e-29
Identities = 69/183 (37%), Positives = 98/183 (53%), Gaps = 21/183 (11%)
Query: 22 ELQGEATCSICLELFREPVSVECGHSFCRACIGRCWERPGAGSVGAATRAPPFPLPCPQC 81
+++ E TC ICLEL EP+S++CGHSFC+ACI G G + CP C
Sbjct: 36 DIREEVTCPICLELLTEPLSIDCGHSFCQACITPNGRESVIGQEGERS--------CPVC 87
Query: 82 REPARPSQLRPNRQLAAVATLLRRFSLPAAAPGEHGSQAAAARAAAARCGQHGEPFKLYC 141
+ +P LRPNR LA + LR L PG+ + A C HGE +L+C
Sbjct: 88 QTSYQPGNLRPNRHLANIVRRLREVVL---GPGK--------QLKAVLCADHGEKLQLFC 136
Query: 142 QDDGRAICVVCDRAREHREHAVLPLDEAVQEAKELLESRLRVLKKELEDCEVFRS--TEK 199
Q+DG+ IC +C+R++EHR H ++E QE +E + L+ LK E ++ E + EK
Sbjct: 137 QEDGKVICWLCERSQEHRGHHTFLVEEVAQEYQEKFQESLKKLKNEEQEAEKLTAFIREK 196
Query: 200 KES 202
K S
Sbjct: 197 KTS 199
Score = 109 bits (272), Expect = 2e-24
Identities = 67/201 (33%), Positives = 103/201 (51%), Gaps = 21/201 (10%)
Query: 3 AVGPRTGPGTGAEALA--LAAELQGEATCSICLELFREPVSVECGHSFCRACIGRCWERP 60
A G RT G+ A+A + +Q E TC ICLEL EP+S++CGHS CRACI +
Sbjct: 341 ASGVRTRRSQGSSAMASKILLNVQEEVTCPICLELLTEPLSLDCGHSLCRACI-TVSNKE 399
Query: 61 GAGSVGAATRAPPFPLPCPQCREPARPSQLRPNRQLAAVATLLRRFSLPAAAPGEHGSQA 120
S+G + CP C L+ N+ LA + L+ L ++G +
Sbjct: 400 AVTSMGGKS-------SCPVCGISYSFEHLQANQHLANIVERLKEVKLSP----DNGKKR 448
Query: 121 AAARAAAARCGQHGEPFKLYCQDDGRAICVVCDRAREHREHAVLPLDEAVQEAKELLESR 180
C HGE L+C++D + IC +C+R++EHR H + +E +E +E L++
Sbjct: 449 DL-------CDHHGEKLLLFCKEDRKVICWLCERSQEHRGHHTVLTEEVFKECQEKLQAV 501
Query: 181 LRVLKKELEDCEVFRSTEKKE 201
L+ LKKE E+ E + ++E
Sbjct: 502 LKRLKKEEEEAEKLEADIREE 522
>gi|157426898 tripartite motif-containing 10 isoform 1 [Homo
sapiens]
Length = 481
Score = 121 bits (303), Expect = 5e-28
Identities = 69/190 (36%), Positives = 93/190 (48%), Gaps = 20/190 (10%)
Query: 18 ALAAELQGEATCSICLELFREPVSVECGHSFCRACIGRCWERPGAGSVGAATRAPPFPLP 77
A L E C IC REPV+++CGH+FCRAC+ R E PG + T
Sbjct: 5 ASVTSLADEVNCPICQGTLREPVTIDCGHNFCRACLTRYCEIPGPDLEESPT-------- 56
Query: 78 CPQCREPARPSQLRPNRQLAAVATLLRRFSLPAAAP-GEHGSQAAAARAAAARCGQHGEP 136
CP C+EP RP RPN QLA V + R L + GE C +HGE
Sbjct: 57 CPLCKEPFRPGSFRPNWQLANVVENIERLQLVSTLGLGEEDV-----------CQEHGEK 105
Query: 137 FKLYCQDDGRAICVVCDRAREHREHAVLPLDEAVQEAKELLESRLRVLKKELEDCEVFRS 196
+C+DD +CVVC A EH H + L++A +E + L+ L+KE E+ + +S
Sbjct: 106 IYFFCEDDEMQLCVVCREAGEHATHTMRFLEDAAAPYREQIHKCLKCLRKEREEIQEIQS 165
Query: 197 TEKKESKELL 206
E K + LL
Sbjct: 166 RENKRMQVLL 175
>gi|157426896 tripartite motif-containing 10 isoform 2 [Homo
sapiens]
Length = 395
Score = 121 bits (303), Expect = 5e-28
Identities = 69/190 (36%), Positives = 93/190 (48%), Gaps = 20/190 (10%)
Query: 18 ALAAELQGEATCSICLELFREPVSVECGHSFCRACIGRCWERPGAGSVGAATRAPPFPLP 77
A L E C IC REPV+++CGH+FCRAC+ R E PG + T
Sbjct: 5 ASVTSLADEVNCPICQGTLREPVTIDCGHNFCRACLTRYCEIPGPDLEESPT-------- 56
Query: 78 CPQCREPARPSQLRPNRQLAAVATLLRRFSLPAAAP-GEHGSQAAAARAAAARCGQHGEP 136
CP C+EP RP RPN QLA V + R L + GE C +HGE
Sbjct: 57 CPLCKEPFRPGSFRPNWQLANVVENIERLQLVSTLGLGEEDV-----------CQEHGEK 105
Query: 137 FKLYCQDDGRAICVVCDRAREHREHAVLPLDEAVQEAKELLESRLRVLKKELEDCEVFRS 196
+C+DD +CVVC A EH H + L++A +E + L+ L+KE E+ + +S
Sbjct: 106 IYFFCEDDEMQLCVVCREAGEHATHTMRFLEDAAAPYREQIHKCLKCLRKEREEIQEIQS 165
Query: 197 TEKKESKELL 206
E K + LL
Sbjct: 166 RENKRMQVLL 175
>gi|37622899 ring finger protein 137 [Homo sapiens]
Length = 485
Score = 119 bits (297), Expect = 3e-27
Identities = 65/185 (35%), Positives = 90/185 (48%), Gaps = 19/185 (10%)
Query: 18 ALAAELQGEATCSICLELFREPVSVECGHSFCRACIGRCWERPGAGSVGAATRAPPFPLP 77
AL + E C IC+ REP+S++CGHSFC +C+ WE PG T
Sbjct: 5 ALVEAIVEEVACPICMTFLREPMSIDCGHSFCHSCLSGLWEIPGESQNWGYT-------- 56
Query: 78 CPQCREPARPSQLRPNRQLAAVATLLRRFSLPAAAPGEHGSQAAAARAAAARCGQHGEPF 137
CP CR P +P LRPN QLA V +R L G G C +HGE
Sbjct: 57 CPLCRAPVQPRNLRPNWQLANVVEKVRLLRLHPGM-GLKGDL----------CERHGEKL 105
Query: 138 KLYCQDDGRAICVVCDRAREHREHAVLPLDEAVQEAKELLESRLRVLKKELEDCEVFRST 197
K++C++D +C C ++ EH H+V+P+++ E K L L LKKE E+
Sbjct: 106 KMFCKEDVLIMCEACSQSPEHEAHSVVPMEDVAWEYKWELHEALEHLKKEQEEAWKLEVG 165
Query: 198 EKKES 202
E+K +
Sbjct: 166 ERKRT 170
>gi|14719418 tripartite motif protein TRIM5 isoform alpha [Homo
sapiens]
Length = 493
Score = 116 bits (291), Expect = 1e-26
Identities = 60/187 (32%), Positives = 99/187 (52%), Gaps = 23/187 (12%)
Query: 16 ALALAAELQGEATCSICLELFREPVSVECGHSFCRACIGRCWERPGAGSVGAATRAPPFP 75
A + ++ E TC ICLEL +P+S++CGHSFC+AC+ ++ ++
Sbjct: 2 ASGILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESS------- 54
Query: 76 LPCPQCREPARPSQLRPNRQLAAVATLLRRFSL-PAAAPGEHGSQAAAARAAAARCGQHG 134
CP CR +P +RPNR +A + LR L P +H C +HG
Sbjct: 55 --CPVCRISYQPENIRPNRHVANLVEKLREVKLSPEGQKVDH-------------CARHG 99
Query: 135 EPFKLYCQDDGRAICVVCDRAREHREHAVLPLDEAVQEAKELLESRLRVLKKELEDCEVF 194
E L+CQ+DG+ IC +C+R++EHR H P +E QE + L++ L +L+++ ++ E
Sbjct: 100 EKLLLFCQEDGKVICWLCERSQEHRGHHTFPTEEVAQEYQVKLQAALEMLRQKQQEAEEL 159
Query: 195 RSTEKKE 201
+ ++E
Sbjct: 160 EADIREE 166
>gi|15011946 tripartite motif protein TRIM5 isoform delta [Homo
sapiens]
Length = 326
Score = 113 bits (283), Expect = 1e-25
Identities = 59/187 (31%), Positives = 98/187 (52%), Gaps = 23/187 (12%)
Query: 16 ALALAAELQGEATCSICLELFREPVSVECGHSFCRACIGRCWERPGAGSVGAATRAPPFP 75
A + ++ E TC ICLEL +P+S++CGHSFC+AC+ ++ ++
Sbjct: 2 ASGILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESS------- 54
Query: 76 LPCPQCREPARPSQLRPNRQLAAVATLLRRFSL-PAAAPGEHGSQAAAARAAAARCGQHG 134
CP CR +P +RPNR +A + LR L P +H C +HG
Sbjct: 55 --CPVCRISYQPENIRPNRHVANIVEKLREVKLSPEGQKVDH-------------CARHG 99
Query: 135 EPFKLYCQDDGRAICVVCDRAREHREHAVLPLDEAVQEAKELLESRLRVLKKELEDCEVF 194
E L+CQ+DG+ IC +C+R++EHR H +E QE + L++ L +L+++ ++ E
Sbjct: 100 EKLLLFCQEDGKVICWLCERSQEHRGHHTFLTEEVAQEYQVKLQAALEMLRQKQQEAEEL 159
Query: 195 RSTEKKE 201
+ ++E
Sbjct: 160 EADIREE 166
>gi|15011944 tripartite motif protein TRIM5 isoform gamma [Homo
sapiens]
Length = 347
Score = 113 bits (283), Expect = 1e-25
Identities = 59/187 (31%), Positives = 98/187 (52%), Gaps = 23/187 (12%)
Query: 16 ALALAAELQGEATCSICLELFREPVSVECGHSFCRACIGRCWERPGAGSVGAATRAPPFP 75
A + ++ E TC ICLEL +P+S++CGHSFC+AC+ ++ ++
Sbjct: 2 ASGILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESS------- 54
Query: 76 LPCPQCREPARPSQLRPNRQLAAVATLLRRFSL-PAAAPGEHGSQAAAARAAAARCGQHG 134
CP CR +P +RPNR +A + LR L P +H C +HG
Sbjct: 55 --CPVCRISYQPENIRPNRHVANIVEKLREVKLSPEGQKVDH-------------CARHG 99
Query: 135 EPFKLYCQDDGRAICVVCDRAREHREHAVLPLDEAVQEAKELLESRLRVLKKELEDCEVF 194
E L+CQ+DG+ IC +C+R++EHR H +E QE + L++ L +L+++ ++ E
Sbjct: 100 EKLLLFCQEDGKVICWLCERSQEHRGHHTFLTEEVAQEYQVKLQAALEMLRQKQQEAEEL 159
Query: 195 RSTEKKE 201
+ ++E
Sbjct: 160 EADIREE 166
>gi|5454014 tripartite motif-containing 38 [Homo sapiens]
Length = 465
Score = 113 bits (282), Expect = 1e-25
Identities = 64/188 (34%), Positives = 95/188 (50%), Gaps = 29/188 (15%)
Query: 22 ELQGEATCSICLELFREPVSVECGHSFCRACIGRCWERPGAGSVGAATRAPPFPLPCPQC 81
++ EATCSICL L PVS+ CGHS+C CI ++ P + T CPQC
Sbjct: 9 KMMEEATCSICLSLMTNPVSINCGHSYCHLCITDFFKNPSQKQLRQETFC------CPQC 62
Query: 82 REPARPSQLRPNRQLAAVATLLRRFSLPAAAPGEHGSQAAAARAAAARCGQHGEPFKLYC 141
R P LRPN+QL ++ L+ + C +HGE F L+C
Sbjct: 63 RAPFHMDSLRPNKQLGSLIEALKETDQEMS------------------CEEHGEQFHLFC 104
Query: 142 QDDGRAICVVCDRAREHREHAVLPLDEAVQEAKELLESRLRVLKKELEDCEVFRSTEKKE 201
+D+G+ IC C+RA +H+ H +++ Q KE L+ + L K+LED R TE+K
Sbjct: 105 EDEGQLICWRCERAPQHKGHTTALVEDVCQGYKEKLQKAVTKL-KQLED----RCTEQKL 159
Query: 202 SKELLVSQ 209
S + +++
Sbjct: 160 STAMRITK 167
>gi|4508005 tripartite motif-containing 26 [Homo sapiens]
Length = 539
Score = 112 bits (279), Expect = 3e-25
Identities = 56/174 (32%), Positives = 94/174 (54%), Gaps = 15/174 (8%)
Query: 23 LQGEATCSICLELFREPVSVECGHSFCRACIGRCWERPGAGSVGAATRAPPFPLPCPQCR 82
L+ E TCSICL+ R+PV+++CGH FCR+C RP +GS CP C+
Sbjct: 10 LEEEVTCSICLDYLRDPVTIDCGHVFCRSCTTDV--RPISGSRPV----------CPLCK 57
Query: 83 EPARPSQLRPNRQLAAVATLLRRFSLPAAAPGEHGSQAAAARAAAARCGQHGEPFKLYCQ 142
+P + +RP QLA++ + R + G + + A C +H E YC+
Sbjct: 58 KPFKKENIRPVWQLASLVENIERLKVDK---GRQPGEVTREQQDAKLCERHREKLHYYCE 114
Query: 143 DDGRAICVVCDRAREHREHAVLPLDEAVQEAKELLESRLRVLKKELEDCEVFRS 196
DDG+ +CV+C +REHR H + +++A Q +E + + L L+++ + + F++
Sbjct: 115 DDGKLLCVMCRESREHRPHTAVLMEKAAQPHREKILNHLSTLRRDRDKIQGFQA 168
>gi|117938316 tripartite motif-containing 22 [Homo sapiens]
Length = 498
Score = 111 bits (277), Expect = 6e-25
Identities = 59/184 (32%), Positives = 100/184 (54%), Gaps = 19/184 (10%)
Query: 18 ALAAELQGEATCSICLELFREPVSVECGHSFCRACIGRCWERPGAGSVGAATRAPPFPLP 77
++ +++ E TC ICLEL EP+S++CGHSFC+ACI + S G ++
Sbjct: 4 SVKVDIEKEVTCPICLELLTEPLSLDCGHSFCQACITAKIKESVIISRGESS-------- 55
Query: 78 CPQCREPARPSQLRPNRQLAAVATLLRRFSLPAAAPGEHGSQAAAARAAAARCGQHGEPF 137
CP C+ +P LRPNR LA + ++ + +P E + C HG+
Sbjct: 56 CPVCQTRFQPGNLRPNRHLANIVERVKEVKM---SPQEGQKRDV--------CEHHGKKL 104
Query: 138 KLYCQDDGRAICVVCDRAREHREHAVLPLDEAVQEAKELLESRLRVLKKELEDCEVFRST 197
+++C++DG+ IC VC+ ++EH+ H ++E V+E +E L+ L+ L KE ++ E
Sbjct: 105 QIFCKEDGKVICWVCELSQEHQGHQTFRINEVVKECQEKLQVALQRLIKEDQEAEKLEDD 164
Query: 198 EKKE 201
++E
Sbjct: 165 IRQE 168
>gi|68160935 tripartite motif-containing 17 isoform 2 [Homo sapiens]
Length = 450
Score = 105 bits (261), Expect = 4e-23
Identities = 62/161 (38%), Positives = 82/161 (50%), Gaps = 18/161 (11%)
Query: 44 CGHSFCRACIGRCWERPGAGSVGAATRAPPFPLPCPQCREPARPSQLRPNRQLAAVATLL 103
CGH+FCRACI WE+ G G R FP CP+CRE + L PNR L VA +
Sbjct: 4 CGHNFCRACIQLSWEK-ARGKKGRRKRKGSFP--CPECREMSPQRNLLPNRLLTKVAEMA 60
Query: 104 RRFSLPAAAPGEHGSQAAAARAAAARCGQHGEPFKLYCQDDGRAICVVCDRAREHREHAV 163
++ PG C +H EP KL+CQ D ICVVC +REHR H V
Sbjct: 61 QQH------PGLQKQDL---------CQEHHEPLKLFCQKDQSPICVVCRESREHRLHRV 105
Query: 164 LPLDEAVQEAKELLESRLRVLKKELEDCEVFRSTEKKESKE 204
LP +EAVQ K LE + L++++ ++ E++ E
Sbjct: 106 LPAEEAVQGYKLKLEEDMEYLREQITRTGNLQAREEQSLAE 146
>gi|145275183 tripartite motif protein 34 isoform 3 [Homo sapiens]
Length = 270
Score = 103 bits (258), Expect = 9e-23
Identities = 61/186 (32%), Positives = 95/186 (51%), Gaps = 19/186 (10%)
Query: 16 ALALAAELQGEATCSICLELFREPVSVECGHSFCRACIGRCWERPGAGSVGAATRAPPFP 75
A + +Q E TC ICLEL EP+S++CGHS CRACI + S+G +
Sbjct: 2 ASKILLNVQEEVTCPICLELLTEPLSLDCGHSLCRACI-TVSNKEAVTSMGGKSS----- 55
Query: 76 LPCPQCREPARPSQLRPNRQLAAVATLLRRFSLPAAAPGEHGSQAAAARAAAARCGQHGE 135
CP C L+ N+ LA + L+ L ++G + C HGE
Sbjct: 56 --CPVCGISYSFEHLQANQHLANIVERLKEVKLSP----DNGKKRDL-------CDHHGE 102
Query: 136 PFKLYCQDDGRAICVVCDRAREHREHAVLPLDEAVQEAKELLESRLRVLKKELEDCEVFR 195
L+C++D + IC +C+R++EHR H + +E +E +E L++ L+ LKKE E+ E
Sbjct: 103 KLLLFCKEDRKVICWLCERSQEHRGHHTVLTEEVFKECQEKLQAVLKRLKKEEEEAEKLE 162
Query: 196 STEKKE 201
+ ++E
Sbjct: 163 ADIREE 168
>gi|51477687 tripartite motif protein 34 isoform 1 [Homo sapiens]
Length = 488
Score = 103 bits (258), Expect = 9e-23
Identities = 61/186 (32%), Positives = 95/186 (51%), Gaps = 19/186 (10%)
Query: 16 ALALAAELQGEATCSICLELFREPVSVECGHSFCRACIGRCWERPGAGSVGAATRAPPFP 75
A + +Q E TC ICLEL EP+S++CGHS CRACI + S+G +
Sbjct: 2 ASKILLNVQEEVTCPICLELLTEPLSLDCGHSLCRACI-TVSNKEAVTSMGGKSS----- 55
Query: 76 LPCPQCREPARPSQLRPNRQLAAVATLLRRFSLPAAAPGEHGSQAAAARAAAARCGQHGE 135
CP C L+ N+ LA + L+ L ++G + C HGE
Sbjct: 56 --CPVCGISYSFEHLQANQHLANIVERLKEVKLSP----DNGKKRDL-------CDHHGE 102
Query: 136 PFKLYCQDDGRAICVVCDRAREHREHAVLPLDEAVQEAKELLESRLRVLKKELEDCEVFR 195
L+C++D + IC +C+R++EHR H + +E +E +E L++ L+ LKKE E+ E
Sbjct: 103 KLLLFCKEDRKVICWLCERSQEHRGHHTVLTEEVFKECQEKLQAVLKRLKKEEEEAEKLE 162
Query: 196 STEKKE 201
+ ++E
Sbjct: 163 ADIREE 168
>gi|18087807 tripartite motif protein 34 isoform 1 [Homo sapiens]
Length = 488
Score = 103 bits (258), Expect = 9e-23
Identities = 61/186 (32%), Positives = 95/186 (51%), Gaps = 19/186 (10%)
Query: 16 ALALAAELQGEATCSICLELFREPVSVECGHSFCRACIGRCWERPGAGSVGAATRAPPFP 75
A + +Q E TC ICLEL EP+S++CGHS CRACI + S+G +
Sbjct: 2 ASKILLNVQEEVTCPICLELLTEPLSLDCGHSLCRACI-TVSNKEAVTSMGGKSS----- 55
Query: 76 LPCPQCREPARPSQLRPNRQLAAVATLLRRFSLPAAAPGEHGSQAAAARAAAARCGQHGE 135
CP C L+ N+ LA + L+ L ++G + C HGE
Sbjct: 56 --CPVCGISYSFEHLQANQHLANIVERLKEVKLSP----DNGKKRDL-------CDHHGE 102
Query: 136 PFKLYCQDDGRAICVVCDRAREHREHAVLPLDEAVQEAKELLESRLRVLKKELEDCEVFR 195
L+C++D + IC +C+R++EHR H + +E +E +E L++ L+ LKKE E+ E
Sbjct: 103 KLLLFCKEDRKVICWLCERSQEHRGHHTVLTEEVFKECQEKLQAVLKRLKKEEEEAEKLE 162
Query: 196 STEKKE 201
+ ++E
Sbjct: 163 ADIREE 168
>gi|157743261 tripartite motif-containing 75 [Homo sapiens]
Length = 468
Score = 102 bits (253), Expect = 3e-22
Identities = 57/192 (29%), Positives = 92/192 (47%), Gaps = 21/192 (10%)
Query: 14 AEALALAAELQGEATCSICLELFREPVSVECGHSFCRACIGRCWERPGAGSVGAATRAPP 73
A A AL LQ EA CSICL+ +PV++ECGH+FCR+CI + W
Sbjct: 2 AVAAALTG-LQAEAKCSICLDYLSDPVTIECGHNFCRSCIQQSW------------LDLQ 48
Query: 74 FPLPCPQCREPARPSQLRPNRQLAAVATLLRRFSLPAAAPGEHGSQAAAARAAAARCGQH 133
PCP CR + R N QL + + + + + C +H
Sbjct: 49 ELFPCPVCRHQCQEGHFRSNTQLGRMIEIAKLL--------QSTKSNKRKQEETTLCEKH 100
Query: 134 GEPFKLYCQDDGRAICVVCDRAREHREHAVLPLDEAVQEAKELLESRLRVLKKELEDCEV 193
+P ++C++D +C +C + +H+ H V P+++A ++ S ++ LKK+L D +
Sbjct: 101 NQPLSVFCKEDLMVLCPLCTQPPDHQGHHVRPIEKAAIHYRKRFCSYIQPLKKQLADLQK 160
Query: 194 FRSTEKKESKEL 205
ST+ K+ EL
Sbjct: 161 LISTQSKKPLEL 172
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.133 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,425,801
Number of Sequences: 37866
Number of extensions: 534405
Number of successful extensions: 3931
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 217
Number of HSP's that attempted gapping in prelim test: 3363
Number of HSP's gapped (non-prelim): 604
length of query: 221
length of database: 18,247,518
effective HSP length: 98
effective length of query: 123
effective length of database: 14,536,650
effective search space: 1788007950
effective search space used: 1788007950
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.