TRIM11 13489

Name: TRIM11	Sequence: fasta or formatted (468aa)		NCBI GI: 21630277
Description: tripartite motif-containing 11		Referenced in: Tripartite Motif Family
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.9 37 2 C cysteine 3.8 18 1 D aspartate 5.1 24 1 E glutamate 9.6 45 4 F phenylalanine 3.4 16 1 G glycine 6.4 30 2 H histidine 2.1 10 1 I isoleucine 2.1 10 1 K lysine 2.4 11 1 L leucine 13.2 62 2 M methionine 1.7 8 1 N asparagine 2.1 10 1 P proline 8.1 38 2 Q glutamine 5.3 25 2 R arginine 9.8 46 2 S serine 5.3 25 3 T threonine 3.4 16 1 V valine 5.1 24 2 W tryptophan 1.3 6 1 Y tyrosine 1.5 7 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 tripartite motif-containing 11 TRIM58 0.380 tripartite motif-containing 58 TRIM17 0.380 tripartite motif-containing 17 isoform 1 TRIM17 0.380 tripartite motif-containing 17 isoform 1 TRIM39 0.372 tripartite motif-containing 39 isoform 2 TRIM68 0.366 ring finger protein 137 TRIM27 0.358 ret finger protein TRIM39 0.356 tripartite motif-containing 39 isoform 1 TRIM21 0.349 tripartite motif protein 21 TRIM17 0.335 tripartite motif-containing 17 isoform 2 TRIML1 0.319 tripartite motif family-like 1 TRIM38 0.309 tripartite motif-containing 38 TRIM4 0.299 tripartite motif protein TRIM4 isoform beta TRIM4 0.284 tripartite motif protein TRIM4 isoform alpha TRIM7 0.283 tripartite motif-containing 7 isoform 1 TRIM6 0.279 tripartite motif-containing 6 isoform 2 TRIM6 0.279 tripartite motif-containing 6 isoform 1 TRIM75 0.270 tripartite motif-containing 75 TRIM60 0.267 ring finger protein 129 TRIM41 0.259 tripartite motif-containing 41 isoform 1 TRIM34 0.256 tripartite motif protein 34 isoform 1 TRIM34 0.256 tripartite motif protein 34 isoform 1 TRIM6-TRIM34 0.256 tripartite motif-containing 6 and tripartite motif-c... TRIM17 0.255 tripartite motif-containing 17 isoform 3 TRIM5 0.253 tripartite motif protein TRIM5 isoform alpha LOC642446 0.247 PREDICTED: tripartite motif-containing protein 64B-... TRIM64 0.244 tripartite motif-containing 64 TRIM43 0.241 tripartite motif-containing 43 LOC653192 0.233 PREDICTED: Tripartite motif-containing protein 43-li... LOC646754 0.232 PREDICTED: tripartite motif-containing protein 64C-... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.