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Search of human proteins with 157426860
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|157426860 transmembrane channel-like 5 isoform a [Homo
sapiens]
(1006 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|157426860 transmembrane channel-like 5 isoform a [Homo sapiens] 2075 0.0
gi|157426862 transmembrane channel-like 5 isoform b [Homo sapiens] 1852 0.0
gi|31377679 transmembrane channel-like 5 isoform c [Homo sapiens] 1327 0.0
gi|187608784 transmembrane channel-like 6 [Homo sapiens] 402 e-112
gi|187608791 transmembrane channel-like 6 [Homo sapiens] 402 e-112
gi|238550098 transmembrane channel-like 7 isoform a [Homo sapiens] 234 4e-61
gi|238550100 transmembrane channel-like 7 isoform b [Homo sapiens] 228 2e-59
gi|23943900 transmembrane channel-like 8 [Homo sapiens] 197 4e-50
gi|21389589 transmembrane channel-like 4 isoform 2 [Homo sapiens] 182 2e-45
gi|223718080 transmembrane channel-like 4 isoform 1 [Homo sapiens] 182 2e-45
gi|21071070 transmembrane channel-like 1 [Homo sapiens] 138 3e-32
gi|94536852 transmembrane cochlear-expressed protein 2 [Homo sap... 134 4e-31
gi|122937502 transmembrane channel-like 3 [Homo sapiens] 103 6e-22
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 53 2e-06
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 51 5e-06
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 50 1e-05
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 50 1e-05
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 50 1e-05
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 46 2e-04
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 46 2e-04
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 46 2e-04
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 46 2e-04
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 45 3e-04
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 45 3e-04
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 45 3e-04
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 45 3e-04
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 44 6e-04
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 44 8e-04
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 44 8e-04
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 44 8e-04
>gi|157426860 transmembrane channel-like 5 isoform a [Homo sapiens]
Length = 1006
Score = 2075 bits (5375), Expect = 0.0
Identities = 1006/1006 (100%), Positives = 1006/1006 (100%)
Query: 1 MSAYYRNNWSEEDPDYPDYSGSQNRTQGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASR 60
MSAYYRNNWSEEDPDYPDYSGSQNRTQGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASR
Sbjct: 1 MSAYYRNNWSEEDPDYPDYSGSQNRTQGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASR 60
Query: 61 TRPDYPGSLAEPNYPRSLSNPDYSGTRSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHR 120
TRPDYPGSLAEPNYPRSLSNPDYSGTRSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHR
Sbjct: 61 TRPDYPGSLAEPNYPRSLSNPDYSGTRSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHR 120
Query: 121 ASSRQPDYPGSQRNPDFAGSSSSGNYAGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLN 180
ASSRQPDYPGSQRNPDFAGSSSSGNYAGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLN
Sbjct: 121 ASSRQPDYPGSQRNPDFAGSSSSGNYAGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLN 180
Query: 181 HPGSRKNLEHTSFRINPYADSLGKPDYPGADIQPNSPPFFGEPDYPSAEDNQNLPSTWRE 240
HPGSRKNLEHTSFRINPYADSLGKPDYPGADIQPNSPPFFGEPDYPSAEDNQNLPSTWRE
Sbjct: 181 HPGSRKNLEHTSFRINPYADSLGKPDYPGADIQPNSPPFFGEPDYPSAEDNQNLPSTWRE 240
Query: 241 PDYSDAENGHDYGSSETPKMTRGVLSRTSSIQPSFRHRSDDPVGSLWGENDYPEGIEMAS 300
PDYSDAENGHDYGSSETPKMTRGVLSRTSSIQPSFRHRSDDPVGSLWGENDYPEGIEMAS
Sbjct: 241 PDYSDAENGHDYGSSETPKMTRGVLSRTSSIQPSFRHRSDDPVGSLWGENDYPEGIEMAS 300
Query: 301 MEMANSYGHSLPGAPGSGYVNPAYVGESGPVHAYGNPPLSECDWHKSPQGQKLIASLIPM 360
MEMANSYGHSLPGAPGSGYVNPAYVGESGPVHAYGNPPLSECDWHKSPQGQKLIASLIPM
Sbjct: 301 MEMANSYGHSLPGAPGSGYVNPAYVGESGPVHAYGNPPLSECDWHKSPQGQKLIASLIPM 360
Query: 361 TSRDRIKAIRNQPRTMEEKRNLRKIVDKEKSKQTHRILQLNCCIQCLNSISRAYRRSKNS 420
TSRDRIKAIRNQPRTMEEKRNLRKIVDKEKSKQTHRILQLNCCIQCLNSISRAYRRSKNS
Sbjct: 361 TSRDRIKAIRNQPRTMEEKRNLRKIVDKEKSKQTHRILQLNCCIQCLNSISRAYRRSKNS 420
Query: 421 LSEILNSISLWQKTLKIIGGKFGTSVLSYFNFLRWLLKFNIFSFILNFSFIIIPQFTVAK 480
LSEILNSISLWQKTLKIIGGKFGTSVLSYFNFLRWLLKFNIFSFILNFSFIIIPQFTVAK
Sbjct: 421 LSEILNSISLWQKTLKIIGGKFGTSVLSYFNFLRWLLKFNIFSFILNFSFIIIPQFTVAK 480
Query: 481 KNTLQFTGLEFFTGVGYFRDTVMYYGFYTNSTIQHGNSGASYNMQLAYIFTIGACLTTCF 540
KNTLQFTGLEFFTGVGYFRDTVMYYGFYTNSTIQHGNSGASYNMQLAYIFTIGACLTTCF
Sbjct: 481 KNTLQFTGLEFFTGVGYFRDTVMYYGFYTNSTIQHGNSGASYNMQLAYIFTIGACLTTCF 540
Query: 541 FSLLFSMAKYFRNNFINPHIYSGGITKLIFCWDFTVTHEKAVKLKQKNLSTEIRENLSEL 600
FSLLFSMAKYFRNNFINPHIYSGGITKLIFCWDFTVTHEKAVKLKQKNLSTEIRENLSEL
Sbjct: 541 FSLLFSMAKYFRNNFINPHIYSGGITKLIFCWDFTVTHEKAVKLKQKNLSTEIRENLSEL 600
Query: 601 RQENSKLTFNQLLTRFSAYMVAWVVSTGVAIACCAAVYYLAEYNLEFLKTHSNPGAVLLL 660
RQENSKLTFNQLLTRFSAYMVAWVVSTGVAIACCAAVYYLAEYNLEFLKTHSNPGAVLLL
Sbjct: 601 RQENSKLTFNQLLTRFSAYMVAWVVSTGVAIACCAAVYYLAEYNLEFLKTHSNPGAVLLL 660
Query: 661 PFVVSCINLAVPCIYSMFRLVERYEMPRHEVYVLLIRNIFLKISIIGILCYYWLNTVALS 720
PFVVSCINLAVPCIYSMFRLVERYEMPRHEVYVLLIRNIFLKISIIGILCYYWLNTVALS
Sbjct: 661 PFVVSCINLAVPCIYSMFRLVERYEMPRHEVYVLLIRNIFLKISIIGILCYYWLNTVALS 720
Query: 721 GEECWETLIGQDIYRLLLMDFVFSLVNSFLGEFLRRIIGMQLITSLGLQEFDIARNVLEL 780
GEECWETLIGQDIYRLLLMDFVFSLVNSFLGEFLRRIIGMQLITSLGLQEFDIARNVLEL
Sbjct: 721 GEECWETLIGQDIYRLLLMDFVFSLVNSFLGEFLRRIIGMQLITSLGLQEFDIARNVLEL 780
Query: 781 IYAQTLVWIGIFFCPLLPFIQMIMLFIMFYSKNISLMMNFQPPSKAWRASQMMTFFIFLL 840
IYAQTLVWIGIFFCPLLPFIQMIMLFIMFYSKNISLMMNFQPPSKAWRASQMMTFFIFLL
Sbjct: 781 IYAQTLVWIGIFFCPLLPFIQMIMLFIMFYSKNISLMMNFQPPSKAWRASQMMTFFIFLL 840
Query: 841 FFPSFTGVLCTLAITIWRLKPSADCGPFRGLPLFIHSIYSWIDTLSTRPGYLWVVWIYRN 900
FFPSFTGVLCTLAITIWRLKPSADCGPFRGLPLFIHSIYSWIDTLSTRPGYLWVVWIYRN
Sbjct: 841 FFPSFTGVLCTLAITIWRLKPSADCGPFRGLPLFIHSIYSWIDTLSTRPGYLWVVWIYRN 900
Query: 901 LIGSVHFFFILTLIVLIITYLYWQITEGRKIMIRLLHEQIINEGKDKMFLIEKLIKLQDM 960
LIGSVHFFFILTLIVLIITYLYWQITEGRKIMIRLLHEQIINEGKDKMFLIEKLIKLQDM
Sbjct: 901 LIGSVHFFFILTLIVLIITYLYWQITEGRKIMIRLLHEQIINEGKDKMFLIEKLIKLQDM 960
Query: 961 EKKANPSSLVLERREVEQQGFLHLGEHDGSLDLRSRRSVQEGNPRA 1006
EKKANPSSLVLERREVEQQGFLHLGEHDGSLDLRSRRSVQEGNPRA
Sbjct: 961 EKKANPSSLVLERREVEQQGFLHLGEHDGSLDLRSRRSVQEGNPRA 1006
>gi|157426862 transmembrane channel-like 5 isoform b [Homo sapiens]
Length = 948
Score = 1852 bits (4796), Expect = 0.0
Identities = 920/1006 (91%), Positives = 929/1006 (92%), Gaps = 58/1006 (5%)
Query: 1 MSAYYRNNWSEEDPDYPDYSGSQNRTQGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASR 60
MSAYYRNNWSEEDPDYPDYSGSQNRTQGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASR
Sbjct: 1 MSAYYRNNWSEEDPDYPDYSGSQNRTQGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASR 60
Query: 61 TRPDYPGSLAEPNYPRSLSNPDYSGTRSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHR 120
TRPDYPGSLAEPNYPRSLSNPDYSGTRSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHR
Sbjct: 61 TRPDYPGSLAEPNYPRSLSNPDYSGTRSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHR 120
Query: 121 ASSRQPDYPGSQRNPDFAGSSSSGNYAGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLN 180
ASSRQPDYPGSQRNPDFAGSSSSGNYAGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLN
Sbjct: 121 ASSRQPDYPGSQRNPDFAGSSSSGNYAGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLN 180
Query: 181 HPGSRKNLEHTSFRINPYADSLGKPDYPGADIQPNSPPFFGEPDYPSAEDNQNLPSTWRE 240
HPGSRKNLEHTSFRINPYADSLGKPDYPGADIQPNSPPFFGEPDYPSAEDNQNLPSTWRE
Sbjct: 181 HPGSRKNLEHTSFRINPYADSLGKPDYPGADIQPNSPPFFGEPDYPSAEDNQNLPSTWRE 240
Query: 241 PDYSDAENGHDYGSSETPKMTRGVLSRTSSIQPSFRHRSDDPVGSLWGENDYPEGIEMAS 300
PDYSDAENGHDYGSSETPKMTRGVLSRTSSIQPSFRHRSDDPVGSLWGENDYPEGIEMAS
Sbjct: 241 PDYSDAENGHDYGSSETPKMTRGVLSRTSSIQPSFRHRSDDPVGSLWGENDYPEGIEMAS 300
Query: 301 MEMANSYGHSLPGAPGSGYVNPAYVGESGPVHAYGNPPLSECDWHKSPQGQKLIASLIPM 360
MEMANSYGHSLPGAPGSGYVNPAYVGESGPVHAYGNPPLSECDWHKSPQGQKLIASLIPM
Sbjct: 301 MEMANSYGHSLPGAPGSGYVNPAYVGESGPVHAYGNPPLSECDWHKSPQGQKLIASLIPM 360
Query: 361 TSRDRIKAIRNQPRTMEEKRNLRKIVDKEKSKQTHRILQLNCCIQCLNSISRAYRRSKNS 420
TSRDRIKAIRNQPRTMEEKRNLRKIVDKEKSKQTHRILQLNCCIQCLNSISRAYRRSKNS
Sbjct: 361 TSRDRIKAIRNQPRTMEEKRNLRKIVDKEKSKQTHRILQLNCCIQCLNSISRAYRRSKNS 420
Query: 421 LSEILNSISLWQKTLKIIGGKFGTSVLSYFNFLRWLLKFNIFSFILNFSFIIIPQFTVAK 480
LSEILNSISLWQKTLKIIGGKFGTSVLSYFNFLRWLLKFNIFSFILNFSFIIIPQFTVAK
Sbjct: 421 LSEILNSISLWQKTLKIIGGKFGTSVLSYFNFLRWLLKFNIFSFILNFSFIIIPQFTVAK 480
Query: 481 KNTLQFTGLEFFTGVGYFRDTVMYYGFYTNSTIQHGNSGASYNMQLAYIFTIGACLTTCF 540
KNTLQFTGLEFFTGVGYFRDTVMYYGFYTNSTIQHGNSGASYNMQLAYIFTIGACLTTCF
Sbjct: 481 KNTLQFTGLEFFTGVGYFRDTVMYYGFYTNSTIQHGNSGASYNMQLAYIFTIGACLTTCF 540
Query: 541 FSLLFSMAKYFRNNFINPHIYSGGITKLIFCWDFTVTHEKAVKLKQKNLSTEIRENLSEL 600
FSLLFSMAKYFRNNFINPHIYSGGITKLIFCWDFTVTHEKAVKLKQKNLSTEIRENLSEL
Sbjct: 541 FSLLFSMAKYFRNNFINPHIYSGGITKLIFCWDFTVTHEKAVKLKQKNLSTEIRENLSEL 600
Query: 601 RQENSKLTFNQLLTRFSAYMVAWVVSTGVAIACCAAVYYLAEYNLEFLKTHSNPGAVLLL 660
RQENSKLTFNQLLTRFSAYMVAWVVSTGVAIACCAAVYYLAEYNLEFLKTHSNPGAVLLL
Sbjct: 601 RQENSKLTFNQLLTRFSAYMVAWVVSTGVAIACCAAVYYLAEYNLEFLKTHSNPGAVLLL 660
Query: 661 PFVVSCINLAVPCIYSMFRLVERYEMPRHEVYVLLIRNIFLKISIIGILCYYWLNTVALS 720
PFVVSCINLAVPCIYSMFRLVERYEMPRHEVYVLLIRNIFLKISIIGILCYYWLNTVALS
Sbjct: 661 PFVVSCINLAVPCIYSMFRLVERYEMPRHEVYVLLIRNIFLKISIIGILCYYWLNTVALS 720
Query: 721 GEECWETLIGQDIYRLLLMDFVFSLVNSFLGEFLRRIIGMQLITSLGLQEFDIARNVLEL 780
GEECWETLIGQDIYRLLLMDFVFSLVNSFLGEFLRRIIGMQLITSLGLQEFDIARNVLEL
Sbjct: 721 GEECWETLIGQDIYRLLLMDFVFSLVNSFLGEFLRRIIGMQLITSLGLQEFDIARNVLEL 780
Query: 781 IYAQTLVWIGIFFCPLLPFIQMIMLFIMFYSKNISLMMNFQPPSKAWRASQMMTFFIFLL 840
IYAQTLVWIGIFFCPLLPFIQMIMLFIMFYSKNISLMMNFQPPSKAWRASQMMTFFIFLL
Sbjct: 781 IYAQTLVWIGIFFCPLLPFIQMIMLFIMFYSKNISLMMNFQPPSKAWRASQMMTFFIFLL 840
Query: 841 FFPSFTGVLCTLAITIWRLKPSADCGPFRGLPLFIHSIYSWIDTLSTRPGYLWVVWIYRN 900
FFPSFTGVLCTLAITIWR+ I +Y W + R
Sbjct: 841 FFPSFTGVLCTLAITIWRI---------------ITYLY-------------WQITEGRK 872
Query: 901 LIGSVHFFFILTLIVLIITYLYWQITEGRKIMIRLLHEQIINEGKDKMFLIEKLIKLQDM 960
++I L+ QI K + L+ + I KLQDM
Sbjct: 873 ---------------IMIRLLHEQIINEGKDKMFLIEKLI---------------KLQDM 902
Query: 961 EKKANPSSLVLERREVEQQGFLHLGEHDGSLDLRSRRSVQEGNPRA 1006
EKKANPSSLVLERREVEQQGFLHLGEHDGSLDLRSRRSVQEGNPRA
Sbjct: 903 EKKANPSSLVLERREVEQQGFLHLGEHDGSLDLRSRRSVQEGNPRA 948
>gi|31377679 transmembrane channel-like 5 isoform c [Homo sapiens]
Length = 760
Score = 1327 bits (3434), Expect = 0.0
Identities = 659/662 (99%), Positives = 661/662 (99%)
Query: 345 HKSPQGQKLIASLIPMTSRDRIKAIRNQPRTMEEKRNLRKIVDKEKSKQTHRILQLNCCI 404
H++ QGQKLIASLIPMTSRDRIKAIRNQPRTMEEKRNLRKIVDKEKSKQTHRILQLNCCI
Sbjct: 99 HETVQGQKLIASLIPMTSRDRIKAIRNQPRTMEEKRNLRKIVDKEKSKQTHRILQLNCCI 158
Query: 405 QCLNSISRAYRRSKNSLSEILNSISLWQKTLKIIGGKFGTSVLSYFNFLRWLLKFNIFSF 464
QCLNSISRAYRRSKNSLSEILNSISLWQKTLKIIGGKFGTSVLSYFNFLRWLLKFNIFSF
Sbjct: 159 QCLNSISRAYRRSKNSLSEILNSISLWQKTLKIIGGKFGTSVLSYFNFLRWLLKFNIFSF 218
Query: 465 ILNFSFIIIPQFTVAKKNTLQFTGLEFFTGVGYFRDTVMYYGFYTNSTIQHGNSGASYNM 524
ILNFSFIIIPQFTVAKKNTLQFTGLEFFTGVGYFRDTVMYYGFYTNSTIQHGNSGASYNM
Sbjct: 219 ILNFSFIIIPQFTVAKKNTLQFTGLEFFTGVGYFRDTVMYYGFYTNSTIQHGNSGASYNM 278
Query: 525 QLAYIFTIGACLTTCFFSLLFSMAKYFRNNFINPHIYSGGITKLIFCWDFTVTHEKAVKL 584
QLAYIFTIGACLTTCFFSLLFSMAKYFRNNFINPHIYSGGITKLIFCWDFTVTHEKAVKL
Sbjct: 279 QLAYIFTIGACLTTCFFSLLFSMAKYFRNNFINPHIYSGGITKLIFCWDFTVTHEKAVKL 338
Query: 585 KQKNLSTEIRENLSELRQENSKLTFNQLLTRFSAYMVAWVVSTGVAIACCAAVYYLAEYN 644
KQKNLSTEIRENLSELRQENSKLTFNQLLTRFSAYMVAWVVSTGVAIACCAAVYYLAEYN
Sbjct: 339 KQKNLSTEIRENLSELRQENSKLTFNQLLTRFSAYMVAWVVSTGVAIACCAAVYYLAEYN 398
Query: 645 LEFLKTHSNPGAVLLLPFVVSCINLAVPCIYSMFRLVERYEMPRHEVYVLLIRNIFLKIS 704
LEFLKTHSNPGAVLLLPFVVSCINLAVPCIYSMFRLVERYEMPRHEVYVLLIRNIFLKIS
Sbjct: 399 LEFLKTHSNPGAVLLLPFVVSCINLAVPCIYSMFRLVERYEMPRHEVYVLLIRNIFLKIS 458
Query: 705 IIGILCYYWLNTVALSGEECWETLIGQDIYRLLLMDFVFSLVNSFLGEFLRRIIGMQLIT 764
IIGILCYYWLNTVALSGEECWETLIGQDIYRLLLMDFVFSLVNSFLGEFLRRIIGMQLIT
Sbjct: 459 IIGILCYYWLNTVALSGEECWETLIGQDIYRLLLMDFVFSLVNSFLGEFLRRIIGMQLIT 518
Query: 765 SLGLQEFDIARNVLELIYAQTLVWIGIFFCPLLPFIQMIMLFIMFYSKNISLMMNFQPPS 824
SLGLQEFDIARNVLELIYAQTLVWIGIFFCPLLPFIQMIMLFIMFYSKNISLMMNFQPPS
Sbjct: 519 SLGLQEFDIARNVLELIYAQTLVWIGIFFCPLLPFIQMIMLFIMFYSKNISLMMNFQPPS 578
Query: 825 KAWRASQMMTFFIFLLFFPSFTGVLCTLAITIWRLKPSADCGPFRGLPLFIHSIYSWIDT 884
KAWRASQMMTFFIFLLFFPSFTGVLCTLAITIWRLKPSADCGPFRGLPLFIHSIYSWIDT
Sbjct: 579 KAWRASQMMTFFIFLLFFPSFTGVLCTLAITIWRLKPSADCGPFRGLPLFIHSIYSWIDT 638
Query: 885 LSTRPGYLWVVWIYRNLIGSVHFFFILTLIVLIITYLYWQITEGRKIMIRLLHEQIINEG 944
LSTRPGYLWVVWIYRNLIGSVHFFFILTLIVLIITYLYWQITEGRKIMIRLLHEQIINEG
Sbjct: 639 LSTRPGYLWVVWIYRNLIGSVHFFFILTLIVLIITYLYWQITEGRKIMIRLLHEQIINEG 698
Query: 945 KDKMFLIEKLIKLQDMEKKANPSSLVLERREVEQQGFLHLGEHDGSLDLRSRRSVQEGNP 1004
KDKMFLIEKLIKLQDMEKKANPSSLVLERREVEQQGFLHLGEHDGSLDLRSRRSVQEGNP
Sbjct: 699 KDKMFLIEKLIKLQDMEKKANPSSLVLERREVEQQGFLHLGEHDGSLDLRSRRSVQEGNP 758
Query: 1005 RA 1006
RA
Sbjct: 759 RA 760
>gi|187608784 transmembrane channel-like 6 [Homo sapiens]
Length = 805
Score = 402 bits (1033), Expect = e-112
Identities = 233/637 (36%), Positives = 355/637 (55%), Gaps = 23/637 (3%)
Query: 353 LIASLIPMTSRDRIKAIRNQPRTMEEKRNLRKIVDKEKSK---QTHRILQLNCCIQCLNS 409
L+ L + R +R P ++ EKR+LR+ + K Q +CC + +
Sbjct: 149 LVKELQSLAVAQRDHMLRGMPLSLAEKRSLREKSRTPRGKWRGQPGSGGVCSCCGRLRYA 208
Query: 410 ISRAYRRSKNSLSEILNSISLWQKTLKIIGGKFGTSVLSYFNFLRWLLKFNIFSFILNFS 469
A +L L ++ W+ LK IGG+FG+SVLSYF FL+ LL FN +L +
Sbjct: 209 CVLALHSLGLALLSALQALMPWRYALKRIGGQFGSSVLSYFLFLKTLLAFNALLLLLLVA 268
Query: 470 FIIIPQ--FTVAKKNTLQF-TGLEFFTGVGYFRDTVMYYGFYTNSTIQH-------GNS- 518
FI+ PQ F A TGLE TG G F TVMYYG Y+N+T+ G+
Sbjct: 269 FIMGPQVAFPPALPGPAPVCTGLELLTGAGCFTHTVMYYGHYSNATLNQPCGSPLDGSQC 328
Query: 519 -----GASYNMQLAYIFTIGACLTTCFFSLLFSMAKYFRNNFINPHIYSGGITKLIFC-W 572
G YNM LAY+ T+G +L++SMA F ++ SG +FC W
Sbjct: 329 TPRVGGLPYNMPLAYLSTVGVSFFITCITLVYSMAHSFGESY-RVGSTSGIHAITVFCSW 387
Query: 573 DFTVTHEKAVKLKQKNLSTEIRENLSELRQENSKLTFNQLLTRFSAYMVAWVVSTGVAIA 632
D+ VT ++A +L+Q N+ T ++E L+E + +S + L + + + W++ G A+
Sbjct: 388 DYKVTQKRASRLQQDNIRTRLKELLAEWQLRHSPRSVCGRLRQAAVLGLVWLLCLGTALG 447
Query: 633 CCAAVYYLAEYNLEFLKTHSNPGAVLLLPFVVSCINLAVPCIYSMFRLVERYEMPRHEVY 692
C AV+ +E+ ++ + +L+LP VV +NL P + + +E ++ P EVY
Sbjct: 448 CAVAVHVFSEFMIQSPEAAGQEAVLLVLPLVVGLLNLGAPYLCRVLAALEPHDSPVLEVY 507
Query: 693 VLLIRNIFLKISIIGILCYYWLNT-VALSGEECWETLIGQDIYRLLLMDFVFSLVNSFLG 751
V + RN+ LK++I+G LCY+WL V + +CWE +GQ++YR L+MDFV L+++ G
Sbjct: 508 VAICRNLILKLAILGTLCYHWLGRRVGVLQGQCWEDFVGQELYRFLVMDFVLMLLDTLFG 567
Query: 752 EFLRRIIGMQLITSLGLQEFDIARNVLELIYAQTLVWIGIFFCPLLPFIQMIMLFIMFYS 811
E + RII + + EFDIARNVLELIY QTL W+G+ F PLLP +Q+I L ++FY
Sbjct: 568 ELVWRIISEKKLKRRRKPEFDIARNVLELIYGQTLTWLGVLFSPLLPAVQIIKLLLVFYV 627
Query: 812 KNISLMMNFQPPSKAWRASQMMTFFIFLLFFPSFTGVLCTLAITIWRLKPSADCGPFRGL 871
K SL+ N Q P + W AS M T F+ LL FP+F G L +W++KPS+ CGPFR L
Sbjct: 628 KKTSLLANCQAPRRPWLASHMSTVFLTLLCFPAFLGAAVFLCYAVWQVKPSSTCGPFRTL 687
Query: 872 PLFIHSIYSWIDTL-STRPGYLWVVWIYRNLIGSVHFFFILTLIVLIITYLYWQITEGRK 930
+ W+ L + P W+ W++R L+ + F F+++ ++L + YL Q+ G++
Sbjct: 688 DTMYEAGRVWVRHLEAAGPRVSWLPWVHRYLMENTFFVFLVSALLLAVIYLNIQVVRGQR 747
Query: 931 IMIRLLHEQIINEGKDKMFLIEKLIKLQDMEKKANPS 967
+I LL EQI NEG+DK+FLI KL + + +++ S
Sbjct: 748 KVICLLKEQISNEGEDKIFLINKLHSIYERKEREERS 784
>gi|187608791 transmembrane channel-like 6 [Homo sapiens]
Length = 805
Score = 402 bits (1033), Expect = e-112
Identities = 233/637 (36%), Positives = 355/637 (55%), Gaps = 23/637 (3%)
Query: 353 LIASLIPMTSRDRIKAIRNQPRTMEEKRNLRKIVDKEKSK---QTHRILQLNCCIQCLNS 409
L+ L + R +R P ++ EKR+LR+ + K Q +CC + +
Sbjct: 149 LVKELQSLAVAQRDHMLRGMPLSLAEKRSLREKSRTPRGKWRGQPGSGGVCSCCGRLRYA 208
Query: 410 ISRAYRRSKNSLSEILNSISLWQKTLKIIGGKFGTSVLSYFNFLRWLLKFNIFSFILNFS 469
A +L L ++ W+ LK IGG+FG+SVLSYF FL+ LL FN +L +
Sbjct: 209 CVLALHSLGLALLSALQALMPWRYALKRIGGQFGSSVLSYFLFLKTLLAFNALLLLLLVA 268
Query: 470 FIIIPQ--FTVAKKNTLQF-TGLEFFTGVGYFRDTVMYYGFYTNSTIQH-------GNS- 518
FI+ PQ F A TGLE TG G F TVMYYG Y+N+T+ G+
Sbjct: 269 FIMGPQVAFPPALPGPAPVCTGLELLTGAGCFTHTVMYYGHYSNATLNQPCGSPLDGSQC 328
Query: 519 -----GASYNMQLAYIFTIGACLTTCFFSLLFSMAKYFRNNFINPHIYSGGITKLIFC-W 572
G YNM LAY+ T+G +L++SMA F ++ SG +FC W
Sbjct: 329 TPRVGGLPYNMPLAYLSTVGVSFFITCITLVYSMAHSFGESY-RVGSTSGIHAITVFCSW 387
Query: 573 DFTVTHEKAVKLKQKNLSTEIRENLSELRQENSKLTFNQLLTRFSAYMVAWVVSTGVAIA 632
D+ VT ++A +L+Q N+ T ++E L+E + +S + L + + + W++ G A+
Sbjct: 388 DYKVTQKRASRLQQDNIRTRLKELLAEWQLRHSPRSVCGRLRQAAVLGLVWLLCLGTALG 447
Query: 633 CCAAVYYLAEYNLEFLKTHSNPGAVLLLPFVVSCINLAVPCIYSMFRLVERYEMPRHEVY 692
C AV+ +E+ ++ + +L+LP VV +NL P + + +E ++ P EVY
Sbjct: 448 CAVAVHVFSEFMIQSPEAAGQEAVLLVLPLVVGLLNLGAPYLCRVLAALEPHDSPVLEVY 507
Query: 693 VLLIRNIFLKISIIGILCYYWLNT-VALSGEECWETLIGQDIYRLLLMDFVFSLVNSFLG 751
V + RN+ LK++I+G LCY+WL V + +CWE +GQ++YR L+MDFV L+++ G
Sbjct: 508 VAICRNLILKLAILGTLCYHWLGRRVGVLQGQCWEDFVGQELYRFLVMDFVLMLLDTLFG 567
Query: 752 EFLRRIIGMQLITSLGLQEFDIARNVLELIYAQTLVWIGIFFCPLLPFIQMIMLFIMFYS 811
E + RII + + EFDIARNVLELIY QTL W+G+ F PLLP +Q+I L ++FY
Sbjct: 568 ELVWRIISEKKLKRRRKPEFDIARNVLELIYGQTLTWLGVLFSPLLPAVQIIKLLLVFYV 627
Query: 812 KNISLMMNFQPPSKAWRASQMMTFFIFLLFFPSFTGVLCTLAITIWRLKPSADCGPFRGL 871
K SL+ N Q P + W AS M T F+ LL FP+F G L +W++KPS+ CGPFR L
Sbjct: 628 KKTSLLANCQAPRRPWLASHMSTVFLTLLCFPAFLGAAVFLCYAVWQVKPSSTCGPFRTL 687
Query: 872 PLFIHSIYSWIDTL-STRPGYLWVVWIYRNLIGSVHFFFILTLIVLIITYLYWQITEGRK 930
+ W+ L + P W+ W++R L+ + F F+++ ++L + YL Q+ G++
Sbjct: 688 DTMYEAGRVWVRHLEAAGPRVSWLPWVHRYLMENTFFVFLVSALLLAVIYLNIQVVRGQR 747
Query: 931 IMIRLLHEQIINEGKDKMFLIEKLIKLQDMEKKANPS 967
+I LL EQI NEG+DK+FLI KL + + +++ S
Sbjct: 748 KVICLLKEQISNEGEDKIFLINKLHSIYERKEREERS 784
>gi|238550098 transmembrane channel-like 7 isoform a [Homo sapiens]
Length = 723
Score = 234 bits (596), Expect = 4e-61
Identities = 177/647 (27%), Positives = 308/647 (47%), Gaps = 73/647 (11%)
Query: 368 AIRNQPRTMEEKRNLRKIVDKEKSKQTHRILQLNCCIQCLNSISRAYRRSKNSLSEILNS 427
++RN + EKR LR I Q ++ L+ Q S++++R E+
Sbjct: 89 SLRNYALNISEKRRLRDI-------QETQMKYLSEWDQWKRYSSKSWKRFLEKAREMTTH 141
Query: 428 ISLWQKTLKIIGGKFGTSVLSYFNFLRWLLKFNIFSFIL-----------------NFSF 470
+ LW++ ++ I GKFGT + SYF+FLR+L+ N+ F++ N SF
Sbjct: 142 LELWREDIRSIEGKFGTGIQSYFSFLRFLVLLNLVIFLIIFMLVLLPVLLTKYKITNSSF 201
Query: 471 IIIPQFTVAKKNTL---QFTGLEFF--------TGVGYFRDTVMYYGFYTNSTIQHGNSG 519
++IP + K+ T+ +GL +F +G G+ +T ++YG YT ++ N
Sbjct: 202 VLIPFKDMDKQCTVYPVSSSGLIYFYSYIIDLLSGTGFLEETSLFYGHYTIDGVKFQNF- 260
Query: 520 ASYNMQLAYIFTIGACLTTCFFSLLFSMAKYFRNNFINPHIYSGGITKLIFC-WDFTVTH 578
+Y++ LAY+ + A L ++ + F+ N I + IF WDF +T+
Sbjct: 261 -TYDLPLAYLLSTIASLALSLLWIVKRSVEGFKINLIRSEEHFQSYCNKIFAGWDFCITN 319
Query: 579 EKAVKLKQKNLSTEIRENLSE--LRQENSKLTFNQLLTRFSAYMVAWVVSTGVAIACCAA 636
LK +L E+R +L E +RQ+ ++ T + + +S + + V AC A
Sbjct: 320 RSMADLKHSSLRYELRADLEEERMRQKIAERTSEETIRIYSLRLFLNCIVLAVLGACFYA 379
Query: 637 VYYLAEYNLEFLKTHSNPGA------VLLLP-FVVSCINLAVPCIYSMFRLVERYEMPRH 689
+Y ++ E +K + +L LP V++ N P I++ E Y P
Sbjct: 380 IYVATVFSQEHMKKEIDKMVFGENLFILYLPSIVITLANFITPMIFAKIIRYEDYS-PGF 438
Query: 690 EVYVLLIRNIFLKISIIGILCYYWLNTVALSGEE-------------CWETLIGQDIYRL 736
E+ + ++R +F++++ I +L + + + ++ CWET +GQ++Y+L
Sbjct: 439 EIRLTILRCVFMRLATICVLVFTLGSKITSCDDDTCDLCGYNQKLYPCWETQVGQEMYKL 498
Query: 737 LLMDFVFSLVNSFLGEFLRRII-----GMQLITSLGLQEFDIARNVLELIYAQTLVWIGI 791
++ DF+ L + +F R+++ +LI G QEF I NVL ++Y QT+ WIG
Sbjct: 499 MIFDFIIILAVTLFVDFPRKLLVTYCSSCKLIQCWGQQEFAIPDNVLGIVYGQTICWIGA 558
Query: 792 FFCPLLPFIQMIMLFIMFYSKNISLMMNFQPPSKAWRASQMMTFFIFLLFFPSFTGVLCT 851
FF PLLP I + I+FY K SL+ +P + +RAS FF+ +L ++
Sbjct: 559 FFSPLLPAIATLKFIIIFYVKEWSLLYTCRPSPRPFRASNSNFFFLLVLLIGLCLAII-P 617
Query: 852 LAITIWRLKPSADCGPFRGLPLFIHSIYSWIDTLSTRPGYLWVVWIYRNLIGSVHFFFIL 911
L I+I R+ S CGPF I T+ST P L + + + S F
Sbjct: 618 LTISISRIPSSKACGPFTNFNTTWEVIPK---TVSTFPSSL---QSFIHGVTSEAFAVPF 671
Query: 912 TLIVLIITYLYWQITEGRKIMIRLLHEQIINEGKDKMFLIEKLIKLQ 958
+I+ +I + + + K ++ L EQ+ E +DK +LI+KL + Q
Sbjct: 672 FMIICLIMFYFIALAGAHKRVVIQLREQLSLESRDKCYLIQKLTEAQ 718
>gi|238550100 transmembrane channel-like 7 isoform b [Homo sapiens]
Length = 613
Score = 228 bits (582), Expect = 2e-59
Identities = 166/604 (27%), Positives = 291/604 (48%), Gaps = 66/604 (10%)
Query: 411 SRAYRRSKNSLSEILNSISLWQKTLKIIGGKFGTSVLSYFNFLRWLLKFNIFSFIL---- 466
S++++R E+ + LW++ ++ I GKFGT + SYF+FLR+L+ N+ F++
Sbjct: 15 SKSWKRFLEKAREMTTHLELWREDIRSIEGKFGTGIQSYFSFLRFLVLLNLVIFLIIFML 74
Query: 467 -------------NFSFIIIPQFTVAKKNTL---QFTGLEFF--------TGVGYFRDTV 502
N SF++IP + K+ T+ +GL +F +G G+ +T
Sbjct: 75 VLLPVLLTKYKITNSSFVLIPFKDMDKQCTVYPVSSSGLIYFYSYIIDLLSGTGFLEETS 134
Query: 503 MYYGFYTNSTIQHGNSGASYNMQLAYIFTIGACLTTCFFSLLFSMAKYFRNNFINPHIYS 562
++YG YT ++ N +Y++ LAY+ + A L ++ + F+ N I +
Sbjct: 135 LFYGHYTIDGVKFQNF--TYDLPLAYLLSTIASLALSLLWIVKRSVEGFKINLIRSEEHF 192
Query: 563 GGITKLIFC-WDFTVTHEKAVKLKQKNLSTEIRENLSE--LRQENSKLTFNQLLTRFSAY 619
IF WDF +T+ LK +L E+R +L E +RQ+ ++ T + + +S
Sbjct: 193 QSYCNKIFAGWDFCITNRSMADLKHSSLRYELRADLEEERMRQKIAERTSEETIRIYSLR 252
Query: 620 MVAWVVSTGVAIACCAAVYYLAEYNLEFLKTHSNPGA------VLLLP-FVVSCINLAVP 672
+ + V AC A+Y ++ E +K + +L LP V++ N P
Sbjct: 253 LFLNCIVLAVLGACFYAIYVATVFSQEHMKKEIDKMVFGENLFILYLPSIVITLANFITP 312
Query: 673 CIYSMFRLVERYEMPRHEVYVLLIRNIFLKISIIGILCYYWLNTVALSGEE--------- 723
I++ E Y P E+ + ++R +F++++ I +L + + + ++
Sbjct: 313 MIFAKIIRYEDYS-PGFEIRLTILRCVFMRLATICVLVFTLGSKITSCDDDTCDLCGYNQ 371
Query: 724 ----CWETLIGQDIYRLLLMDFVFSLVNSFLGEFLRRII-----GMQLITSLGLQEFDIA 774
CWET +GQ++Y+L++ DF+ L + +F R+++ +LI G QEF I
Sbjct: 372 KLYPCWETQVGQEMYKLMIFDFIIILAVTLFVDFPRKLLVTYCSSCKLIQCWGQQEFAIP 431
Query: 775 RNVLELIYAQTLVWIGIFFCPLLPFIQMIMLFIMFYSKNISLMMNFQPPSKAWRASQMMT 834
NVL ++Y QT+ WIG FF PLLP I + I+FY K SL+ +P + +RAS
Sbjct: 432 DNVLGIVYGQTICWIGAFFSPLLPAIATLKFIIIFYVKEWSLLYTCRPSPRPFRASNSNF 491
Query: 835 FFIFLLFFPSFTGVLCTLAITIWRLKPSADCGPFRGLPLFIHSIYSWIDTLSTRPGYLWV 894
FF+ +L ++ L I+I R+ S CGPF I T+ST P L
Sbjct: 492 FFLLVLLIGLCLAII-PLTISISRIPSSKACGPFTNFNTTWEVIPK---TVSTFPSSL-- 545
Query: 895 VWIYRNLIGSVHFFFILTLIVLIITYLYWQITEGRKIMIRLLHEQIINEGKDKMFLIEKL 954
+ + + S F +I+ +I + + + K ++ L EQ+ E +DK +LI+KL
Sbjct: 546 -QSFIHGVTSEAFAVPFFMIICLIMFYFIALAGAHKRVVIQLREQLSLESRDKCYLIQKL 604
Query: 955 IKLQ 958
+ Q
Sbjct: 605 TEAQ 608
>gi|23943900 transmembrane channel-like 8 [Homo sapiens]
Length = 726
Score = 197 bits (501), Expect = 4e-50
Identities = 153/591 (25%), Positives = 274/591 (46%), Gaps = 64/591 (10%)
Query: 415 RRSKNSLSEILNSISLWQKTLKIIGGKFGTSVLSYFNFLRWLLKFNIFSFILNFSFIIIP 474
RR + + + + LW+ L IGG FGT + SYF FLR+LL N+ S +L SF+++P
Sbjct: 75 RRLREAAQRLARGLGLWEGALYEIGGLFGTGIRSYFTFLRFLLLLNLLSLLLTASFVLLP 134
Query: 475 QFTVAKKN-------TLQFTG--------LEFFTGVGY------FRDTVMYYGFYTNSTI 513
+ + TLQ G L F + + F +T ++YG Y
Sbjct: 135 LVWLRPPDPGPTLNLTLQCPGSRQSPPGVLRFHNQLWHVLTGRAFTNTYLFYGAYRVGP- 193
Query: 514 QHGNSGASYNMQLAYIFTIGACLTTCFFSLLFSMAKYFRNNFINPHIYSGGITKLIFC-W 572
S + Y+++LAY+ + ACL CF L M K + Y ++ +F W
Sbjct: 194 ---ESSSVYSIRLAYLLSPLACLLLCFCGTLRRMVKGLPQKTLLGQGYQAPLSAKVFSSW 250
Query: 573 DFTVTHEKAVKLKQKNLSTEIRENLSELR--QENSKLTFNQLLTRFSAYMVAWVVSTGVA 630
DF + ++A +K+ +S E + L E R Q + T Q R +Y+ V++ +
Sbjct: 251 DFCIRVQEAATIKKHEISNEFKVELEEGRRFQLMQQQTRAQTACRLLSYLRVNVLNGLLV 310
Query: 631 IACCAAVYYLAEYNLEFLKTHSNPGAVLLL----PFVVSCINLAVPCIYSMFRLVERYEM 686
+ +A+++ +Y+ + + LLL P V++ +N P +++ +E Y
Sbjct: 311 VGAISAIFWATKYSQD----NKEESLFLLLQYLPPGVIALVNFLGPLLFTFLVQLENYP- 365
Query: 687 PRHEVYVLLIRNIFLKISIIGILCYYWLNTVALSGEE---------------CWETLIGQ 731
P EV + LI + LK++ +G+ T+ G + CWE +G+
Sbjct: 366 PNTEVNLTLIWCVVLKLASLGMFSVSLGQTILCIGRDKSSCESYGYNVCDYQCWENSVGE 425
Query: 732 DIYRLLLMDFVFSLVNSFLGEFLRRII----GMQLITSLGLQEFDIARNVLELIYAQTLV 787
++Y+L + +F+ ++ +FL RR++ + L +EF + +NVL+++ QT+
Sbjct: 426 ELYKLSIFNFLLTVAFAFLVTLPRRLLVDRFSGRFWAWLEREEFLVPKNVLDIVAGQTVT 485
Query: 788 WIGIFFCPLLPFIQMIMLFIMFYSKNISLMMNFQPPSKAWRASQMMTFFIFLLFFPSFTG 847
W+G+F+CPLLP + + LF+ FY K +L+ N + S+ +RAS TFF L+
Sbjct: 486 WMGLFYCPLLPLLNSVFLFLTFYIKKYTLLKNSRASSRPFRASS-STFFFQLVLLLGLLL 544
Query: 848 VLCTLAITIWRLKPSADCGPFRGLPLFIHSIYSW-IDTLSTRPGYLWVVWIYRNLIGSVH 906
L + + S DCG LF + W + G + + +GS
Sbjct: 545 AAVPLGYVVSSIHSSWDCG------LFTNYSAPWQVVPELVALGLPPIGQRALHYLGSHA 598
Query: 907 FFFILTLIVLIITYLYWQITEGRKIMIRLLHEQIINEGKDKMFLIEKLIKL 957
F F L +++ ++ + T+ I L +Q++ + ++K L+E L +L
Sbjct: 599 FSFPLLIMLSLVLTVCVSQTQANARAIHRLRKQLVWQVQEKWHLVEDLSRL 649
>gi|21389589 transmembrane channel-like 4 isoform 2 [Homo sapiens]
Length = 706
Score = 182 bits (461), Expect = 2e-45
Identities = 158/601 (26%), Positives = 267/601 (44%), Gaps = 74/601 (12%)
Query: 411 SRAYRRSKNSLSEILNSISLWQKTLKIIGGKFGTSVLSYFNFLRWLLKFNIFSFILNFSF 470
+R RRSK E L S+ W TLK IGG+FG SYF+ LR+LL N+ + +L
Sbjct: 119 ARLLRRSKEKTKEGLRSLQPWAWTLKRIGGQFGAGTESYFSLLRFLLLLNVLASVLMACM 178
Query: 471 IIIP--------------------QFTVAKKNTLQFTGLEF--FTGVGYFRDTVMYYGFY 508
++P + + + F F +G GY + ++YGFY
Sbjct: 179 TLLPTWLGGAPPGPPGPDISSPCGSYNPHSQGLVTFATQLFNLLSGEGYLEWSPLFYGFY 238
Query: 509 TNSTIQHGNSGASYNMQLAYIFTIGACLTTCFFSLLFSMAKYFRNNFINPHIYSGGITKL 568
+Y L + F +G C +L + + +
Sbjct: 239 P----PRPRLAVTY---LCWAFAVGLI---CLLLILHRSVSGLKQTLLAESEALTSYSHR 288
Query: 569 IF-CWDFTVTHEKAVKLKQKNLSTEIRENLSE--LRQENSKLTFNQLLTRFSAYMVAWVV 625
+F WDF + + V+L+Q+ + E++ L E +R++ + T Q + ++ ++
Sbjct: 289 VFSAWDFGLCGDVHVRLRQRIILYELKVELEETVVRRQAAVRTLGQQARVWLVRVLLNLL 348
Query: 626 STGVAIACCAAVYYLAEYNLEFLKTHSNPGAVLL------LPFV-VSCINLAVPCIYSMF 678
+ A VY+ +E + LL LP + ++ +N +P ++ +
Sbjct: 349 VVALLGAAFYGVYWATGCTVELQEMPLVQELPLLKLGVNYLPSIFIAGVNFVLPPVFKLI 408
Query: 679 RLVERYEMPRHEVYVLLIRNIFLKISIIGILCYYWLNTVALSGEE--------------- 723
+E Y R V++LL R +FL+++ + +L + N + G+
Sbjct: 409 APLEGYTRSRQIVFILL-RTVFLRLASLVVLLFSLWNQITCGGDSEAEDCKTCGYNYKQL 467
Query: 724 -CWETLIGQDIYRLLLMDFVFSLVNSFLGEFLRRII-GM---QLITSLGLQEFDIARNVL 778
CWET++GQ++Y+LLL D + L + L +F R+++ G+ L G QEF + VL
Sbjct: 468 PCWETVLGQEMYKLLLFDLLTVLAVALLIQFPRKLLCGLCPGALGRLAGTQEFQVPDEVL 527
Query: 779 ELIYAQTLVWIGIFFCPLLPFIQMIMLFIMFYSKNISLMMNFQPPSKAWRASQMMTFF-I 837
LIYAQT+VW+G FFCPLLP + + ++FY K ++L P ++ +RAS FF +
Sbjct: 528 GLIYAQTVVWVGSFFCPLLPLLNTVKFLLLFYLKKLTLFSTCSPAARTFRASAANFFFPL 587
Query: 838 FLLFFPSFTGVLCTLAITIWRLKPSADCGPFRGLPLFIHSIYSWIDTL-STRPGYLWVVW 896
LL + + V L +I+ + PS CGPFRG I I +L T +L+
Sbjct: 588 VLLLGLAISSV--PLLYSIFLIPPSKLCGPFRGQSSIWAQIPESISSLPETTQNFLF--- 642
Query: 897 IYRNLIGSVHFFFILTLIVLIITYLYWQITEGRKIMIRLLHEQIINEGKDKMFLIEKLIK 956
+G+ F L LI I+ + +I L Q E ++K+FL + +
Sbjct: 643 ----FLGTQAFAVPLLLISSILMAYTVALANSYGRLISELKRQRQTEAQNKVFLARRAVA 698
Query: 957 L 957
L
Sbjct: 699 L 699
>gi|223718080 transmembrane channel-like 4 isoform 1 [Homo sapiens]
Length = 712
Score = 182 bits (461), Expect = 2e-45
Identities = 158/601 (26%), Positives = 267/601 (44%), Gaps = 74/601 (12%)
Query: 411 SRAYRRSKNSLSEILNSISLWQKTLKIIGGKFGTSVLSYFNFLRWLLKFNIFSFILNFSF 470
+R RRSK E L S+ W TLK IGG+FG SYF+ LR+LL N+ + +L
Sbjct: 125 ARLLRRSKEKTKEGLRSLQPWAWTLKRIGGQFGAGTESYFSLLRFLLLLNVLASVLMACM 184
Query: 471 IIIP--------------------QFTVAKKNTLQFTGLEF--FTGVGYFRDTVMYYGFY 508
++P + + + F F +G GY + ++YGFY
Sbjct: 185 TLLPTWLGGAPPGPPGPDISSPCGSYNPHSQGLVTFATQLFNLLSGEGYLEWSPLFYGFY 244
Query: 509 TNSTIQHGNSGASYNMQLAYIFTIGACLTTCFFSLLFSMAKYFRNNFINPHIYSGGITKL 568
+Y L + F +G C +L + + +
Sbjct: 245 P----PRPRLAVTY---LCWAFAVGLI---CLLLILHRSVSGLKQTLLAESEALTSYSHR 294
Query: 569 IF-CWDFTVTHEKAVKLKQKNLSTEIRENLSE--LRQENSKLTFNQLLTRFSAYMVAWVV 625
+F WDF + + V+L+Q+ + E++ L E +R++ + T Q + ++ ++
Sbjct: 295 VFSAWDFGLCGDVHVRLRQRIILYELKVELEETVVRRQAAVRTLGQQARVWLVRVLLNLL 354
Query: 626 STGVAIACCAAVYYLAEYNLEFLKTHSNPGAVLL------LPFV-VSCINLAVPCIYSMF 678
+ A VY+ +E + LL LP + ++ +N +P ++ +
Sbjct: 355 VVALLGAAFYGVYWATGCTVELQEMPLVQELPLLKLGVNYLPSIFIAGVNFVLPPVFKLI 414
Query: 679 RLVERYEMPRHEVYVLLIRNIFLKISIIGILCYYWLNTVALSGEE--------------- 723
+E Y R V++LL R +FL+++ + +L + N + G+
Sbjct: 415 APLEGYTRSRQIVFILL-RTVFLRLASLVVLLFSLWNQITCGGDSEAEDCKTCGYNYKQL 473
Query: 724 -CWETLIGQDIYRLLLMDFVFSLVNSFLGEFLRRII-GM---QLITSLGLQEFDIARNVL 778
CWET++GQ++Y+LLL D + L + L +F R+++ G+ L G QEF + VL
Sbjct: 474 PCWETVLGQEMYKLLLFDLLTVLAVALLIQFPRKLLCGLCPGALGRLAGTQEFQVPDEVL 533
Query: 779 ELIYAQTLVWIGIFFCPLLPFIQMIMLFIMFYSKNISLMMNFQPPSKAWRASQMMTFF-I 837
LIYAQT+VW+G FFCPLLP + + ++FY K ++L P ++ +RAS FF +
Sbjct: 534 GLIYAQTVVWVGSFFCPLLPLLNTVKFLLLFYLKKLTLFSTCSPAARTFRASAANFFFPL 593
Query: 838 FLLFFPSFTGVLCTLAITIWRLKPSADCGPFRGLPLFIHSIYSWIDTL-STRPGYLWVVW 896
LL + + V L +I+ + PS CGPFRG I I +L T +L+
Sbjct: 594 VLLLGLAISSV--PLLYSIFLIPPSKLCGPFRGQSSIWAQIPESISSLPETTQNFLF--- 648
Query: 897 IYRNLIGSVHFFFILTLIVLIITYLYWQITEGRKIMIRLLHEQIINEGKDKMFLIEKLIK 956
+G+ F L LI I+ + +I L Q E ++K+FL + +
Sbjct: 649 ----FLGTQAFAVPLLLISSILMAYTVALANSYGRLISELKRQRQTEAQNKVFLARRAVA 704
Query: 957 L 957
L
Sbjct: 705 L 705
>gi|21071070 transmembrane channel-like 1 [Homo sapiens]
Length = 760
Score = 138 bits (347), Expect = 3e-32
Identities = 130/563 (23%), Positives = 242/563 (42%), Gaps = 88/563 (15%)
Query: 431 WQKTLKIIGGKFGTSVLSYFNFLRWLLKFNIFSFILNFSFIIIPQFT------------- 477
W+ +K I +FG+SV SYF FLRW+ N+ FIL FS I++P++
Sbjct: 170 WENKIKAIESQFGSSVASYFLFLRWMYGVNMVLFILTFSLIMLPEYLWGLPYGSLPRKTV 229
Query: 478 --VAKKNTLQFTGLEFFTGVGYFRDTVMYYGFYTNS-TIQHGNSGASYNMQLAYIFTIGA 534
+ + F L F G+ + +V++YG+Y N TI N + + L+Y
Sbjct: 230 PRAEEASAANFGVLYDFNGLAQY--SVLFYGYYDNKRTIGWMN----FRLPLSYFLVGIM 283
Query: 535 CLTTCFFSLLFSMAKYFRNNFINPHIYSGGITKLIFCWDFTVTHEKAVKLKQKNLSTEIR 594
C+ F +L +M K ++ K+ WD+ + + + K +++ +
Sbjct: 284 CIGYSFLVVLKAMTKNIGDDGGGDDNTFNFSWKVFTSWDYLIGNPETADNKFNSITMNFK 343
Query: 595 ENLSELRQENSKLTFNQLLTRFSAYMVAWVVSTGVAIACCAAVYYLAEYNLEFLKTHSNP 654
E ++E ++ +++ N L RF ++ + V + +++ + + EF + +P
Sbjct: 344 EAITE--EKAAQVEENVHLIRFLRFLANFFVFLTLG-GSGYLIFWAVKRSQEFAQ--QDP 398
Query: 655 GAVLL-----LPFVVSCINLAVPCIYSMFRLVERY------EMPRHEVYVLLIRNIFLKI 703
+ + V+S + + P ++ +F +E Y + ++ LL+ N+++ I
Sbjct: 399 DTLGWWEKNEMNMVMSLLGMFCPTLFDLFAELEDYHPLIALKWLLGRIFALLLGNLYVFI 458
Query: 704 SIIG------------------------ILCY------------YWLNTVALSGEECWET 727
+ I Y ++++ + CWET
Sbjct: 459 LALMDEINNKIEEEKLVKANITLWEANMIKAYNASFSENSTGPPFFVHPADVPRGPCWET 518
Query: 728 LIGQDIYRLLLMDFVFSLVNSFLGEFLR----RIIGMQLITSL-----GLQEFDIARNVL 778
++GQ+ RL + D + + V +G+FLR R L EFDI+ NVL
Sbjct: 519 MVGQEFVRLTVSDVLTTYVTILIGDFLRACFVRFCNYCWCWDLEYGYPSYTEFDISGNVL 578
Query: 779 ELIYAQTLVWIGIFFCPLLPFIQMIMLFIMFYSKNISLMMNFQPPSKAWRASQMMTFFIF 838
LI+ Q ++W+G FF P LP I ++ L Y + ++M P ++ ++AS+ F++
Sbjct: 579 ALIFNQGMIWMGSFFAPSLPGINILRLHTSMYFQCWAVMCCNVPEARVFKASRSNNFYLG 638
Query: 839 LLFFPSFTGVLCTLAITIWRLKPSADCGPFRGLPLFIHSIYSWIDTLSTRPGYLWVVWIY 898
+L F + L + + L PS DCGPF G + ++ I W+ I
Sbjct: 639 MLLLILFLSTMPVLYMIV-SLPPSFDCGPFSGK----NRMFEVIGETLEHDFPSWMAKIL 693
Query: 899 RNLIGSVHFFFILTLIVLIITYL 921
R L ++ ++VL I YL
Sbjct: 694 RQLSNPGLVIAVILVMVLAIYYL 716
>gi|94536852 transmembrane cochlear-expressed protein 2 [Homo
sapiens]
Length = 906
Score = 134 bits (337), Expect = 4e-31
Identities = 137/588 (23%), Positives = 245/588 (41%), Gaps = 109/588 (18%)
Query: 366 IKAIRNQPRTMEEK----RNLRKIVDKE-------KSKQTHRILQLNCCIQCLNSISRAY 414
I +R++P M +K R ++ V+K K KQ + L +++ +
Sbjct: 167 IATMRSKPWPMAKKLTELREAQEFVEKYEGALGKGKGKQLYAYKML---------MAKKW 217
Query: 415 RRSKNSLSEILNSISLWQKTLKIIGGKFGTSVLSYFNFLRWLLKFNIFSFILNFSFIIIP 474
+ K W+ +K I FG+SV SYF FLRW+ N+ F L F +IIP
Sbjct: 218 VKFKRDFDNFKTQCIPWEMKIKDIESHFGSSVASYFIFLRWMYGVNLVLFGLIFGLVIIP 277
Query: 475 QFTVA---------------KKNTLQFTGLEFFTGVGYFRDTVMYYGFYTNSTIQHGNSG 519
+ + ++ + F+ L F G Y + + ++YG+Y N Q
Sbjct: 278 EVLMGMPYGSIPRKTVPRAEEEKAMDFSVLWDFEG--YIKYSALFYGYYNN---QRTIGW 332
Query: 520 ASYNMQLAYIFTIGACLTTCFFSLLFSMAKYFRNNFINPHIYSGGIT---KLIFCWDFTV 576
Y + +AY + ++ SMA + + S T K+ WD+ +
Sbjct: 333 LRYRLPMAYFMVGVSVFGYSLIIVIRSMASNTQGSTGEGE--SDNFTFSFKMFTSWDYLI 390
Query: 577 THEKAVKLKQKNLSTEIRENLSELRQENSKLTFNQLLTRFSAYMVAWVVSTGVAIACCAA 636
+ + K +++T +E++ + ++ N + + LTRF + ++ I CC
Sbjct: 391 GNSETADNKYASITTSFKESIVDEQESNKEENIH--LTRFLRVLANFL------IICCLC 442
Query: 637 -----VYYLAEYNLEFLKTHSNPGAVLL-LPFVVSCINLAVPCIYSMFRLVERYEMPRH- 689
+Y++ + + +F K + + V+S + + P ++ +E Y PR
Sbjct: 443 GSGYLIYFVVKRSQQFSKMQNVSWYERNEVEIVMSLLGMFCPPLFETIAALENYH-PRTG 501
Query: 690 ------EVYVLLIRNIFL--------------------KISIIGILCYY----W------ 713
++ L + N++ I+ + YY W
Sbjct: 502 LKWQLGRIFALFLGNLYTFLLALMDDVHLKLANEETIKNITHWTLFNYYNSSGWNESVPR 561
Query: 714 --LNTVALSGEECWETLIGQDIYRLLLMDFVFSLVNSFLGEFLRR--IIGMQLITSLGLQ 769
L+ + CWET +G + RL + D + + + LG+FLR + M L+
Sbjct: 562 PPLHPADVPRGSCWETAVGIEFMRLTVSDMLVTYITILLGDFLRACFVRFMNYCWCWDLE 621
Query: 770 -------EFDIARNVLELIYAQTLVWIGIFFCPLLPFIQMIMLFIMFYSKNISLMMNFQP 822
EFDI+ NVL LI+ Q ++W+G F+ P L I ++ L Y + ++M + P
Sbjct: 622 AGFPSYAEFDISGNVLGLIFNQGMIWMGSFYAPGLVGINVLRLLTSMYFQCWAVMSSNVP 681
Query: 823 PSKAWRASQMMTFFIFLLFFPSFTGVLCTLAITIWRLKPSADCGPFRG 870
+ ++AS+ F++ LL F +L +A TI L PS DCGPF G
Sbjct: 682 HERVFKASRSNNFYMGLLLLVLFLSLL-PVAYTIMSLPPSFDCGPFSG 728
>gi|122937502 transmembrane channel-like 3 [Homo sapiens]
Length = 1100
Score = 103 bits (258), Expect = 6e-22
Identities = 75/261 (28%), Positives = 127/261 (48%), Gaps = 23/261 (8%)
Query: 722 EECWETLIGQDIYRLLLMDFVFSLVNSFLGEFLRRIIGMQL-----------ITSLGLQE 770
++CWET +GQ++ +L ++D +F++ + L +F R + L G E
Sbjct: 497 DQCWETYVGQEMLKLSIIDMLFTVASILLIDFFRGLFVRYLSDYWCWDLESKFPEYG--E 554
Query: 771 FDIARNVLELIYAQTLVWIGIFFCPLLPFIQMIMLFIMFYSKNISLMMNFQPPSKAWRAS 830
F IA NVL L+Y Q ++W+G FF P LP ++ L + Y ++ +++ P + +RAS
Sbjct: 555 FKIAENVLHLVYNQGMIWMGAFFSPCLPAFNVLKLIGLMYLRSWAVLTCNVPHQQVFRAS 614
Query: 831 QMMTFFIFLLFFPSFTGVLCTLAITIWRLKPSADCGPFRGLPLFIHSIYSWIDTLSTRPG 890
+ F++ +L F F +L T+ I R KPS +CGPF G IY + +
Sbjct: 615 RSNNFYLAMLLFMLFLCMLPTI-FAIVRYKPSLNCGPFSGQ----EKIYDIVSETIEKDF 669
Query: 891 YLWVVWIYRNLIGSVHFFFILTLIVLIITYLYWQITEGRKIMIRLLHEQIIN---EGKDK 947
+W + ++ V + L+ ++I YL I K+ L QI N E K K
Sbjct: 670 PVWFGSVVGHISSPVVILPAVLLLFMLIYYLQ-SIARSLKLSNHQLKMQIQNARSEDKKK 728
Query: 948 MF-LIEKLIKLQDMEKKANPS 967
+ ++E I+ Q+ K P+
Sbjct: 729 VAQMVEARIQTQEESTKKLPN 749
Score = 79.7 bits (195), Expect = 1e-14
Identities = 78/310 (25%), Positives = 128/310 (41%), Gaps = 24/310 (7%)
Query: 431 WQKTLKIIGGKFGTSVLSYFNFLRWLLKFNIFSFILNFSFIIIPQF------------TV 478
W+ +K I FG+ V SYF FLRWL NI I+ +FI+IP+ T+
Sbjct: 123 WEMRIKKIESHFGSGVASYFIFLRWLFGINIVLTIMTGAFIVIPELIAGQPFGSTARKTI 182
Query: 479 AKKNTLQFTGLEFFTGV-GYFRDTVMYYGFYTNSTIQHGNSGASYNMQLAYIFTIGACLT 537
K+ L+ + GY + +V++YG+Y + A Y + LAY A
Sbjct: 183 PKEQVSSAQDLDTVWSLGGYLQYSVLFYGYYGR---ERKIGRAGYRLPLAYFLVGMAVFA 239
Query: 538 TCFFSLLFSMAKYFRNNFINPHIYSGGITKLIFC-WDFTVTHEKAVKLKQKNLSTEIREN 596
F LL MAK R + + + +FC WD+ + + +A + K + IRE
Sbjct: 240 YSFIILLKKMAKNSRTSLASASNENYTFCWRVFCAWDYLIGNPEAAESKTAAIVNSIREA 299
Query: 597 LSELRQENSKLTFNQLLTRFSAYMVAWVVSTGVAIACCAAVYYLAE--YNLEFLKTHSNP 654
+ E E K L ++A ++ +Y++ + LE K
Sbjct: 300 ILE---EQEKKKSKNLAVTICLRIIANILVLLSLAGSIYLIYFVVDRSQKLEQSKKELTL 356
Query: 655 GAVLLLPFVVSCINLAVPCIYSMFRLVERYEMPRHEVYVLLIRNIFLKISIIGILCYYWL 714
+ VVS + + P + + +E Y PR + L R + L + + L L
Sbjct: 357 WEKNEVSVVVSLVTMIAPSAFDLIAALEMYH-PRTTLRFQLARVLVLYLGNLYSLIIALL 415
Query: 715 NTV-ALSGEE 723
+ V ++S EE
Sbjct: 416 DKVNSMSIEE 425
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 52.8 bits (125), Expect = 2e-06
Identities = 46/196 (23%), Positives = 61/196 (31%), Gaps = 31/196 (15%)
Query: 34 GYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSLSNPDYSGTRSNAYSA 93
G P +PGP P PG R R P PG + P +P ++ +P G +
Sbjct: 1018 GSPGLPGP---PGLPGQRGEEGPPGMRGSPGPPGPIGPPGFPGAVGSPGLPGLQGERGLT 1074
Query: 94 ASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQRNPDFAGSSSSGNYAGSRTHP 153
P QP YPG+ P G Y GS
Sbjct: 1075 GLTGDKGEP------------------GPPGQPGYPGATGPPGLPGIKGERGYTGSAGEK 1116
Query: 154 DHFGSLEPDYPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRINPYADSLGKPDYPGADIQ 213
EP PG++ PGP G + N + G+P +PG
Sbjct: 1117 G-----EPGPPGSEGLPGPPGPAGPRGERGPQGNSGEKGDQ-----GFQGQPGFPGPPGP 1166
Query: 214 PNSPPFFGEPDYPSAE 229
P P G P P +
Sbjct: 1167 PGFPGKVGSPGPPGPQ 1182
Score = 43.1 bits (100), Expect = 0.001
Identities = 63/241 (26%), Positives = 78/241 (32%), Gaps = 28/241 (11%)
Query: 14 PDYPDYSGSQNRTQGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTR---------PD 64
P P G Q +G +G P PGP+ P +PG +P +
Sbjct: 1023 PGPPGLPG-QRGEEGPPGMRGSPGPPGPIGPPGFPGAVGSPGLPGLQGERGLTGLTGDKG 1081
Query: 65 YPGSLAEPNYPRSLSN---PDYSGTRSNAYSAASRTSPDHPTS--LPEPDYSEFQSHPYH 119
PG +P YP + P G R SA + P P S LP P P
Sbjct: 1082 EPGPPGQPGYPGATGPPGLPGIKGERGYTGSAGEKGEPGPPGSEGLPGP------PGPAG 1135
Query: 120 RASSRQPD-YPGSQRNPDFAGSSSSGNYAGSRTHPDHFGSLEPDYPGAQSNSDHPGPRAN 178
R P G + + F G G P GS P PG Q+ G R
Sbjct: 1136 PRGERGPQGNSGEKGDQGFQGQPGFPGPPGPPGFPGKVGS--PGPPGPQAEKGSEGIRGP 1193
Query: 179 LNHPGSRKNLEHTSFRINPYADSL-GKPDYPG--ADIQPNSPP-FFGEPDYPSAEDNQNL 234
PGS + D L GK PG D P PP G P + + L
Sbjct: 1194 SGLPGSPGPPGPPGIQGPAGLDGLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGL 1253
Query: 235 P 235
P
Sbjct: 1254 P 1254
Score = 41.2 bits (95), Expect = 0.005
Identities = 51/215 (23%), Positives = 73/215 (33%), Gaps = 31/215 (14%)
Query: 19 YSGS--QNRTQGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRT---RPDYPGSLAEPN 73
Y+GS + G ++G P PGP G + N + +P +PG P
Sbjct: 1109 YTGSAGEKGEPGPPGSEGLPGPPGPAGPRGERGPQGNSGEKGDQGFQGQPGFPGPPGPPG 1168
Query: 74 YPRSLSNPDYSGTRSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQR 133
+P + +P G ++ S R P+ LP S P PG Q
Sbjct: 1169 FPGKVGSPGPPGPQAEKGSEGIRG----PSGLP--------------GSPGPPGPPGIQG 1210
Query: 134 NPDFAGSSSSGNYAGSRTHPDHFGSL----EPDYPGAQSNSDHPGPRANLNHPGSRKNLE 189
G G R P G P + G + PGP+ + PG +
Sbjct: 1211 PAGLDGLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPPGSTG 1270
Query: 190 HTSFRINPYA-DSLGKPDYPGADIQPNSPPFFGEP 223
P A G+P PG + P PP G+P
Sbjct: 1271 RPGAEGEPGAMGPQGRPGPPG-HVGPPGPP--GQP 1302
Score = 39.7 bits (91), Expect = 0.014
Identities = 60/248 (24%), Positives = 78/248 (31%), Gaps = 53/248 (21%)
Query: 39 PGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSLSNPDYS-----------GTR 87
PGP + PG P ++ + RP PG + P P S G R
Sbjct: 1263 PGPPGSTGRPGAEGEPGAMGPQGRPGPPGHVGPPGPPGQPGPAGISAVGLKGDRGATGER 1322
Query: 88 SNAYSAASRTSPDHPTSLPEP--DYSEFQSHPYHRASSRQPDYPGSQRNPDFAGSSSSGN 145
A P HP EP D + + P + P PG + +P AG
Sbjct: 1323 GLAGLPGQPGPPGHPGPPGEPGTDGAAGKEGPPGKQGFYGP--PGPKGDPGAAGQKGQAG 1380
Query: 146 Y---AGSRTHPDHFGSLEPDYP----GAQSNSDHPGPRANLNHPG--------------- 183
AG P GS+ P P G + + PGP + PG
Sbjct: 1381 EKGRAGMPGGPGKSGSMGPVGPPGPAGERGHPGAPGPSGSPGLPGVPGSMGDMVNYDEIK 1440
Query: 184 -----------SRKNLEHTSFRINPY--ADSLGKPDYPGADIQPNSPPFFGEPDYP---S 227
+ +TS P A + G+P PG D P P G P P
Sbjct: 1441 RFIRQEIIKMFDERMAYYTSRMQFPMEMAAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIG 1500
Query: 228 AEDNQNLP 235
E Q LP
Sbjct: 1501 REGRQGLP 1508
Score = 31.2 bits (69), Expect = 5.1
Identities = 43/185 (23%), Positives = 55/185 (29%), Gaps = 35/185 (18%)
Query: 14 PDYPDYSGS--------QNRTQGYLKTQGYPDVPGPLNNPDY---------------PGT 50
P +P GS + ++G G P PGP P PG
Sbjct: 1167 PGFPGKVGSPGPPGPQAEKGSEGIRGPSGLPGSPGPPGPPGIQGPAGLDGLDGKDGKPGL 1226
Query: 51 RSNPYSVASRTRPDYPGSLAEPNYPRSLSNPDYSGTRSNAYSAASRTSPDHPTSLPEPDY 110
R +P PG + P + +P G + + S P + EP
Sbjct: 1227 RGDPGPAGP------PGLMGPPGFKGKTGHPGLPGPKGDCGKPGPPGSTGRPGAEGEPGA 1280
Query: 111 SEFQSHPYHRASSRQPDYPGSQRNPDFAGSSSSGNYAGSRTHPDHFGSLEPDYPGAQSNS 170
Q P P PG P AG S+ G G R G PG
Sbjct: 1281 MGPQGRPGPPGHVGPPGPPG---QPGPAGISAVG-LKGDRGATGERGL--AGLPGQPGPP 1334
Query: 171 DHPGP 175
HPGP
Sbjct: 1335 GHPGP 1339
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 51.2 bits (121), Expect = 5e-06
Identities = 88/377 (23%), Positives = 116/377 (30%), Gaps = 50/377 (13%)
Query: 13 DPDYPDYSGSQNRTQGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEP 72
+P P G+ +QG QG PG P PG P S P + G E
Sbjct: 636 EPGPPGQQGNHG-SQGLPGPQGLIGTPGEKGPPGNPGIPGLPGSDGPLGHPGHEGPTGEK 694
Query: 73 NY---PRSLSNPDYSGTRSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYP 129
P S P Y G R ++ +R E + F+ + +P P
Sbjct: 695 GAQGPPGSAGPPGYPGPRGVKGTSGNRGLQGEKGEKGEDGFPGFKGDVGLKGDQGKPGAP 754
Query: 130 GSQRNPDFAGSSSSGNYAGSRTHPDHFGSL-EPDYPGAQSNSDHPGPRANLNHPG----- 183
G + G AG P G + PG PGP+ ++ PG
Sbjct: 755 GPRGEDGPEGPKGQAGQAGEEGPPGSAGEKGKLGVPGLPGYPGRPGPKGSIGFPGPLGPI 814
Query: 184 -----SRKNLEHTSFRINPYADSLGKPDYPGADIQPNSPPFFGEPDYPSAEDNQNLPSTW 238
S K + S G+ PGA QP G+ P + LP
Sbjct: 815 GEKGKSGKTGQPGLEGERGPPGSRGERGQPGATGQPGPKGDVGQDGAPGIPGEKGLPGLQ 874
Query: 239 REPDY-----------SDAENGH-------DYGSSETPKMTRGVL---SRTSSIQPSFRH 277
P + D GH + P GVL +T + P
Sbjct: 875 GPPGFPGPKGPPGHQGKDGRPGHPGQRGELGFQGQTGPPGPAGVLGPQGKTGEVGPLGER 934
Query: 278 RSDDPVGSLWGENDYP--EGIEMASMEMANSYGHSLPGAPGS-GYVNPAYV-GESGPVHA 333
P G GE P EG E A E+ G PG G PA + G GP
Sbjct: 935 GPPGPPGPP-GEQGLPGLEGREGAKGEL---------GPPGPLGKEGPAGLRGFPGPKGG 984
Query: 334 YGNPPLSECDWHKSPQG 350
G+P + K P G
Sbjct: 985 PGDPGPTGLKGDKGPPG 1001
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 50.1 bits (118), Expect = 1e-05
Identities = 57/233 (24%), Positives = 79/233 (33%), Gaps = 17/233 (7%)
Query: 14 PDYPDYSGSQN--RTQGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPG---- 67
P P +G+ T+G + G P PGPL P G + +P PG
Sbjct: 880 PGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGE 939
Query: 68 --SLAEPNYPRSLS--NPDYSGTRSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASS 123
S EP P +P+ G++ P P Y P S
Sbjct: 940 KGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGL---PGIPGVSGPKGYQGLPGDPGQPGLS 996
Query: 124 RQPDYPGSQRNPDFAGSSSSGNYAGSRTHPDHFGSL-EPDYPGAQSNSDHPGPRANLNHP 182
QP PG P G+ G P G++ + +PG Q PGP P
Sbjct: 997 GQPGLPGP---PGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQP 1053
Query: 183 GSRKNLEHTSFRINPYADSLGKPDYPGADIQPNSPPFFGEPDYPSAEDNQNLP 235
GS + +P S+G P PG +P P + G P + + LP
Sbjct: 1054 GSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLP 1106
Score = 46.2 bits (108), Expect = 2e-04
Identities = 51/205 (24%), Positives = 59/205 (28%), Gaps = 9/205 (4%)
Query: 34 GYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSLSNPDYSGTRSNAYSA 93
G P +PGP P PG NP S P PG P P + GT
Sbjct: 1074 GLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPK 1133
Query: 94 ASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQRNPDFAGSSSSGNYAGSRTHP 153
P +P EP HP QP PG + P G G P
Sbjct: 1134 GISGPPGNPGLPGEPGPVGGGGHP------GQPGPPGEKGKPGQDGIPGPAGQKGEPGQP 1187
Query: 154 DHFGSLEPDYPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRINPYADS-LGKPDYPGADI 212
P PG G +PG F P G P PG +
Sbjct: 1188 GFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPAL 1247
Query: 213 Q--PNSPPFFGEPDYPSAEDNQNLP 235
+ +P G P P Q LP
Sbjct: 1248 EGPKGNPGPQGPPGRPGPTGFQGLP 1272
Score = 42.4 bits (98), Expect = 0.002
Identities = 51/215 (23%), Positives = 71/215 (33%), Gaps = 20/215 (9%)
Query: 17 PDYSGSQNRTQGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPR 76
P +G++ +G+ + G+P + GP P PG + P S+ + P G+ P P
Sbjct: 122 PGCNGTKGE-RGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGPPG 180
Query: 77 SLSNPDYSGTRS--NAYSAASRTSPDHPTSLPEPDYS---EFQSHPYHRASSRQPDYPGS 131
P +G P P LP P + FQ + G
Sbjct: 181 IQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQ------GL 234
Query: 132 QRNPDFAGSSSSGNYAGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLNHPGSRKNLEHT 191
Q P G S R F + PG + PG R PG K +
Sbjct: 235 QGPPGPPGQISE----QKRPIDVEFQKGDQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGE 290
Query: 192 SFRINPYADSLGKPDYPGADIQPNSPPFFGEPDYP 226
GKP G + QP P G+P YP
Sbjct: 291 QGE----PGKRGKPGKDGENGQPGIPGLPGDPGYP 321
Score = 41.2 bits (95), Expect = 0.005
Identities = 55/236 (23%), Positives = 72/236 (30%), Gaps = 27/236 (11%)
Query: 13 DPDYPDYSGSQNRTQGYLKTQGYPDVPGP------LNNPDYPGTRSNPYSVASRTRPDYP 66
DP P G+ +G G+P PGP P PG P V P P
Sbjct: 1102 DPGLPGLPGTPG-AKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQP 1160
Query: 67 GSLAEPNYPRSLSNPDYSGTRSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQP 126
G E P P +G + P P P + P
Sbjct: 1161 GPPGEKGKPGQDGIPGPAGQKG---------EPGQP-GFGNPGPPGLPGLSGQKGDGGLP 1210
Query: 127 DYPGSQRNPDFAGSSSSGNYAGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLNHPGSRK 186
PG+ P G + G + P GS P G + N PGP+ PG
Sbjct: 1211 GIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGN---PGPQGPPGRPGP-- 1265
Query: 187 NLEHTSFRINPYADS-LGKPDYPGADIQPNSPPFFGEPDYPSAEDNQNLPSTWREP 241
T F+ P + G P G + +P G P P + +Q P P
Sbjct: 1266 ----TGFQGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNP 1317
Score = 40.0 bits (92), Expect = 0.011
Identities = 51/221 (23%), Positives = 65/221 (29%), Gaps = 33/221 (14%)
Query: 38 VPGPLNNPDYPGTRS-----NPYSVASRTRPDYPGSLAEPNYPRSLSNP------DYSGT 86
+PGP NP YPG P + P P L P P L P ++ G
Sbjct: 166 LPGPKGNPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGP 225
Query: 87 RSNAYSAASRTSPDHPTSLPE---PDYSEFQSHPYHRASSRQPDYPGSQRNPDFAGSSSS 143
+ + P P + E P EFQ R P P R P
Sbjct: 226 KGEKGEQGLQGPPGPPGQISEQKRPIDVEFQKGDQGLPGDRGPPGPPGIRGPPGPPGGEK 285
Query: 144 GNYA-----GSRTHPDHFGSL----------EPDYPGAQSNSDHPGPRANLNHPGSRKNL 188
G G R P G +P YPG G + + PG +
Sbjct: 286 GEKGEQGEPGKRGKPGKDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLV 345
Query: 189 ---EHTSFRINPYADSLGKPDYPGADIQPNSPPFFGEPDYP 226
T I ++G P PG + P G P P
Sbjct: 346 IPRPGTGITIGE-KGNIGLPGLPGEKGERGFPGIQGPPGLP 385
Score = 40.0 bits (92), Expect = 0.011
Identities = 49/206 (23%), Positives = 63/206 (30%), Gaps = 13/206 (6%)
Query: 34 GYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSLSNPDYSGTRSNAYSA 93
G+P PGP PG P + P PG P P P SG + +
Sbjct: 1155 GHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPG-FGNPGPP---GLPGLSGQKGDGGLP 1210
Query: 94 ASRTSPDHPTSLPEPDYSEFQS--HPYHRASSRQPDYPGSQRNPDFAGSSSSGNYAGSRT 151
+P P EP + F P S P G + NP G G +
Sbjct: 1211 GIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQGPPGRPGPTGFQG 1270
Query: 152 HPDHFGSLEPDYPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRINPYADSLGKPDYPGAD 211
P G PG N G + N PG L P G P PG +
Sbjct: 1271 LPGPEGP-----PGLPGNGGIKGEKGNPGQPGL-PGLPGLKGDQGP-PGLQGNPGRPGLN 1323
Query: 212 IQPNSPPFFGEPDYPSAEDNQNLPST 237
P G P +P + +P +
Sbjct: 1324 GMKGDPGLPGVPGFPGMKGPSGVPGS 1349
Score = 37.4 bits (85), Expect = 0.071
Identities = 66/311 (21%), Positives = 92/311 (29%), Gaps = 37/311 (11%)
Query: 34 GYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSLSNP----DYSGTRSN 89
G P PG L P G + + + P PG+ P +P S P + G + +
Sbjct: 500 GLPGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGD 559
Query: 90 AYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQRNP---DFAGSSSSGNY 146
S +P P P P PG + P F G
Sbjct: 560 KGELGSPGAPGLP------------GLPGTPGQDGLPGLPGPKGEPGGITFKGERGPPGN 607
Query: 147 AGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRINPYADSLGKPD 206
G P + G + P G G + +PG + + GKP
Sbjct: 608 PGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNPG-QPGIPGPKGDPGQTITQPGKPG 666
Query: 207 YPGADIQPNSPPFFGEPDYPSAEDNQNLPSTWREPDYSDAENGHDYGSSETPKMTRGVLS 266
PG + G+P P +P + EP G PK G+
Sbjct: 667 LPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGEPGIP----GIGLPGPPGPKGFPGIPG 722
Query: 267 RTSSIQPSFRHRSDDPVGSLWGENDYPEGIEMASMEMANSYGHSLPGAPGSGYVNPAYVG 326
+ R + P G P G E G +LPG PG + P + G
Sbjct: 723 PPGAPGTPGRIGLEGPPG--------PPGFPGPKGEP----GFALPGPPGPPGL-PGFKG 769
Query: 327 ESGPVHAYGNP 337
GP G P
Sbjct: 770 ALGPKGDRGFP 780
Score = 33.5 bits (75), Expect = 1.0
Identities = 77/336 (22%), Positives = 103/336 (30%), Gaps = 64/336 (19%)
Query: 33 QGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAE--PNYPRSLSNPDYSGTRSNA 90
+G+P + GP P PG + P +PG + P +S P G
Sbjct: 373 RGFPGIQGPPGLPGPPGAA----VMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQP 428
Query: 91 YSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQRNPDFAGSSSSGNYAGSR 150
A P P P E +P PG +P G G +
Sbjct: 429 -GAPGLPGPPGPAGPHIPPSDEI----------CEPGPPGPPGSPGDKGLQGEQGVKGDK 477
Query: 151 --THPDHFGSLEPDYPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRINPYADSLGKPDYP 208
T + G+ PG PGP +L PG +K + + P G P P
Sbjct: 478 GDTCFNCIGTGISGPPGQPGLPGLPGPPGSLGFPG-QKGEKGQAGATGP----KGLPGIP 532
Query: 209 GADIQPNSPPFFGEP----DYPSAEDNQNLPSTWREPDYSDAENGHDYGSSETPKMTRGV 264
GA P P GEP +P + ++ + GS P +
Sbjct: 533 GAPGAPGFPGSKGEPGDILTFPGMKGDKG-----------------ELGSPGAPGLPG-- 573
Query: 265 LSRTSSIQPSFRHRSDDPVGSLWGENDYPEGIEMASMEMANSYGHSLPGAPGS------- 317
L T D + L G P GI E LPG PG+
Sbjct: 574 LPGTP---------GQDGLPGLPGPKGEPGGITFKG-ERGPPGNPGLPGLPGNIGPMGPP 623
Query: 318 GYVNPAYVGESGPVHAYGNPPLSECDWHKSPQGQKL 353
G+ P VGE G GNP K GQ +
Sbjct: 624 GFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQTI 659
Score = 32.3 bits (72), Expect = 2.3
Identities = 46/208 (22%), Positives = 65/208 (31%), Gaps = 37/208 (17%)
Query: 27 QGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSLSNPDYSGT 86
+G+ +G+P +PG +PG P + PG P P+ + P G
Sbjct: 50 RGFPGLEGHPGLPG------FPGPEGPPGPRGQKGDDGIPG----PPGPKGIRGP--PGL 97
Query: 87 RSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQRNPDFAGSSSSGNY 146
+ P H P P Q P + + +PGS P G
Sbjct: 98 PGFPGTPGLPGMPGH-DGAPGP-----QGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGI 151
Query: 147 AGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRINPYADSLGKPD 206
G + P + PG + N +PGP PG +G P
Sbjct: 152 PGMKGEPGSI--IMSSLPGPKGNPGYPGPPGIQGLPGP-----------TGIPGPIGPPG 198
Query: 207 YPGADIQPNSPPFFGEPDYPSAEDNQNL 234
PG PP G P P + N L
Sbjct: 199 PPGL----MGPP--GPPGLPGPKGNMGL 220
Score = 32.3 bits (72), Expect = 2.3
Identities = 50/214 (23%), Positives = 61/214 (28%), Gaps = 45/214 (21%)
Query: 27 QGYLKTQGYPDVPGP-------LNNPDYPGTRSNPYS------------VASRTRPDYPG 67
QG G P +PGP + P PG NP P PG
Sbjct: 637 QGVAGNPGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPG 696
Query: 68 SLAEPNYPRSLSNPDYSGTRSNAYSAASRTSPDHP--TSLPEPDYSEFQSHPYHRASSRQ 125
S EP P + P G + +P P L P P
Sbjct: 697 SKGEPGIP-GIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFAL 755
Query: 126 PDYPGSQRNPDFAGSSSSGNYAGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLNHPGSR 185
P PG P F G+ G R P P PG PGP+ ++ G
Sbjct: 756 PGPPGPPGLPGFKGALGP---KGDRGFPG-----PPGPPGRTGLDGLPGPKGDVGPNGQ- 806
Query: 186 KNLEHTSFRINPYADSLGKPDYPGADIQ-PNSPP 218
+G P PG +Q P PP
Sbjct: 807 -------------PGPMGPPGLPGIGVQGPPGPP 827
Score = 32.0 bits (71), Expect = 3.0
Identities = 57/257 (22%), Positives = 69/257 (26%), Gaps = 37/257 (14%)
Query: 14 PDYPDYSGSQNRTQGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPN 73
P+ P Q G G + GP P +PGT P PG
Sbjct: 67 PEGPPGPRGQKGDDGIPGPPGPKGIRGPPGLPGFPGT------------PGLPGMPGHDG 114
Query: 74 YPRSLSNPDYSGTRSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQR 133
P P +GT+ S P P + P S PG +
Sbjct: 115 APGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEP---GSIIMSSLPGPKG 171
Query: 134 NPDFAGSSSSGNYAGSRTHPDHFGSL-EPDYPGAQSNSDHPGPRAN--LNHPGSRKNLEH 190
NP + G G P G P G PGP+ N LN G +
Sbjct: 172 NPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGE 231
Query: 191 TSFRINP--------------YADSLGKPDYPGADIQPNSPPFFGEPDYPSAE----DNQ 232
+ P G PG P P G P P E Q
Sbjct: 232 QGLQGPPGPPGQISEQKRPIDVEFQKGDQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQ 291
Query: 233 NLPSTWREPDYSDAENG 249
P +P D ENG
Sbjct: 292 GEPGKRGKPG-KDGENG 307
Score = 32.0 bits (71), Expect = 3.0
Identities = 38/171 (22%), Positives = 50/171 (29%), Gaps = 25/171 (14%)
Query: 33 QGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNY--PRSLSNPDYSGTRSNA 90
+G+P +PGP P PGT P +PG EP + P P G +
Sbjct: 715 KGFPGIPGP---PGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGAL 771
Query: 91 YSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQRNPDFAGSSSSG------ 144
R P P P + P + PG P G G
Sbjct: 772 GPKGDRGFPGPPGP---PGRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPG 828
Query: 145 -----------NYAGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLNHPGS 184
G + P G P PG + + PG + PGS
Sbjct: 829 IPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGS 879
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 50.1 bits (118), Expect = 1e-05
Identities = 57/233 (24%), Positives = 79/233 (33%), Gaps = 17/233 (7%)
Query: 14 PDYPDYSGSQN--RTQGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPG---- 67
P P +G+ T+G + G P PGPL P G + +P PG
Sbjct: 880 PGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGE 939
Query: 68 --SLAEPNYPRSLS--NPDYSGTRSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASS 123
S EP P +P+ G++ P P Y P S
Sbjct: 940 KGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGL---PGIPGVSGPKGYQGLPGDPGQPGLS 996
Query: 124 RQPDYPGSQRNPDFAGSSSSGNYAGSRTHPDHFGSL-EPDYPGAQSNSDHPGPRANLNHP 182
QP PG P G+ G P G++ + +PG Q PGP P
Sbjct: 997 GQPGLPGP---PGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQP 1053
Query: 183 GSRKNLEHTSFRINPYADSLGKPDYPGADIQPNSPPFFGEPDYPSAEDNQNLP 235
GS + +P S+G P PG +P P + G P + + LP
Sbjct: 1054 GSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLP 1106
Score = 49.3 bits (116), Expect = 2e-05
Identities = 53/210 (25%), Positives = 60/210 (28%), Gaps = 16/210 (7%)
Query: 34 GYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSLSNPDYSGTRSNAYSA 93
G P +PGP P PG NP S P PG P P + GT
Sbjct: 1074 GLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPK 1133
Query: 94 ASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQRNPDFAGSSSSGNYAGSRTHP 153
P +P EP HP QP PG + P G G P
Sbjct: 1134 GISGPPGNPGLPGEPGPVGGGGHP------GQPGPPGEKGKPGQDGIPGPAGQKGEPGQP 1187
Query: 154 DHFGSLEPDYPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRINPYADS-LGKPDYPGADI 212
P PG G +PG F P G P PG +
Sbjct: 1188 GFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPAL 1247
Query: 213 Q-------PNSPPFFGEPDYPSAEDNQNLP 235
+ P PP G P P E LP
Sbjct: 1248 EGPKGNPGPQGPP--GRPGLPGPEGPPGLP 1275
Score = 42.4 bits (98), Expect = 0.002
Identities = 51/215 (23%), Positives = 71/215 (33%), Gaps = 20/215 (9%)
Query: 17 PDYSGSQNRTQGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPR 76
P +G++ +G+ + G+P + GP P PG + P S+ + P G+ P P
Sbjct: 122 PGCNGTKGE-RGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGPPG 180
Query: 77 SLSNPDYSGTRS--NAYSAASRTSPDHPTSLPEPDYS---EFQSHPYHRASSRQPDYPGS 131
P +G P P LP P + FQ + G
Sbjct: 181 IQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQ------GL 234
Query: 132 QRNPDFAGSSSSGNYAGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLNHPGSRKNLEHT 191
Q P G S R F + PG + PG R PG K +
Sbjct: 235 QGPPGPPGQISE----QKRPIDVEFQKGDQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGE 290
Query: 192 SFRINPYADSLGKPDYPGADIQPNSPPFFGEPDYP 226
GKP G + QP P G+P YP
Sbjct: 291 QGE----PGKRGKPGKDGENGQPGIPGLPGDPGYP 321
Score = 40.0 bits (92), Expect = 0.011
Identities = 51/221 (23%), Positives = 65/221 (29%), Gaps = 33/221 (14%)
Query: 38 VPGPLNNPDYPGTRS-----NPYSVASRTRPDYPGSLAEPNYPRSLSNP------DYSGT 86
+PGP NP YPG P + P P L P P L P ++ G
Sbjct: 166 LPGPKGNPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGP 225
Query: 87 RSNAYSAASRTSPDHPTSLPE---PDYSEFQSHPYHRASSRQPDYPGSQRNPDFAGSSSS 143
+ + P P + E P EFQ R P P R P
Sbjct: 226 KGEKGEQGLQGPPGPPGQISEQKRPIDVEFQKGDQGLPGDRGPPGPPGIRGPPGPPGGEK 285
Query: 144 GNYA-----GSRTHPDHFGSL----------EPDYPGAQSNSDHPGPRANLNHPGSRKNL 188
G G R P G +P YPG G + + PG +
Sbjct: 286 GEKGEQGEPGKRGKPGKDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLV 345
Query: 189 ---EHTSFRINPYADSLGKPDYPGADIQPNSPPFFGEPDYP 226
T I ++G P PG + P G P P
Sbjct: 346 IPRPGTGITIGE-KGNIGLPGLPGEKGERGFPGIQGPPGLP 385
Score = 39.3 bits (90), Expect = 0.019
Identities = 49/204 (24%), Positives = 63/204 (30%), Gaps = 15/204 (7%)
Query: 34 GYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSLSNPDYSGTRSNAYSA 93
G+P PGP PG P + P PG P P P SG + +
Sbjct: 1155 GHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPG-FGNPGPP---GLPGLSGQKGDGGLP 1210
Query: 94 ASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQRNPDFAGSSSSGNYAGSRTHP 153
+P P EP + F P + P PG P G + G P
Sbjct: 1211 GIPGNPGLPGPKGEPGFHGF---PGVQGPPGPPGSPG----PALEGPKGNPGPQGPPGRP 1263
Query: 154 DHFGSLEPDYPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRINPYADSLGKPDYPGADIQ 213
G P PG N G + N PG L P G P PG +
Sbjct: 1264 GLPGPEGP--PGLPGNGGIKGEKGNPGQPGL-PGLPGLKGDQGP-PGLQGNPGRPGLNGM 1319
Query: 214 PNSPPFFGEPDYPSAEDNQNLPST 237
P G P +P + +P +
Sbjct: 1320 KGDPGLPGVPGFPGMKGPSGVPGS 1343
Score = 38.5 bits (88), Expect = 0.032
Identities = 49/202 (24%), Positives = 64/202 (31%), Gaps = 25/202 (12%)
Query: 33 QGYPDVPGPLNN---------PDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSLS---- 79
+G P +PG N P PG P + P +PG+ P P+ +S
Sbjct: 1082 KGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPPG-PKGISGPPG 1140
Query: 80 NPDYSGTRSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDY--PGSQRNPDF 137
NP G P P +P + QP + PG P
Sbjct: 1141 NPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGL 1200
Query: 138 AGSSSSGNYAGSRTHPDHFGSL-EPDYPGAQSNSDHPGPRANLNHPGS-RKNLEHTSFRI 195
+G G G +P G EP + G PGP PGS LE
Sbjct: 1201 SGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGP------PGSPGPALEGPKGNP 1254
Query: 196 NPYADSLGKPDYPGADIQPNSP 217
P G+P PG + P P
Sbjct: 1255 GPQGPP-GRPGLPGPEGPPGLP 1275
Score = 38.1 bits (87), Expect = 0.042
Identities = 52/229 (22%), Positives = 66/229 (28%), Gaps = 22/229 (9%)
Query: 13 DPDYPDYSGSQNRTQGYLKTQGYPDVPGP------LNNPDYPGTRSNPYSVASRTRPDYP 66
DP P G+ +G G+P PGP P PG P V P P
Sbjct: 1102 DPGLPGLPGTPG-AKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQP 1160
Query: 67 GSLAEPNYPRSLSNPDYSGTRSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQP 126
G E P P +G + P P P + P
Sbjct: 1161 GPPGEKGKPGQDGIPGPAGQKG---------EPGQP-GFGNPGPPGLPGLSGQKGDGGLP 1210
Query: 127 DYPGSQRNPDFAGSSSSGNYAGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLNHPGSRK 186
PG+ P G + G + P GS P G + N PGP+ PG
Sbjct: 1211 GIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGN---PGPQGPPGRPGLPG 1267
Query: 187 NLEHTSFRINPYADSLGKPDYPGADIQPNSPPFFGEPDYPSAEDNQNLP 235
N G+ PG P P G+ P + N P
Sbjct: 1268 PEGPPGLPGN--GGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRP 1314
Score = 37.4 bits (85), Expect = 0.071
Identities = 66/311 (21%), Positives = 92/311 (29%), Gaps = 37/311 (11%)
Query: 34 GYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSLSNP----DYSGTRSN 89
G P PG L P G + + + P PG+ P +P S P + G + +
Sbjct: 500 GLPGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGD 559
Query: 90 AYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQRNP---DFAGSSSSGNY 146
S +P P P P PG + P F G
Sbjct: 560 KGELGSPGAPGLP------------GLPGTPGQDGLPGLPGPKGEPGGITFKGERGPPGN 607
Query: 147 AGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRINPYADSLGKPD 206
G P + G + P G G + +PG + + GKP
Sbjct: 608 PGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNPG-QPGIPGPKGDPGQTITQPGKPG 666
Query: 207 YPGADIQPNSPPFFGEPDYPSAEDNQNLPSTWREPDYSDAENGHDYGSSETPKMTRGVLS 266
PG + G+P P +P + EP G PK G+
Sbjct: 667 LPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGEPGIP----GIGLPGPPGPKGFPGIPG 722
Query: 267 RTSSIQPSFRHRSDDPVGSLWGENDYPEGIEMASMEMANSYGHSLPGAPGSGYVNPAYVG 326
+ R + P G P G E G +LPG PG + P + G
Sbjct: 723 PPGAPGTPGRIGLEGPPG--------PPGFPGPKGEP----GFALPGPPGPPGL-PGFKG 769
Query: 327 ESGPVHAYGNP 337
GP G P
Sbjct: 770 ALGPKGDRGFP 780
Score = 33.5 bits (75), Expect = 1.0
Identities = 77/336 (22%), Positives = 103/336 (30%), Gaps = 64/336 (19%)
Query: 33 QGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAE--PNYPRSLSNPDYSGTRSNA 90
+G+P + GP P PG + P +PG + P +S P G
Sbjct: 373 RGFPGIQGPPGLPGPPGAA----VMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQP 428
Query: 91 YSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQRNPDFAGSSSSGNYAGSR 150
A P P P E +P PG +P G G +
Sbjct: 429 -GAPGLPGPPGPAGPHIPPSDEI----------CEPGPPGPPGSPGDKGLQGEQGVKGDK 477
Query: 151 --THPDHFGSLEPDYPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRINPYADSLGKPDYP 208
T + G+ PG PGP +L PG +K + + P G P P
Sbjct: 478 GDTCFNCIGTGISGPPGQPGLPGLPGPPGSLGFPG-QKGEKGQAGATGP----KGLPGIP 532
Query: 209 GADIQPNSPPFFGEP----DYPSAEDNQNLPSTWREPDYSDAENGHDYGSSETPKMTRGV 264
GA P P GEP +P + ++ + GS P +
Sbjct: 533 GAPGAPGFPGSKGEPGDILTFPGMKGDKG-----------------ELGSPGAPGLPG-- 573
Query: 265 LSRTSSIQPSFRHRSDDPVGSLWGENDYPEGIEMASMEMANSYGHSLPGAPGS------- 317
L T D + L G P GI E LPG PG+
Sbjct: 574 LPGTP---------GQDGLPGLPGPKGEPGGITFKG-ERGPPGNPGLPGLPGNIGPMGPP 623
Query: 318 GYVNPAYVGESGPVHAYGNPPLSECDWHKSPQGQKL 353
G+ P VGE G GNP K GQ +
Sbjct: 624 GFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQTI 659
Score = 32.3 bits (72), Expect = 2.3
Identities = 46/208 (22%), Positives = 65/208 (31%), Gaps = 37/208 (17%)
Query: 27 QGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSLSNPDYSGT 86
+G+ +G+P +PG +PG P + PG P P+ + P G
Sbjct: 50 RGFPGLEGHPGLPG------FPGPEGPPGPRGQKGDDGIPG----PPGPKGIRGP--PGL 97
Query: 87 RSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQRNPDFAGSSSSGNY 146
+ P H P P Q P + + +PGS P G
Sbjct: 98 PGFPGTPGLPGMPGH-DGAPGP-----QGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGI 151
Query: 147 AGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRINPYADSLGKPD 206
G + P + PG + N +PGP PG +G P
Sbjct: 152 PGMKGEPGSI--IMSSLPGPKGNPGYPGPPGIQGLPGP-----------TGIPGPIGPPG 198
Query: 207 YPGADIQPNSPPFFGEPDYPSAEDNQNL 234
PG PP G P P + N L
Sbjct: 199 PPGL----MGPP--GPPGLPGPKGNMGL 220
Score = 32.3 bits (72), Expect = 2.3
Identities = 50/214 (23%), Positives = 61/214 (28%), Gaps = 45/214 (21%)
Query: 27 QGYLKTQGYPDVPGP-------LNNPDYPGTRSNPYS------------VASRTRPDYPG 67
QG G P +PGP + P PG NP P PG
Sbjct: 637 QGVAGNPGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPG 696
Query: 68 SLAEPNYPRSLSNPDYSGTRSNAYSAASRTSPDHP--TSLPEPDYSEFQSHPYHRASSRQ 125
S EP P + P G + +P P L P P
Sbjct: 697 SKGEPGIP-GIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFAL 755
Query: 126 PDYPGSQRNPDFAGSSSSGNYAGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLNHPGSR 185
P PG P F G+ G R P P PG PGP+ ++ G
Sbjct: 756 PGPPGPPGLPGFKGALGP---KGDRGFPG-----PPGPPGRTGLDGLPGPKGDVGPNGQ- 806
Query: 186 KNLEHTSFRINPYADSLGKPDYPGADIQ-PNSPP 218
+G P PG +Q P PP
Sbjct: 807 -------------PGPMGPPGLPGIGVQGPPGPP 827
Score = 32.0 bits (71), Expect = 3.0
Identities = 57/257 (22%), Positives = 69/257 (26%), Gaps = 37/257 (14%)
Query: 14 PDYPDYSGSQNRTQGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPN 73
P+ P Q G G + GP P +PGT P PG
Sbjct: 67 PEGPPGPRGQKGDDGIPGPPGPKGIRGPPGLPGFPGT------------PGLPGMPGHDG 114
Query: 74 YPRSLSNPDYSGTRSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQR 133
P P +GT+ S P P + P S PG +
Sbjct: 115 APGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEP---GSIIMSSLPGPKG 171
Query: 134 NPDFAGSSSSGNYAGSRTHPDHFGSL-EPDYPGAQSNSDHPGPRAN--LNHPGSRKNLEH 190
NP + G G P G P G PGP+ N LN G +
Sbjct: 172 NPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGE 231
Query: 191 TSFRINP--------------YADSLGKPDYPGADIQPNSPPFFGEPDYPSAE----DNQ 232
+ P G PG P P G P P E Q
Sbjct: 232 QGLQGPPGPPGQISEQKRPIDVEFQKGDQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQ 291
Query: 233 NLPSTWREPDYSDAENG 249
P +P D ENG
Sbjct: 292 GEPGKRGKPG-KDGENG 307
Score = 32.0 bits (71), Expect = 3.0
Identities = 38/171 (22%), Positives = 50/171 (29%), Gaps = 25/171 (14%)
Query: 33 QGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNY--PRSLSNPDYSGTRSNA 90
+G+P +PGP P PGT P +PG EP + P P G +
Sbjct: 715 KGFPGIPGP---PGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGAL 771
Query: 91 YSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQRNPDFAGSSSSG------ 144
R P P P + P + PG P G G
Sbjct: 772 GPKGDRGFPGPPGP---PGRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPG 828
Query: 145 -----------NYAGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLNHPGS 184
G + P G P PG + + PG + PGS
Sbjct: 829 IPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGS 879
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 50.1 bits (118), Expect = 1e-05
Identities = 57/233 (24%), Positives = 79/233 (33%), Gaps = 17/233 (7%)
Query: 14 PDYPDYSGSQN--RTQGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPG---- 67
P P +G+ T+G + G P PGPL P G + +P PG
Sbjct: 880 PGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGE 939
Query: 68 --SLAEPNYPRSLS--NPDYSGTRSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASS 123
S EP P +P+ G++ P P Y P S
Sbjct: 940 KGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGL---PGIPGVSGPKGYQGLPGDPGQPGLS 996
Query: 124 RQPDYPGSQRNPDFAGSSSSGNYAGSRTHPDHFGSL-EPDYPGAQSNSDHPGPRANLNHP 182
QP PG P G+ G P G++ + +PG Q PGP P
Sbjct: 997 GQPGLPGP---PGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQP 1053
Query: 183 GSRKNLEHTSFRINPYADSLGKPDYPGADIQPNSPPFFGEPDYPSAEDNQNLP 235
GS + +P S+G P PG +P P + G P + + LP
Sbjct: 1054 GSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLP 1106
Score = 45.4 bits (106), Expect = 3e-04
Identities = 53/213 (24%), Positives = 61/213 (28%), Gaps = 19/213 (8%)
Query: 34 GYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSLSNPDYSGTRSNAYSA 93
G P +PGP P PG NP S P PG P P + GT
Sbjct: 1074 GLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPK 1133
Query: 94 ASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQRNPDFAGSSSSGNYAGSRTHP 153
P +P EP HP QP PG + P G G P
Sbjct: 1134 GISGPPGNPGLPGEPGPVGGGGHP------GQPGPPGEKGKPGQDGIPGPAGQKGEPGQP 1187
Query: 154 DHFGSLEPDYPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRINPYADS-LGKPDYPGADI 212
P PG G +PG F P G P PG +
Sbjct: 1188 GFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPAL 1247
Query: 213 Q-------PNSPPFFGEPDY---PSAEDNQNLP 235
+ P PP G P + P E LP
Sbjct: 1248 EGPKGNPGPQGPP--GRPGFQGLPGPEGPPGLP 1278
Score = 42.4 bits (98), Expect = 0.002
Identities = 51/215 (23%), Positives = 71/215 (33%), Gaps = 20/215 (9%)
Query: 17 PDYSGSQNRTQGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPR 76
P +G++ +G+ + G+P + GP P PG + P S+ + P G+ P P
Sbjct: 122 PGCNGTKGE-RGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGPPG 180
Query: 77 SLSNPDYSGTRS--NAYSAASRTSPDHPTSLPEPDYS---EFQSHPYHRASSRQPDYPGS 131
P +G P P LP P + FQ + G
Sbjct: 181 IQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQ------GL 234
Query: 132 QRNPDFAGSSSSGNYAGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLNHPGSRKNLEHT 191
Q P G S R F + PG + PG R PG K +
Sbjct: 235 QGPPGPPGQISE----QKRPIDVEFQKGDQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGE 290
Query: 192 SFRINPYADSLGKPDYPGADIQPNSPPFFGEPDYP 226
GKP G + QP P G+P YP
Sbjct: 291 QGE----PGKRGKPGKDGENGQPGIPGLPGDPGYP 321
Score = 40.0 bits (92), Expect = 0.011
Identities = 51/221 (23%), Positives = 65/221 (29%), Gaps = 33/221 (14%)
Query: 38 VPGPLNNPDYPGTRS-----NPYSVASRTRPDYPGSLAEPNYPRSLSNP------DYSGT 86
+PGP NP YPG P + P P L P P L P ++ G
Sbjct: 166 LPGPKGNPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGP 225
Query: 87 RSNAYSAASRTSPDHPTSLPE---PDYSEFQSHPYHRASSRQPDYPGSQRNPDFAGSSSS 143
+ + P P + E P EFQ R P P R P
Sbjct: 226 KGEKGEQGLQGPPGPPGQISEQKRPIDVEFQKGDQGLPGDRGPPGPPGIRGPPGPPGGEK 285
Query: 144 GNYA-----GSRTHPDHFGSL----------EPDYPGAQSNSDHPGPRANLNHPGSRKNL 188
G G R P G +P YPG G + + PG +
Sbjct: 286 GEKGEQGEPGKRGKPGKDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLV 345
Query: 189 ---EHTSFRINPYADSLGKPDYPGADIQPNSPPFFGEPDYP 226
T I ++G P PG + P G P P
Sbjct: 346 IPRPGTGITIGE-KGNIGLPGLPGEKGERGFPGIQGPPGLP 385
Score = 40.0 bits (92), Expect = 0.011
Identities = 49/205 (23%), Positives = 64/205 (31%), Gaps = 14/205 (6%)
Query: 34 GYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSLSNPDYSGTRSNAYSA 93
G+P PGP PG P + P PG P P P SG + +
Sbjct: 1155 GHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPG-FGNPGPP---GLPGLSGQKGDGGLP 1210
Query: 94 ASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQRNPDFAGSSSSGNYAGSRTHP 153
+P P EP + F P + P PG P G + G P
Sbjct: 1211 GIPGNPGLPGPKGEPGFHGF---PGVQGPPGPPGSPG----PALEGPKGNPGPQGPPGRP 1263
Query: 154 DHFGSLEPDYP-GAQSNSDHPGPRANLNHPGSRKNLEHTSFRINPYADSLGKPDYPGADI 212
G P+ P G N G + N PG L P G P PG +
Sbjct: 1264 GFQGLPGPEGPPGLPGNGGIKGEKGNPGQPGL-PGLPGLKGDQGP-PGLQGNPGRPGLNG 1321
Query: 213 QPNSPPFFGEPDYPSAEDNQNLPST 237
P G P +P + +P +
Sbjct: 1322 MKGDPGLPGVPGFPGMKGPSGVPGS 1346
Score = 38.5 bits (88), Expect = 0.032
Identities = 54/236 (22%), Positives = 71/236 (30%), Gaps = 30/236 (12%)
Query: 13 DPDYPDYSGSQNRTQGYLKTQGYPDVPGP------LNNPDYPGTRSNPYSVASRTRPDYP 66
DP P G+ +G G+P PGP P PG P V P P
Sbjct: 1102 DPGLPGLPGTPG-AKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQP 1160
Query: 67 GSLAEPNYPRSLSNPDYSGTRSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQP 126
G E P P +G + P P P + P
Sbjct: 1161 GPPGEKGKPGQDGIPGPAGQKG---------EPGQP-GFGNPGPPGLPGLSGQKGDGGLP 1210
Query: 127 DYPGSQRNPDFAGSSSSGNYAGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLNHPGSRK 186
PG+ P G + G + P GS P G + N PGP+ PG
Sbjct: 1211 GIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGN---PGPQGPPGRPG--- 1264
Query: 187 NLEHTSFRINPYADS-LGKPDYPGADIQPNSPPFFGEPDYPSAEDNQNLPSTWREP 241
F+ P + G P G + +P G P P + +Q P P
Sbjct: 1265 ------FQGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNP 1314
Score = 37.4 bits (85), Expect = 0.071
Identities = 66/311 (21%), Positives = 92/311 (29%), Gaps = 37/311 (11%)
Query: 34 GYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSLSNP----DYSGTRSN 89
G P PG L P G + + + P PG+ P +P S P + G + +
Sbjct: 500 GLPGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGD 559
Query: 90 AYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQRNP---DFAGSSSSGNY 146
S +P P P P PG + P F G
Sbjct: 560 KGELGSPGAPGLP------------GLPGTPGQDGLPGLPGPKGEPGGITFKGERGPPGN 607
Query: 147 AGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRINPYADSLGKPD 206
G P + G + P G G + +PG + + GKP
Sbjct: 608 PGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNPG-QPGIPGPKGDPGQTITQPGKPG 666
Query: 207 YPGADIQPNSPPFFGEPDYPSAEDNQNLPSTWREPDYSDAENGHDYGSSETPKMTRGVLS 266
PG + G+P P +P + EP G PK G+
Sbjct: 667 LPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGEPGIP----GIGLPGPPGPKGFPGIPG 722
Query: 267 RTSSIQPSFRHRSDDPVGSLWGENDYPEGIEMASMEMANSYGHSLPGAPGSGYVNPAYVG 326
+ R + P G P G E G +LPG PG + P + G
Sbjct: 723 PPGAPGTPGRIGLEGPPG--------PPGFPGPKGEP----GFALPGPPGPPGL-PGFKG 769
Query: 327 ESGPVHAYGNP 337
GP G P
Sbjct: 770 ALGPKGDRGFP 780
Score = 37.0 bits (84), Expect = 0.093
Identities = 49/207 (23%), Positives = 62/207 (29%), Gaps = 35/207 (16%)
Query: 33 QGYPDVPGPLNN---------PDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSLS---- 79
+G P +PG N P PG P + P +PG+ P P+ +S
Sbjct: 1082 KGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPPG-PKGISGPPG 1140
Query: 80 NPDYSGTRSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDY--PGSQRNPDF 137
NP G P P +P + QP + PG P
Sbjct: 1141 NPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGL 1200
Query: 138 AGSSSSGNYAGSRTHPDHFGSL-EPDYPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRIN 196
+G G G +P G EP + G PGP PGS
Sbjct: 1201 SGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGP------PGS------------ 1242
Query: 197 PYADSLGKPDYPGADIQPNSPPFFGEP 223
P G PG P P F G P
Sbjct: 1243 PGPALEGPKGNPGPQGPPGRPGFQGLP 1269
Score = 33.5 bits (75), Expect = 1.0
Identities = 77/336 (22%), Positives = 103/336 (30%), Gaps = 64/336 (19%)
Query: 33 QGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAE--PNYPRSLSNPDYSGTRSNA 90
+G+P + GP P PG + P +PG + P +S P G
Sbjct: 373 RGFPGIQGPPGLPGPPGAA----VMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQP 428
Query: 91 YSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQRNPDFAGSSSSGNYAGSR 150
A P P P E +P PG +P G G +
Sbjct: 429 -GAPGLPGPPGPAGPHIPPSDEI----------CEPGPPGPPGSPGDKGLQGEQGVKGDK 477
Query: 151 --THPDHFGSLEPDYPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRINPYADSLGKPDYP 208
T + G+ PG PGP +L PG +K + + P G P P
Sbjct: 478 GDTCFNCIGTGISGPPGQPGLPGLPGPPGSLGFPG-QKGEKGQAGATGP----KGLPGIP 532
Query: 209 GADIQPNSPPFFGEP----DYPSAEDNQNLPSTWREPDYSDAENGHDYGSSETPKMTRGV 264
GA P P GEP +P + ++ + GS P +
Sbjct: 533 GAPGAPGFPGSKGEPGDILTFPGMKGDKG-----------------ELGSPGAPGLPG-- 573
Query: 265 LSRTSSIQPSFRHRSDDPVGSLWGENDYPEGIEMASMEMANSYGHSLPGAPGS------- 317
L T D + L G P GI E LPG PG+
Sbjct: 574 LPGTP---------GQDGLPGLPGPKGEPGGITFKG-ERGPPGNPGLPGLPGNIGPMGPP 623
Query: 318 GYVNPAYVGESGPVHAYGNPPLSECDWHKSPQGQKL 353
G+ P VGE G GNP K GQ +
Sbjct: 624 GFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQTI 659
Score = 32.3 bits (72), Expect = 2.3
Identities = 46/208 (22%), Positives = 65/208 (31%), Gaps = 37/208 (17%)
Query: 27 QGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSLSNPDYSGT 86
+G+ +G+P +PG +PG P + PG P P+ + P G
Sbjct: 50 RGFPGLEGHPGLPG------FPGPEGPPGPRGQKGDDGIPG----PPGPKGIRGP--PGL 97
Query: 87 RSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQRNPDFAGSSSSGNY 146
+ P H P P Q P + + +PGS P G
Sbjct: 98 PGFPGTPGLPGMPGH-DGAPGP-----QGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGI 151
Query: 147 AGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRINPYADSLGKPD 206
G + P + PG + N +PGP PG +G P
Sbjct: 152 PGMKGEPGSI--IMSSLPGPKGNPGYPGPPGIQGLPGP-----------TGIPGPIGPPG 198
Query: 207 YPGADIQPNSPPFFGEPDYPSAEDNQNL 234
PG PP G P P + N L
Sbjct: 199 PPGL----MGPP--GPPGLPGPKGNMGL 220
Score = 32.3 bits (72), Expect = 2.3
Identities = 50/214 (23%), Positives = 61/214 (28%), Gaps = 45/214 (21%)
Query: 27 QGYLKTQGYPDVPGP-------LNNPDYPGTRSNPYS------------VASRTRPDYPG 67
QG G P +PGP + P PG NP P PG
Sbjct: 637 QGVAGNPGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPG 696
Query: 68 SLAEPNYPRSLSNPDYSGTRSNAYSAASRTSPDHP--TSLPEPDYSEFQSHPYHRASSRQ 125
S EP P + P G + +P P L P P
Sbjct: 697 SKGEPGIP-GIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFAL 755
Query: 126 PDYPGSQRNPDFAGSSSSGNYAGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLNHPGSR 185
P PG P F G+ G R P P PG PGP+ ++ G
Sbjct: 756 PGPPGPPGLPGFKGALGP---KGDRGFPG-----PPGPPGRTGLDGLPGPKGDVGPNGQ- 806
Query: 186 KNLEHTSFRINPYADSLGKPDYPGADIQ-PNSPP 218
+G P PG +Q P PP
Sbjct: 807 -------------PGPMGPPGLPGIGVQGPPGPP 827
Score = 32.0 bits (71), Expect = 3.0
Identities = 57/257 (22%), Positives = 69/257 (26%), Gaps = 37/257 (14%)
Query: 14 PDYPDYSGSQNRTQGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPN 73
P+ P Q G G + GP P +PGT P PG
Sbjct: 67 PEGPPGPRGQKGDDGIPGPPGPKGIRGPPGLPGFPGT------------PGLPGMPGHDG 114
Query: 74 YPRSLSNPDYSGTRSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQR 133
P P +GT+ S P P + P S PG +
Sbjct: 115 APGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEP---GSIIMSSLPGPKG 171
Query: 134 NPDFAGSSSSGNYAGSRTHPDHFGSL-EPDYPGAQSNSDHPGPRAN--LNHPGSRKNLEH 190
NP + G G P G P G PGP+ N LN G +
Sbjct: 172 NPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGE 231
Query: 191 TSFRINP--------------YADSLGKPDYPGADIQPNSPPFFGEPDYPSAE----DNQ 232
+ P G PG P P G P P E Q
Sbjct: 232 QGLQGPPGPPGQISEQKRPIDVEFQKGDQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQ 291
Query: 233 NLPSTWREPDYSDAENG 249
P +P D ENG
Sbjct: 292 GEPGKRGKPG-KDGENG 307
Score = 32.0 bits (71), Expect = 3.0
Identities = 38/171 (22%), Positives = 50/171 (29%), Gaps = 25/171 (14%)
Query: 33 QGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNY--PRSLSNPDYSGTRSNA 90
+G+P +PGP P PGT P +PG EP + P P G +
Sbjct: 715 KGFPGIPGP---PGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGAL 771
Query: 91 YSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQRNPDFAGSSSSG------ 144
R P P P + P + PG P G G
Sbjct: 772 GPKGDRGFPGPPGP---PGRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPG 828
Query: 145 -----------NYAGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLNHPGS 184
G + P G P PG + + PG + PGS
Sbjct: 829 IPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGS 879
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 45.8 bits (107), Expect = 2e-04
Identities = 42/176 (23%), Positives = 60/176 (34%), Gaps = 19/176 (10%)
Query: 14 PDYPDYSGSQNRTQGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPN 73
P P +G + G P PGP +P G P S+ P PG EP
Sbjct: 636 PGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIPGSLGKCGDPGLPGPDGEPG 695
Query: 74 YPRSLSNPDYSGTRSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQR 133
P + P G + + ++ S P + EP +P PG++
Sbjct: 696 IP-GIGFPGPPGPKGDQGFPGTKGSLGCPGKMGEP------------GLPGKPGLPGAKG 742
Query: 134 NPDFA--GSSSSGNYAGSRTHPDHFGSLE----PDYPGAQSNSDHPGPRANLNHPG 183
P A G + + G R + G + P PG N GPR + PG
Sbjct: 743 EPAVAMPGGPGTPGFPGERGNSGEHGEIGLPGLPGLPGTPGNEGLDGPRGDPGQPG 798
Score = 42.0 bits (97), Expect = 0.003
Identities = 66/297 (22%), Positives = 90/297 (30%), Gaps = 36/297 (12%)
Query: 39 PGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSLSNPDYSGTRSNAYSAASRTS 98
PG +P PG + + R P PG L P + + G + +
Sbjct: 852 PGETGSPGIPGHQGEMGPLGQRGYPGNPGILGPPGEDGVIGMMGFPGAIGPPGPPGNPGT 911
Query: 99 PDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQRNPDFAGSSSSGNYAGSRTHPDHFGS 158
P S P + P + PG G G +P G+
Sbjct: 912 PGQRGSPGIPGVKGQRGTPGAKGEQGDKGNPGPSEISHVIGDKGEPGLKGFAGNPGEKGN 971
Query: 159 L-EPDYPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRINP----YADSLGKPDYPGADIQ 213
P PG + PGP PG R +L T P S+G PG+ +
Sbjct: 972 RGVPGMPGLKGLKGLPGP---AGPPGPRGDLGSTGNPGEPGLRGIPGSMGNMGMPGSKGK 1028
Query: 214 PNSPPFFGEPDYPSAEDNQNLPSTWREPDYSDAENGHDYGSSETPKMTRGVLSRTSSIQP 273
+ F G P L EP YS+ G + P + + + QP
Sbjct: 1029 RGTLGFPGRAGRPGLPGIHGLQGDKGEPGYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQP 1088
Query: 274 SFRHRSDDPVGSLWGENDYPEGIEMASMEMANSYGHSLPGAPGSGYVNPAYVGESGP 330
P G L P G E A PG+PGS P G+ GP
Sbjct: 1089 G-------PPGHLG-----PAGPEGA------------PGSPGS----PGLPGKPGP 1117
Score = 40.8 bits (94), Expect = 0.006
Identities = 53/220 (24%), Positives = 67/220 (30%), Gaps = 50/220 (22%)
Query: 14 PDYPDYSGSQNRTQGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPN 73
P +P G+ G + G P +PG N G R +P PG E
Sbjct: 755 PGFPGERGNSGE-HGEIGLPGLPGLPGTPGNEGLDGPRGDPGQPGPPGEQGPPGRCIEG- 812
Query: 74 YPRSLSN-PDYSGTRSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQ 132
PR P +G + +T P +P D S F PG
Sbjct: 813 -PRGAQGLPGLNGLKGQQ-GRRGKTGPKGDPGIPGLDRSGF---------------PGET 855
Query: 133 RNPDFAGSSSSGNYAGSRTHPDHFGSLEP----------DYPGAQSNSDHPGPRANLNHP 182
+P G G R +P + G L P +PGA PGP N P
Sbjct: 856 GSPGIPGHQGEMGPLGQRGYPGNPGILGPPGEDGVIGMMGFPGA---IGPPGPPGNPGTP 912
Query: 183 GSRKNLEHTSFRINPYADSLGKPDYPGADIQPNSPPFFGE 222
G R G P PG Q +P GE
Sbjct: 913 GQR-----------------GSPGIPGVKGQRGTPGAKGE 935
Score = 40.4 bits (93), Expect = 0.008
Identities = 45/188 (23%), Positives = 56/188 (29%), Gaps = 40/188 (21%)
Query: 27 QGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSLSNPDYSGT 86
+G L + G P PG P G P S R +PG P P G
Sbjct: 996 RGDLGSTGNPGEPGLRGIPGSMGNMGMPGSKGKRGTLGFPGRAGRPGLPGIHGLQGDKG- 1054
Query: 87 RSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQRNPDFAGSSSSGNY 146
EP YSE +P PG +P G
Sbjct: 1055 --------------------EPGYSE----------GTRPGPPGPTGDPGLPGDMGKKGE 1084
Query: 147 AGSRTHPDHFGSLEPD----YPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRINPYADSL 202
G P H G P+ PG+ PGP +L G + L R P
Sbjct: 1085 MGQPGPPGHLGPAGPEGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPP----- 1139
Query: 203 GKPDYPGA 210
G P +PG+
Sbjct: 1140 GLPGFPGS 1147
Score = 40.0 bits (92), Expect = 0.011
Identities = 53/220 (24%), Positives = 70/220 (31%), Gaps = 38/220 (17%)
Query: 14 PDYPDYSGSQNRT--QGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAE 71
P P G+ +G +G+P PG L PG N SR P PG
Sbjct: 1200 PGLPGRKGAMGDAGPRGPTGIEGFPGPPG-LPGAIIPGQTGNRGPPGSRGSPGAPGPPGP 1258
Query: 72 PNYPRSLSNPDYSGTRSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGS 131
P G + + + S HP P + P + P PG
Sbjct: 1259 PG-------SHVIGIKGD------KGSMGHPGPKGPPGTAGDMGPPGRLGAPGTPGLPGP 1305
Query: 132 QRNPDFAGSSSSGNYAGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLNHPGSRKNLEHT 191
+ +P F G G + +P GS+ P PG PG R + PG+ K
Sbjct: 1306 RGDPGFQGFPG---VKGEKGNPGFLGSIGP--PGPIGPKGPPGVRGD---PGTLK----- 1352
Query: 192 SFRINPYADSLGKPDYPGADIQPNSPPFFGEPDYPSAEDN 231
+ P PG P P GEP P N
Sbjct: 1353 ---------IISLPGSPGPPGTPGEPGMQGEPGPPGPPGN 1383
Score = 37.7 bits (86), Expect = 0.055
Identities = 64/260 (24%), Positives = 81/260 (31%), Gaps = 39/260 (15%)
Query: 14 PDYPDYSGSQNRTQGYLKTQGYPDVPGPLNNPDYPGTRS------NPYSVASRTRPDYPG 67
P P G + G L TQ P +PGP P PG + + P PG
Sbjct: 460 PGIPGVDGPKGEP-GLLCTQ-CPYIPGPPGLPGLPGLHGVKGIPGRQGAAGLKGSPGSPG 517
Query: 68 SLAEPNYPR---SLSNPDYSGTRSNAYSAASRTS-PDHPTSLPEPDYSEFQSHPYHRASS 123
+ P +P + +P G + + P P +P P
Sbjct: 518 NTGLPGFPGFPGAQGDPGLKGEKGETLQPEGQVGVPGDPGLRGQPGRKGLDGIPGTPGVK 577
Query: 124 RQPD---------YPGSQRNPDFAGSSSSGNYAGSRTHPDHFGSLEPDYPGAQSNSDHP- 173
P G Q P GS S AG P + EP G Q P
Sbjct: 578 GLPGPKGELALSGEKGDQGPPGDPGSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPG 637
Query: 174 -----GPRANLN-------HPGSRKNLEHTSFRINP-YADSLGK---PDYPGADIQPNSP 217
GPR L+ PG H + P SLGK P PG D +P P
Sbjct: 638 PPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIPGSLGKCGDPGLPGPDGEPGIP 697
Query: 218 PFFGEPDYPSAEDNQNLPST 237
G P P + +Q P T
Sbjct: 698 G-IGFPGPPGPKGDQGFPGT 716
Score = 37.0 bits (84), Expect = 0.093
Identities = 51/218 (23%), Positives = 66/218 (30%), Gaps = 49/218 (22%)
Query: 28 GYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSLSNPDYSGTR 87
GYL + G P V GP P T+ PY P PG P
Sbjct: 455 GYLGSPGIPGVDGPKGEPGLLCTQC-PYIPGPPGLPGLPGLHGVKGIP------------ 501
Query: 88 SNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQRNPDFAGSSSS---- 143
+A + SP P + P + P +PG+Q +P G
Sbjct: 502 GRQGAAGLKGSPGSPGNTGLPGF---------------PGFPGAQGDPGLKGEKGETLQP 546
Query: 144 ------GNYAGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRINP 197
G R P G PG PGP+ L G + + P
Sbjct: 547 EGQVGVPGDPGLRGQPGRKGL--DGIPGTPGVKGLPGPKGELALSGEKGDQ-------GP 597
Query: 198 YADSLGKPDYPGADIQPNSPPFFGEPDYPSAEDNQNLP 235
D G P PG P PP +G P + Q +P
Sbjct: 598 PGDP-GSPGSPG-PAGPAGPPGYGPQGEPGLQGTQGVP 633
Score = 35.8 bits (81), Expect = 0.21
Identities = 54/211 (25%), Positives = 71/211 (33%), Gaps = 35/211 (16%)
Query: 28 GYLKTQGYPDV---PGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSLSNPDYS 84
G + G+P PGP NP PG R +P + + PG+ E
Sbjct: 889 GVIGMMGFPGAIGPPGPPGNPGTPGQRGSPGIPGVKGQRGTPGAKGE------------Q 936
Query: 85 GTRSN-AYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYP---GSQRNPDFAGS 140
G + N S S D EP F +P + + P P G + P AG
Sbjct: 937 GDKGNPGPSEISHVIGDK----GEPGLKGFAGNPGEKGNRGVPGMPGLKGLKGLPGPAGP 992
Query: 141 SSSGNYAGSRTHPDHFGSLEPDYPGAQSNSDHP---GPRANLNHPG--SRKNLEHTSFRI 195
GS +P G PG+ N P G R L PG R L I
Sbjct: 993 PGPRGDLGSTGNPGEPGL--RGIPGSMGNMGMPGSKGKRGTLGFPGRAGRPGLP----GI 1046
Query: 196 NPYADSLGKPDYPGADIQPNSPPFFGEPDYP 226
+ G+P Y +P P G+P P
Sbjct: 1047 HGLQGDKGEPGY-SEGTRPGPPGPTGDPGLP 1076
Score = 35.4 bits (80), Expect = 0.27
Identities = 48/200 (24%), Positives = 65/200 (32%), Gaps = 9/200 (4%)
Query: 34 GYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSLSNPDYSGTRSNAYSA 93
G P + GP P +PG+ + R PG E L P G R N +
Sbjct: 1131 GPPGIRGPPGLPGFPGSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAP--PGPRGNPGAQ 1188
Query: 94 ASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQRNPDFAGSSSSGNYA--GSRT 151
++ P P R + +PG P +GN GSR
Sbjct: 1189 GAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPPGSRG 1248
Query: 152 HPDHFGSLEPDYPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRINPYADSLGKPDYPGAD 211
P G+ P P G + ++ HPG K T+ + P LG P PG
Sbjct: 1249 SP---GAPGPPGPPGSHVIGIKGDKGSMGHPGP-KGPPGTAGDMGP-PGRLGAPGTPGLP 1303
Query: 212 IQPNSPPFFGEPDYPSAEDN 231
P F G P + N
Sbjct: 1304 GPRGDPGFQGFPGVKGEKGN 1323
Score = 34.7 bits (78), Expect = 0.46
Identities = 50/213 (23%), Positives = 67/213 (31%), Gaps = 17/213 (7%)
Query: 13 DPDYPDYSGSQNRTQGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAE- 71
+P P SG + G K G P PG P G P S + +PG + E
Sbjct: 269 EPGPPGPSGLPGESYGSEK--GAPGDPGLQGKPGKDGVPGFPGSEGVKGNRGFPGLMGED 326
Query: 72 --PNYPRSLSNPDYSGTRSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYP 129
+ P + G + Y + P P + P P P
Sbjct: 327 GIKGQKGDIGPPGFRGP-TEYYDTYQEKGDEGTPGPPGPRGARGPQGP--SGPPGVPGSP 383
Query: 130 GSQRNPDFAGSSSSGNYAGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLNHPGSRKNLE 189
GS R P G+ GS+ G PG+ + PG + PG ++
Sbjct: 384 GSSR-PGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAGSPGLPGSPGPPGPPGDI- 441
Query: 190 HTSFRINPYADS-----LGKPDYPGADIQPNSP 217
FR P D LG P PG D P
Sbjct: 442 --VFRKGPPGDHGLPGYLGSPGIPGVDGPKGEP 472
Score = 32.7 bits (73), Expect = 1.8
Identities = 23/89 (25%), Positives = 33/89 (37%), Gaps = 5/89 (5%)
Query: 13 DPDYPDYSG--SQNRTQGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLA 70
DP + + G + G+L + G PGP+ PG R +P ++ + P PG
Sbjct: 1308 DPGFQGFPGVKGEKGNPGFLGSIG---PPGPIGPKGPPGVRGDPGTLKIISLPGSPGPPG 1364
Query: 71 EPNYPRSLSNPDYSGTRSNAYSAASRTSP 99
P P P G N R P
Sbjct: 1365 TPGEPGMQGEPGPPGPPGNLGPCGPRGKP 1393
Score = 32.3 bits (72), Expect = 2.3
Identities = 75/351 (21%), Positives = 103/351 (29%), Gaps = 49/351 (13%)
Query: 14 PDYPDYSGSQNRTQGYLKTQGYPDVPGPLNNPDYPGTRSN--PYSVASRTRPDYPGSLAE 71
P P +GS+ +G +PG +P PGT N PY + P GS E
Sbjct: 81 PGLPGLTGSKG-------VRGISGLPGFSGSPGLPGTPGNTGPYGLVGV--PGCSGSKGE 131
Query: 72 PNYPRSLSNPDYSGTRSNAYSAASRTSP--DHPTSLPEPDYSEFQSHPYHRASSRQPDYP 129
+P Y G A + +P + L P + P +P
Sbjct: 132 QGFPGLPGTLGYPGIPGAAGLKGQKGAPAKEEDIELDAKGDPGLPGAPGPQGLPGPPGFP 191
Query: 130 GSQRNPDFAGSSSSGNYAGSRTHPDHFGSLEPDYPGAQSNSDHPGPRA-------NLNHP 182
G P G G R H G + G + GP L P
Sbjct: 192 GPVGPPGPPGFFGFPGAMGPRGPKGHMGERVIGHKGERGVKGLTGPPGPPGTVIVTLTGP 251
Query: 183 GSRKNLEH----------------TSFRINPYADSLGKPDYPGADIQPNSPPFFGEPDYP 226
+R +L+ + Y G P PG +P G P
Sbjct: 252 DNRTDLKGEKGDKGAMGEPGPPGPSGLPGESYGSEKGAPGDPGLQGKPGKDGVPGFPGSE 311
Query: 227 SAEDNQNLPSTWREPDYSDAENGHDYGSSETPKMTRGVLSRTSSIQPSFRHRSDDPVGSL 286
+ N+ P E D + G D G P RG + Q + P G
Sbjct: 312 GVKGNRGFPGLMGE-DGIKGQKG-DIG----PPGFRGPTEYYDTYQEKGDEGTPGPPGPR 365
Query: 287 WGENDYPEGIEMASMEMANSYGHSLPGAPGSGYVNPAYVGESGPVHAYGNP 337
P+G + S G S PG G+ P + G G G P
Sbjct: 366 GARG--PQG-PSGPPGVPGSPGSSRPGLRGA----PGWPGLKGSKGERGRP 409
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 45.8 bits (107), Expect = 2e-04
Identities = 42/176 (23%), Positives = 60/176 (34%), Gaps = 19/176 (10%)
Query: 14 PDYPDYSGSQNRTQGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPN 73
P P +G + G P PGP +P G P S+ P PG EP
Sbjct: 636 PGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIPGSLGKCGDPGLPGPDGEPG 695
Query: 74 YPRSLSNPDYSGTRSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQR 133
P + P G + + ++ S P + EP +P PG++
Sbjct: 696 IP-GIGFPGPPGPKGDQGFPGTKGSLGCPGKMGEP------------GLPGKPGLPGAKG 742
Query: 134 NPDFA--GSSSSGNYAGSRTHPDHFGSLE----PDYPGAQSNSDHPGPRANLNHPG 183
P A G + + G R + G + P PG N GPR + PG
Sbjct: 743 EPAVAMPGGPGTPGFPGERGNSGEHGEIGLPGLPGLPGTPGNEGLDGPRGDPGQPG 798
Score = 42.0 bits (97), Expect = 0.003
Identities = 66/297 (22%), Positives = 90/297 (30%), Gaps = 36/297 (12%)
Query: 39 PGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSLSNPDYSGTRSNAYSAASRTS 98
PG +P PG + + R P PG L P + + G + +
Sbjct: 852 PGETGSPGIPGHQGEMGPLGQRGYPGNPGILGPPGEDGVIGMMGFPGAIGPPGPPGNPGT 911
Query: 99 PDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQRNPDFAGSSSSGNYAGSRTHPDHFGS 158
P S P + P + PG G G +P G+
Sbjct: 912 PGQRGSPGIPGVKGQRGTPGAKGEQGDKGNPGPSEISHVIGDKGEPGLKGFAGNPGEKGN 971
Query: 159 L-EPDYPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRINP----YADSLGKPDYPGADIQ 213
P PG + PGP PG R +L T P S+G PG+ +
Sbjct: 972 RGVPGMPGLKGLKGLPGP---AGPPGPRGDLGSTGNPGEPGLRGIPGSMGNMGMPGSKGK 1028
Query: 214 PNSPPFFGEPDYPSAEDNQNLPSTWREPDYSDAENGHDYGSSETPKMTRGVLSRTSSIQP 273
+ F G P L EP YS+ G + P + + + QP
Sbjct: 1029 RGTLGFPGRAGRPGLPGIHGLQGDKGEPGYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQP 1088
Query: 274 SFRHRSDDPVGSLWGENDYPEGIEMASMEMANSYGHSLPGAPGSGYVNPAYVGESGP 330
P G L P G E A PG+PGS P G+ GP
Sbjct: 1089 G-------PPGHLG-----PAGPEGA------------PGSPGS----PGLPGKPGP 1117
Score = 40.8 bits (94), Expect = 0.006
Identities = 53/220 (24%), Positives = 67/220 (30%), Gaps = 50/220 (22%)
Query: 14 PDYPDYSGSQNRTQGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPN 73
P +P G+ G + G P +PG N G R +P PG E
Sbjct: 755 PGFPGERGNSGE-HGEIGLPGLPGLPGTPGNEGLDGPRGDPGQPGPPGEQGPPGRCIEG- 812
Query: 74 YPRSLSN-PDYSGTRSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQ 132
PR P +G + +T P +P D S F PG
Sbjct: 813 -PRGAQGLPGLNGLKGQQ-GRRGKTGPKGDPGIPGLDRSGF---------------PGET 855
Query: 133 RNPDFAGSSSSGNYAGSRTHPDHFGSLEP----------DYPGAQSNSDHPGPRANLNHP 182
+P G G R +P + G L P +PGA PGP N P
Sbjct: 856 GSPGIPGHQGEMGPLGQRGYPGNPGILGPPGEDGVIGMMGFPGA---IGPPGPPGNPGTP 912
Query: 183 GSRKNLEHTSFRINPYADSLGKPDYPGADIQPNSPPFFGE 222
G R G P PG Q +P GE
Sbjct: 913 GQR-----------------GSPGIPGVKGQRGTPGAKGE 935
Score = 40.4 bits (93), Expect = 0.008
Identities = 45/188 (23%), Positives = 56/188 (29%), Gaps = 40/188 (21%)
Query: 27 QGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSLSNPDYSGT 86
+G L + G P PG P G P S R +PG P P G
Sbjct: 996 RGDLGSTGNPGEPGLRGIPGSMGNMGMPGSKGKRGTLGFPGRAGRPGLPGIHGLQGDKG- 1054
Query: 87 RSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQRNPDFAGSSSSGNY 146
EP YSE +P PG +P G
Sbjct: 1055 --------------------EPGYSE----------GTRPGPPGPTGDPGLPGDMGKKGE 1084
Query: 147 AGSRTHPDHFGSLEPD----YPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRINPYADSL 202
G P H G P+ PG+ PGP +L G + L R P
Sbjct: 1085 MGQPGPPGHLGPAGPEGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPP----- 1139
Query: 203 GKPDYPGA 210
G P +PG+
Sbjct: 1140 GLPGFPGS 1147
Score = 37.7 bits (86), Expect = 0.055
Identities = 64/260 (24%), Positives = 81/260 (31%), Gaps = 39/260 (15%)
Query: 14 PDYPDYSGSQNRTQGYLKTQGYPDVPGPLNNPDYPGTRS------NPYSVASRTRPDYPG 67
P P G + G L TQ P +PGP P PG + + P PG
Sbjct: 460 PGIPGVDGPKGEP-GLLCTQ-CPYIPGPPGLPGLPGLHGVKGIPGRQGAAGLKGSPGSPG 517
Query: 68 SLAEPNYPR---SLSNPDYSGTRSNAYSAASRTS-PDHPTSLPEPDYSEFQSHPYHRASS 123
+ P +P + +P G + + P P +P P
Sbjct: 518 NTGLPGFPGFPGAQGDPGLKGEKGETLQPEGQVGVPGDPGLRGQPGRKGLDGIPGTPGVK 577
Query: 124 RQPD---------YPGSQRNPDFAGSSSSGNYAGSRTHPDHFGSLEPDYPGAQSNSDHP- 173
P G Q P GS S AG P + EP G Q P
Sbjct: 578 GLPGPKGELALSGEKGDQGPPGDPGSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPG 637
Query: 174 -----GPRANLN-------HPGSRKNLEHTSFRINP-YADSLGK---PDYPGADIQPNSP 217
GPR L+ PG H + P SLGK P PG D +P P
Sbjct: 638 PPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIPGSLGKCGDPGLPGPDGEPGIP 697
Query: 218 PFFGEPDYPSAEDNQNLPST 237
G P P + +Q P T
Sbjct: 698 G-IGFPGPPGPKGDQGFPGT 716
Score = 37.0 bits (84), Expect = 0.093
Identities = 51/218 (23%), Positives = 66/218 (30%), Gaps = 49/218 (22%)
Query: 28 GYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSLSNPDYSGTR 87
GYL + G P V GP P T+ PY P PG P
Sbjct: 455 GYLGSPGIPGVDGPKGEPGLLCTQC-PYIPGPPGLPGLPGLHGVKGIP------------ 501
Query: 88 SNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQRNPDFAGSSSS---- 143
+A + SP P + P + P +PG+Q +P G
Sbjct: 502 GRQGAAGLKGSPGSPGNTGLPGF---------------PGFPGAQGDPGLKGEKGETLQP 546
Query: 144 ------GNYAGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRINP 197
G R P G PG PGP+ L G + + P
Sbjct: 547 EGQVGVPGDPGLRGQPGRKGL--DGIPGTPGVKGLPGPKGELALSGEKGDQ-------GP 597
Query: 198 YADSLGKPDYPGADIQPNSPPFFGEPDYPSAEDNQNLP 235
D G P PG P PP +G P + Q +P
Sbjct: 598 PGDP-GSPGSPG-PAGPAGPPGYGPQGEPGLQGTQGVP 633
Score = 37.0 bits (84), Expect = 0.093
Identities = 61/267 (22%), Positives = 78/267 (29%), Gaps = 67/267 (25%)
Query: 14 PDYPDYSGSQNRT--QGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAE 71
P P G+ +G +G+P PG L PG N SR P PG
Sbjct: 1200 PGLPGRKGAMGDAGPRGPTGIEGFPGPPG-LPGAIIPGQTGNRGPPGSRGSPGAPGPPGP 1258
Query: 72 PN--------------YPRSLSNPDYSGTRSNAYSAASRTSPDHPTSLPEPDYSEFQSHP 117
P +P P +G + +P P +P + F
Sbjct: 1259 PGSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGRLGAPGTPGLPGPRGDPGFQGF---- 1314
Query: 118 YHRASSRQPDYPGSQRNPDFAGSSSSGNYAGSRTHPDHFGSL----------------EP 161
P G + NP F GS G + P G P
Sbjct: 1315 --------PGVKGEKGNPGFLGSIGPPGPIGPKGPPGVRGDPGTLKIISLPGSPGPPGTP 1366
Query: 162 DYPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRINPYADSLGKPDYPGADIQPNSPPFFG 221
PG Q PGP NL G R P D GKP PG + + G
Sbjct: 1367 GEPGMQGEPGPPGPPGNLGPCGPRG---------KPGKD--GKPGTPGPAGEKGNKGSKG 1415
Query: 222 EPDYPSAED----------NQNLPSTW 238
EP P+ D + P+TW
Sbjct: 1416 EPG-PAGSDGLPGLKGKRGDSGSPATW 1441
Score = 35.8 bits (81), Expect = 0.21
Identities = 54/211 (25%), Positives = 71/211 (33%), Gaps = 35/211 (16%)
Query: 28 GYLKTQGYPDV---PGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSLSNPDYS 84
G + G+P PGP NP PG R +P + + PG+ E
Sbjct: 889 GVIGMMGFPGAIGPPGPPGNPGTPGQRGSPGIPGVKGQRGTPGAKGE------------Q 936
Query: 85 GTRSN-AYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYP---GSQRNPDFAGS 140
G + N S S D EP F +P + + P P G + P AG
Sbjct: 937 GDKGNPGPSEISHVIGDK----GEPGLKGFAGNPGEKGNRGVPGMPGLKGLKGLPGPAGP 992
Query: 141 SSSGNYAGSRTHPDHFGSLEPDYPGAQSNSDHP---GPRANLNHPG--SRKNLEHTSFRI 195
GS +P G PG+ N P G R L PG R L I
Sbjct: 993 PGPRGDLGSTGNPGEPGL--RGIPGSMGNMGMPGSKGKRGTLGFPGRAGRPGLP----GI 1046
Query: 196 NPYADSLGKPDYPGADIQPNSPPFFGEPDYP 226
+ G+P Y +P P G+P P
Sbjct: 1047 HGLQGDKGEPGY-SEGTRPGPPGPTGDPGLP 1076
Score = 35.4 bits (80), Expect = 0.27
Identities = 48/200 (24%), Positives = 65/200 (32%), Gaps = 9/200 (4%)
Query: 34 GYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSLSNPDYSGTRSNAYSA 93
G P + GP P +PG+ + R PG E L P G R N +
Sbjct: 1131 GPPGIRGPPGLPGFPGSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAP--PGPRGNPGAQ 1188
Query: 94 ASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQRNPDFAGSSSSGNYA--GSRT 151
++ P P R + +PG P +GN GSR
Sbjct: 1189 GAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPPGSRG 1248
Query: 152 HPDHFGSLEPDYPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRINPYADSLGKPDYPGAD 211
P G+ P P G + ++ HPG K T+ + P LG P PG
Sbjct: 1249 SP---GAPGPPGPPGSHVIGIKGDKGSMGHPGP-KGPPGTAGDMGP-PGRLGAPGTPGLP 1303
Query: 212 IQPNSPPFFGEPDYPSAEDN 231
P F G P + N
Sbjct: 1304 GPRGDPGFQGFPGVKGEKGN 1323
Score = 34.7 bits (78), Expect = 0.46
Identities = 50/213 (23%), Positives = 67/213 (31%), Gaps = 17/213 (7%)
Query: 13 DPDYPDYSGSQNRTQGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAE- 71
+P P SG + G K G P PG P G P S + +PG + E
Sbjct: 269 EPGPPGPSGLPGESYGSEK--GAPGDPGLQGKPGKDGVPGFPGSEGVKGNRGFPGLMGED 326
Query: 72 --PNYPRSLSNPDYSGTRSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYP 129
+ P + G + Y + P P + P P P
Sbjct: 327 GIKGQKGDIGPPGFRGP-TEYYDTYQEKGDEGTPGPPGPRGARGPQGP--SGPPGVPGSP 383
Query: 130 GSQRNPDFAGSSSSGNYAGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLNHPGSRKNLE 189
GS R P G+ GS+ G PG+ + PG + PG ++
Sbjct: 384 GSSR-PGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAGSPGLPGSPGPPGPPGDI- 441
Query: 190 HTSFRINPYADS-----LGKPDYPGADIQPNSP 217
FR P D LG P PG D P
Sbjct: 442 --VFRKGPPGDHGLPGYLGSPGIPGVDGPKGEP 472
Score = 34.3 bits (77), Expect = 0.61
Identities = 32/131 (24%), Positives = 45/131 (34%), Gaps = 12/131 (9%)
Query: 13 DPDYPDYSG--SQNRTQGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLA 70
DP + + G + G+L + G PGP+ PG R +P ++ + P PG
Sbjct: 1308 DPGFQGFPGVKGEKGNPGFLGSIG---PPGPIGPKGPPGVRGDPGTLKIISLPGSPGPPG 1364
Query: 71 EPNYPRSLSNPDYSGTRSNAYSAASRTSP--DHPTSLPEPDYSEFQSHPYHRASSRQPDY 128
P P P G N R P D P P ++ S +P
Sbjct: 1365 TPGEPGMQGEPGPPGPPGNLGPCGPRGKPGKDGKPGTPGP-----AGEKGNKGSKGEPGP 1419
Query: 129 PGSQRNPDFAG 139
GS P G
Sbjct: 1420 AGSDGLPGLKG 1430
Score = 32.3 bits (72), Expect = 2.3
Identities = 75/351 (21%), Positives = 103/351 (29%), Gaps = 49/351 (13%)
Query: 14 PDYPDYSGSQNRTQGYLKTQGYPDVPGPLNNPDYPGTRSN--PYSVASRTRPDYPGSLAE 71
P P +GS+ +G +PG +P PGT N PY + P GS E
Sbjct: 81 PGLPGLTGSKG-------VRGISGLPGFSGSPGLPGTPGNTGPYGLVGV--PGCSGSKGE 131
Query: 72 PNYPRSLSNPDYSGTRSNAYSAASRTSP--DHPTSLPEPDYSEFQSHPYHRASSRQPDYP 129
+P Y G A + +P + L P + P +P
Sbjct: 132 QGFPGLPGTLGYPGIPGAAGLKGQKGAPAKEEDIELDAKGDPGLPGAPGPQGLPGPPGFP 191
Query: 130 GSQRNPDFAGSSSSGNYAGSRTHPDHFGSLEPDYPGAQSNSDHPGPRA-------NLNHP 182
G P G G R H G + G + GP L P
Sbjct: 192 GPVGPPGPPGFFGFPGAMGPRGPKGHMGERVIGHKGERGVKGLTGPPGPPGTVIVTLTGP 251
Query: 183 GSRKNLEH----------------TSFRINPYADSLGKPDYPGADIQPNSPPFFGEPDYP 226
+R +L+ + Y G P PG +P G P
Sbjct: 252 DNRTDLKGEKGDKGAMGEPGPPGPSGLPGESYGSEKGAPGDPGLQGKPGKDGVPGFPGSE 311
Query: 227 SAEDNQNLPSTWREPDYSDAENGHDYGSSETPKMTRGVLSRTSSIQPSFRHRSDDPVGSL 286
+ N+ P E D + G D G P RG + Q + P G
Sbjct: 312 GVKGNRGFPGLMGE-DGIKGQKG-DIG----PPGFRGPTEYYDTYQEKGDEGTPGPPGPR 365
Query: 287 WGENDYPEGIEMASMEMANSYGHSLPGAPGSGYVNPAYVGESGPVHAYGNP 337
P+G + S G S PG G+ P + G G G P
Sbjct: 366 GARG--PQG-PSGPPGVPGSPGSSRPGLRGA----PGWPGLKGSKGERGRP 409
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 45.8 bits (107), Expect = 2e-04
Identities = 42/176 (23%), Positives = 60/176 (34%), Gaps = 19/176 (10%)
Query: 14 PDYPDYSGSQNRTQGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPN 73
P P +G + G P PGP +P G P S+ P PG EP
Sbjct: 636 PGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIPGSLGKCGDPGLPGPDGEPG 695
Query: 74 YPRSLSNPDYSGTRSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQR 133
P + P G + + ++ S P + EP +P PG++
Sbjct: 696 IP-GIGFPGPPGPKGDQGFPGTKGSLGCPGKMGEP------------GLPGKPGLPGAKG 742
Query: 134 NPDFA--GSSSSGNYAGSRTHPDHFGSLE----PDYPGAQSNSDHPGPRANLNHPG 183
P A G + + G R + G + P PG N GPR + PG
Sbjct: 743 EPAVAMPGGPGTPGFPGERGNSGEHGEIGLPGLPGLPGTPGNEGLDGPRGDPGQPG 798
Score = 42.0 bits (97), Expect = 0.003
Identities = 66/297 (22%), Positives = 90/297 (30%), Gaps = 36/297 (12%)
Query: 39 PGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSLSNPDYSGTRSNAYSAASRTS 98
PG +P PG + + R P PG L P + + G + +
Sbjct: 852 PGETGSPGIPGHQGEMGPLGQRGYPGNPGILGPPGEDGVIGMMGFPGAIGPPGPPGNPGT 911
Query: 99 PDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQRNPDFAGSSSSGNYAGSRTHPDHFGS 158
P S P + P + PG G G +P G+
Sbjct: 912 PGQRGSPGIPGVKGQRGTPGAKGEQGDKGNPGPSEISHVIGDKGEPGLKGFAGNPGEKGN 971
Query: 159 L-EPDYPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRINP----YADSLGKPDYPGADIQ 213
P PG + PGP PG R +L T P S+G PG+ +
Sbjct: 972 RGVPGMPGLKGLKGLPGP---AGPPGPRGDLGSTGNPGEPGLRGIPGSMGNMGMPGSKGK 1028
Query: 214 PNSPPFFGEPDYPSAEDNQNLPSTWREPDYSDAENGHDYGSSETPKMTRGVLSRTSSIQP 273
+ F G P L EP YS+ G + P + + + QP
Sbjct: 1029 RGTLGFPGRAGRPGLPGIHGLQGDKGEPGYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQP 1088
Query: 274 SFRHRSDDPVGSLWGENDYPEGIEMASMEMANSYGHSLPGAPGSGYVNPAYVGESGP 330
P G L P G E A PG+PGS P G+ GP
Sbjct: 1089 G-------PPGHLG-----PAGPEGA------------PGSPGS----PGLPGKPGP 1117
Score = 40.8 bits (94), Expect = 0.006
Identities = 53/220 (24%), Positives = 67/220 (30%), Gaps = 50/220 (22%)
Query: 14 PDYPDYSGSQNRTQGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPN 73
P +P G+ G + G P +PG N G R +P PG E
Sbjct: 755 PGFPGERGNSGE-HGEIGLPGLPGLPGTPGNEGLDGPRGDPGQPGPPGEQGPPGRCIEG- 812
Query: 74 YPRSLSN-PDYSGTRSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQ 132
PR P +G + +T P +P D S F PG
Sbjct: 813 -PRGAQGLPGLNGLKGQQ-GRRGKTGPKGDPGIPGLDRSGF---------------PGET 855
Query: 133 RNPDFAGSSSSGNYAGSRTHPDHFGSLEP----------DYPGAQSNSDHPGPRANLNHP 182
+P G G R +P + G L P +PGA PGP N P
Sbjct: 856 GSPGIPGHQGEMGPLGQRGYPGNPGILGPPGEDGVIGMMGFPGA---IGPPGPPGNPGTP 912
Query: 183 GSRKNLEHTSFRINPYADSLGKPDYPGADIQPNSPPFFGE 222
G R G P PG Q +P GE
Sbjct: 913 GQR-----------------GSPGIPGVKGQRGTPGAKGE 935
Score = 40.4 bits (93), Expect = 0.008
Identities = 45/188 (23%), Positives = 56/188 (29%), Gaps = 40/188 (21%)
Query: 27 QGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSLSNPDYSGT 86
+G L + G P PG P G P S R +PG P P G
Sbjct: 996 RGDLGSTGNPGEPGLRGIPGSMGNMGMPGSKGKRGTLGFPGRAGRPGLPGIHGLQGDKG- 1054
Query: 87 RSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQRNPDFAGSSSSGNY 146
EP YSE +P PG +P G
Sbjct: 1055 --------------------EPGYSE----------GTRPGPPGPTGDPGLPGDMGKKGE 1084
Query: 147 AGSRTHPDHFGSLEPD----YPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRINPYADSL 202
G P H G P+ PG+ PGP +L G + L R P
Sbjct: 1085 MGQPGPPGHLGPAGPEGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPP----- 1139
Query: 203 GKPDYPGA 210
G P +PG+
Sbjct: 1140 GLPGFPGS 1147
Score = 37.7 bits (86), Expect = 0.055
Identities = 64/260 (24%), Positives = 81/260 (31%), Gaps = 39/260 (15%)
Query: 14 PDYPDYSGSQNRTQGYLKTQGYPDVPGPLNNPDYPGTRS------NPYSVASRTRPDYPG 67
P P G + G L TQ P +PGP P PG + + P PG
Sbjct: 460 PGIPGVDGPKGEP-GLLCTQ-CPYIPGPPGLPGLPGLHGVKGIPGRQGAAGLKGSPGSPG 517
Query: 68 SLAEPNYPR---SLSNPDYSGTRSNAYSAASRTS-PDHPTSLPEPDYSEFQSHPYHRASS 123
+ P +P + +P G + + P P +P P
Sbjct: 518 NTGLPGFPGFPGAQGDPGLKGEKGETLQPEGQVGVPGDPGLRGQPGRKGLDGIPGTPGVK 577
Query: 124 RQPD---------YPGSQRNPDFAGSSSSGNYAGSRTHPDHFGSLEPDYPGAQSNSDHP- 173
P G Q P GS S AG P + EP G Q P
Sbjct: 578 GLPGPKGELALSGEKGDQGPPGDPGSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPG 637
Query: 174 -----GPRANLN-------HPGSRKNLEHTSFRINP-YADSLGK---PDYPGADIQPNSP 217
GPR L+ PG H + P SLGK P PG D +P P
Sbjct: 638 PPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIPGSLGKCGDPGLPGPDGEPGIP 697
Query: 218 PFFGEPDYPSAEDNQNLPST 237
G P P + +Q P T
Sbjct: 698 G-IGFPGPPGPKGDQGFPGT 716
Score = 37.0 bits (84), Expect = 0.093
Identities = 51/218 (23%), Positives = 66/218 (30%), Gaps = 49/218 (22%)
Query: 28 GYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSLSNPDYSGTR 87
GYL + G P V GP P T+ PY P PG P
Sbjct: 455 GYLGSPGIPGVDGPKGEPGLLCTQC-PYIPGPPGLPGLPGLHGVKGIP------------ 501
Query: 88 SNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQRNPDFAGSSSS---- 143
+A + SP P + P + P +PG+Q +P G
Sbjct: 502 GRQGAAGLKGSPGSPGNTGLPGF---------------PGFPGAQGDPGLKGEKGETLQP 546
Query: 144 ------GNYAGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRINP 197
G R P G PG PGP+ L G + + P
Sbjct: 547 EGQVGVPGDPGLRGQPGRKGL--DGIPGTPGVKGLPGPKGELALSGEKGDQ-------GP 597
Query: 198 YADSLGKPDYPGADIQPNSPPFFGEPDYPSAEDNQNLP 235
D G P PG P PP +G P + Q +P
Sbjct: 598 PGDP-GSPGSPG-PAGPAGPPGYGPQGEPGLQGTQGVP 633
Score = 37.0 bits (84), Expect = 0.093
Identities = 61/267 (22%), Positives = 78/267 (29%), Gaps = 67/267 (25%)
Query: 14 PDYPDYSGSQNRT--QGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAE 71
P P G+ +G +G+P PG L PG N SR P PG
Sbjct: 1200 PGLPGRKGAMGDAGPRGPTGIEGFPGPPG-LPGAIIPGQTGNRGPPGSRGSPGAPGPPGP 1258
Query: 72 PN--------------YPRSLSNPDYSGTRSNAYSAASRTSPDHPTSLPEPDYSEFQSHP 117
P +P P +G + +P P +P + F
Sbjct: 1259 PGSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGRLGAPGTPGLPGPRGDPGFQGF---- 1314
Query: 118 YHRASSRQPDYPGSQRNPDFAGSSSSGNYAGSRTHPDHFGSL----------------EP 161
P G + NP F GS G + P G P
Sbjct: 1315 --------PGVKGEKGNPGFLGSIGPPGPIGPKGPPGVRGDPGTLKIISLPGSPGPPGTP 1366
Query: 162 DYPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRINPYADSLGKPDYPGADIQPNSPPFFG 221
PG Q PGP NL G R P D GKP PG + + G
Sbjct: 1367 GEPGMQGEPGPPGPPGNLGPCGPRG---------KPGKD--GKPGTPGPAGEKGNKGSKG 1415
Query: 222 EPDYPSAED----------NQNLPSTW 238
EP P+ D + P+TW
Sbjct: 1416 EPG-PAGSDGLPGLKGKRGDSGSPATW 1441
Score = 35.8 bits (81), Expect = 0.21
Identities = 54/211 (25%), Positives = 71/211 (33%), Gaps = 35/211 (16%)
Query: 28 GYLKTQGYPDV---PGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSLSNPDYS 84
G + G+P PGP NP PG R +P + + PG+ E
Sbjct: 889 GVIGMMGFPGAIGPPGPPGNPGTPGQRGSPGIPGVKGQRGTPGAKGE------------Q 936
Query: 85 GTRSN-AYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYP---GSQRNPDFAGS 140
G + N S S D EP F +P + + P P G + P AG
Sbjct: 937 GDKGNPGPSEISHVIGDK----GEPGLKGFAGNPGEKGNRGVPGMPGLKGLKGLPGPAGP 992
Query: 141 SSSGNYAGSRTHPDHFGSLEPDYPGAQSNSDHP---GPRANLNHPG--SRKNLEHTSFRI 195
GS +P G PG+ N P G R L PG R L I
Sbjct: 993 PGPRGDLGSTGNPGEPGL--RGIPGSMGNMGMPGSKGKRGTLGFPGRAGRPGLP----GI 1046
Query: 196 NPYADSLGKPDYPGADIQPNSPPFFGEPDYP 226
+ G+P Y +P P G+P P
Sbjct: 1047 HGLQGDKGEPGY-SEGTRPGPPGPTGDPGLP 1076
Score = 35.4 bits (80), Expect = 0.27
Identities = 48/200 (24%), Positives = 65/200 (32%), Gaps = 9/200 (4%)
Query: 34 GYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSLSNPDYSGTRSNAYSA 93
G P + GP P +PG+ + R PG E L P G R N +
Sbjct: 1131 GPPGIRGPPGLPGFPGSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAP--PGPRGNPGAQ 1188
Query: 94 ASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQRNPDFAGSSSSGNYA--GSRT 151
++ P P R + +PG P +GN GSR
Sbjct: 1189 GAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPPGSRG 1248
Query: 152 HPDHFGSLEPDYPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRINPYADSLGKPDYPGAD 211
P G+ P P G + ++ HPG K T+ + P LG P PG
Sbjct: 1249 SP---GAPGPPGPPGSHVIGIKGDKGSMGHPGP-KGPPGTAGDMGP-PGRLGAPGTPGLP 1303
Query: 212 IQPNSPPFFGEPDYPSAEDN 231
P F G P + N
Sbjct: 1304 GPRGDPGFQGFPGVKGEKGN 1323
Score = 34.7 bits (78), Expect = 0.46
Identities = 50/213 (23%), Positives = 67/213 (31%), Gaps = 17/213 (7%)
Query: 13 DPDYPDYSGSQNRTQGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAE- 71
+P P SG + G K G P PG P G P S + +PG + E
Sbjct: 269 EPGPPGPSGLPGESYGSEK--GAPGDPGLQGKPGKDGVPGFPGSEGVKGNRGFPGLMGED 326
Query: 72 --PNYPRSLSNPDYSGTRSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYP 129
+ P + G + Y + P P + P P P
Sbjct: 327 GIKGQKGDIGPPGFRGP-TEYYDTYQEKGDEGTPGPPGPRGARGPQGP--SGPPGVPGSP 383
Query: 130 GSQRNPDFAGSSSSGNYAGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLNHPGSRKNLE 189
GS R P G+ GS+ G PG+ + PG + PG ++
Sbjct: 384 GSSR-PGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAGSPGLPGSPGPPGPPGDI- 441
Query: 190 HTSFRINPYADS-----LGKPDYPGADIQPNSP 217
FR P D LG P PG D P
Sbjct: 442 --VFRKGPPGDHGLPGYLGSPGIPGVDGPKGEP 472
Score = 34.3 bits (77), Expect = 0.61
Identities = 32/131 (24%), Positives = 45/131 (34%), Gaps = 12/131 (9%)
Query: 13 DPDYPDYSG--SQNRTQGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLA 70
DP + + G + G+L + G PGP+ PG R +P ++ + P PG
Sbjct: 1308 DPGFQGFPGVKGEKGNPGFLGSIG---PPGPIGPKGPPGVRGDPGTLKIISLPGSPGPPG 1364
Query: 71 EPNYPRSLSNPDYSGTRSNAYSAASRTSP--DHPTSLPEPDYSEFQSHPYHRASSRQPDY 128
P P P G N R P D P P ++ S +P
Sbjct: 1365 TPGEPGMQGEPGPPGPPGNLGPCGPRGKPGKDGKPGTPGP-----AGEKGNKGSKGEPGP 1419
Query: 129 PGSQRNPDFAG 139
GS P G
Sbjct: 1420 AGSDGLPGLKG 1430
Score = 32.3 bits (72), Expect = 2.3
Identities = 75/351 (21%), Positives = 103/351 (29%), Gaps = 49/351 (13%)
Query: 14 PDYPDYSGSQNRTQGYLKTQGYPDVPGPLNNPDYPGTRSN--PYSVASRTRPDYPGSLAE 71
P P +GS+ +G +PG +P PGT N PY + P GS E
Sbjct: 81 PGLPGLTGSKG-------VRGISGLPGFSGSPGLPGTPGNTGPYGLVGV--PGCSGSKGE 131
Query: 72 PNYPRSLSNPDYSGTRSNAYSAASRTSP--DHPTSLPEPDYSEFQSHPYHRASSRQPDYP 129
+P Y G A + +P + L P + P +P
Sbjct: 132 QGFPGLPGTLGYPGIPGAAGLKGQKGAPAKEEDIELDAKGDPGLPGAPGPQGLPGPPGFP 191
Query: 130 GSQRNPDFAGSSSSGNYAGSRTHPDHFGSLEPDYPGAQSNSDHPGPRA-------NLNHP 182
G P G G R H G + G + GP L P
Sbjct: 192 GPVGPPGPPGFFGFPGAMGPRGPKGHMGERVIGHKGERGVKGLTGPPGPPGTVIVTLTGP 251
Query: 183 GSRKNLEH----------------TSFRINPYADSLGKPDYPGADIQPNSPPFFGEPDYP 226
+R +L+ + Y G P PG +P G P
Sbjct: 252 DNRTDLKGEKGDKGAMGEPGPPGPSGLPGESYGSEKGAPGDPGLQGKPGKDGVPGFPGSE 311
Query: 227 SAEDNQNLPSTWREPDYSDAENGHDYGSSETPKMTRGVLSRTSSIQPSFRHRSDDPVGSL 286
+ N+ P E D + G D G P RG + Q + P G
Sbjct: 312 GVKGNRGFPGLMGE-DGIKGQKG-DIG----PPGFRGPTEYYDTYQEKGDEGTPGPPGPR 365
Query: 287 WGENDYPEGIEMASMEMANSYGHSLPGAPGSGYVNPAYVGESGPVHAYGNP 337
P+G + S G S PG G+ P + G G G P
Sbjct: 366 GARG--PQG-PSGPPGVPGSPGSSRPGLRGA----PGWPGLKGSKGERGRP 409
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 45.8 bits (107), Expect = 2e-04
Identities = 42/176 (23%), Positives = 60/176 (34%), Gaps = 19/176 (10%)
Query: 14 PDYPDYSGSQNRTQGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPN 73
P P +G + G P PGP +P G P S+ P PG EP
Sbjct: 636 PGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIPGSLGKCGDPGLPGPDGEPG 695
Query: 74 YPRSLSNPDYSGTRSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQR 133
P + P G + + ++ S P + EP +P PG++
Sbjct: 696 IP-GIGFPGPPGPKGDQGFPGTKGSLGCPGKMGEP------------GLPGKPGLPGAKG 742
Query: 134 NPDFA--GSSSSGNYAGSRTHPDHFGSLE----PDYPGAQSNSDHPGPRANLNHPG 183
P A G + + G R + G + P PG N GPR + PG
Sbjct: 743 EPAVAMPGGPGTPGFPGERGNSGEHGEIGLPGLPGLPGTPGNEGLDGPRGDPGQPG 798
Score = 42.0 bits (97), Expect = 0.003
Identities = 66/297 (22%), Positives = 90/297 (30%), Gaps = 36/297 (12%)
Query: 39 PGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSLSNPDYSGTRSNAYSAASRTS 98
PG +P PG + + R P PG L P + + G + +
Sbjct: 852 PGETGSPGIPGHQGEMGPLGQRGYPGNPGILGPPGEDGVIGMMGFPGAIGPPGPPGNPGT 911
Query: 99 PDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQRNPDFAGSSSSGNYAGSRTHPDHFGS 158
P S P + P + PG G G +P G+
Sbjct: 912 PGQRGSPGIPGVKGQRGTPGAKGEQGDKGNPGPSEISHVIGDKGEPGLKGFAGNPGEKGN 971
Query: 159 L-EPDYPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRINP----YADSLGKPDYPGADIQ 213
P PG + PGP PG R +L T P S+G PG+ +
Sbjct: 972 RGVPGMPGLKGLKGLPGP---AGPPGPRGDLGSTGNPGEPGLRGIPGSMGNMGMPGSKGK 1028
Query: 214 PNSPPFFGEPDYPSAEDNQNLPSTWREPDYSDAENGHDYGSSETPKMTRGVLSRTSSIQP 273
+ F G P L EP YS+ G + P + + + QP
Sbjct: 1029 RGTLGFPGRAGRPGLPGIHGLQGDKGEPGYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQP 1088
Query: 274 SFRHRSDDPVGSLWGENDYPEGIEMASMEMANSYGHSLPGAPGSGYVNPAYVGESGP 330
P G L P G E A PG+PGS P G+ GP
Sbjct: 1089 G-------PPGHLG-----PAGPEGA------------PGSPGS----PGLPGKPGP 1117
Score = 40.8 bits (94), Expect = 0.006
Identities = 53/220 (24%), Positives = 67/220 (30%), Gaps = 50/220 (22%)
Query: 14 PDYPDYSGSQNRTQGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPN 73
P +P G+ G + G P +PG N G R +P PG E
Sbjct: 755 PGFPGERGNSGE-HGEIGLPGLPGLPGTPGNEGLDGPRGDPGQPGPPGEQGPPGRCIEG- 812
Query: 74 YPRSLSN-PDYSGTRSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQ 132
PR P +G + +T P +P D S F PG
Sbjct: 813 -PRGAQGLPGLNGLKGQQ-GRRGKTGPKGDPGIPGLDRSGF---------------PGET 855
Query: 133 RNPDFAGSSSSGNYAGSRTHPDHFGSLEP----------DYPGAQSNSDHPGPRANLNHP 182
+P G G R +P + G L P +PGA PGP N P
Sbjct: 856 GSPGIPGHQGEMGPLGQRGYPGNPGILGPPGEDGVIGMMGFPGA---IGPPGPPGNPGTP 912
Query: 183 GSRKNLEHTSFRINPYADSLGKPDYPGADIQPNSPPFFGE 222
G R G P PG Q +P GE
Sbjct: 913 GQR-----------------GSPGIPGVKGQRGTPGAKGE 935
Score = 40.4 bits (93), Expect = 0.008
Identities = 45/188 (23%), Positives = 56/188 (29%), Gaps = 40/188 (21%)
Query: 27 QGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSLSNPDYSGT 86
+G L + G P PG P G P S R +PG P P G
Sbjct: 996 RGDLGSTGNPGEPGLRGIPGSMGNMGMPGSKGKRGTLGFPGRAGRPGLPGIHGLQGDKG- 1054
Query: 87 RSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQRNPDFAGSSSSGNY 146
EP YSE +P PG +P G
Sbjct: 1055 --------------------EPGYSE----------GTRPGPPGPTGDPGLPGDMGKKGE 1084
Query: 147 AGSRTHPDHFGSLEPD----YPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRINPYADSL 202
G P H G P+ PG+ PGP +L G + L R P
Sbjct: 1085 MGQPGPPGHLGPAGPEGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPP----- 1139
Query: 203 GKPDYPGA 210
G P +PG+
Sbjct: 1140 GLPGFPGS 1147
Score = 37.7 bits (86), Expect = 0.055
Identities = 64/260 (24%), Positives = 81/260 (31%), Gaps = 39/260 (15%)
Query: 14 PDYPDYSGSQNRTQGYLKTQGYPDVPGPLNNPDYPGTRS------NPYSVASRTRPDYPG 67
P P G + G L TQ P +PGP P PG + + P PG
Sbjct: 460 PGIPGVDGPKGEP-GLLCTQ-CPYIPGPPGLPGLPGLHGVKGIPGRQGAAGLKGSPGSPG 517
Query: 68 SLAEPNYPR---SLSNPDYSGTRSNAYSAASRTS-PDHPTSLPEPDYSEFQSHPYHRASS 123
+ P +P + +P G + + P P +P P
Sbjct: 518 NTGLPGFPGFPGAQGDPGLKGEKGETLQPEGQVGVPGDPGLRGQPGRKGLDGIPGTPGVK 577
Query: 124 RQPD---------YPGSQRNPDFAGSSSSGNYAGSRTHPDHFGSLEPDYPGAQSNSDHP- 173
P G Q P GS S AG P + EP G Q P
Sbjct: 578 GLPGPKGELALSGEKGDQGPPGDPGSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPG 637
Query: 174 -----GPRANLN-------HPGSRKNLEHTSFRINP-YADSLGK---PDYPGADIQPNSP 217
GPR L+ PG H + P SLGK P PG D +P P
Sbjct: 638 PPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIPGSLGKCGDPGLPGPDGEPGIP 697
Query: 218 PFFGEPDYPSAEDNQNLPST 237
G P P + +Q P T
Sbjct: 698 G-IGFPGPPGPKGDQGFPGT 716
Score = 37.0 bits (84), Expect = 0.093
Identities = 51/218 (23%), Positives = 66/218 (30%), Gaps = 49/218 (22%)
Query: 28 GYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSLSNPDYSGTR 87
GYL + G P V GP P T+ PY P PG P
Sbjct: 455 GYLGSPGIPGVDGPKGEPGLLCTQC-PYIPGPPGLPGLPGLHGVKGIP------------ 501
Query: 88 SNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQRNPDFAGSSSS---- 143
+A + SP P + P + P +PG+Q +P G
Sbjct: 502 GRQGAAGLKGSPGSPGNTGLPGF---------------PGFPGAQGDPGLKGEKGETLQP 546
Query: 144 ------GNYAGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRINP 197
G R P G PG PGP+ L G + + P
Sbjct: 547 EGQVGVPGDPGLRGQPGRKGL--DGIPGTPGVKGLPGPKGELALSGEKGDQ-------GP 597
Query: 198 YADSLGKPDYPGADIQPNSPPFFGEPDYPSAEDNQNLP 235
D G P PG P PP +G P + Q +P
Sbjct: 598 PGDP-GSPGSPG-PAGPAGPPGYGPQGEPGLQGTQGVP 633
Score = 37.0 bits (84), Expect = 0.093
Identities = 61/267 (22%), Positives = 78/267 (29%), Gaps = 67/267 (25%)
Query: 14 PDYPDYSGSQNRT--QGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAE 71
P P G+ +G +G+P PG L PG N SR P PG
Sbjct: 1200 PGLPGRKGAMGDAGPRGPTGIEGFPGPPG-LPGAIIPGQTGNRGPPGSRGSPGAPGPPGP 1258
Query: 72 PN--------------YPRSLSNPDYSGTRSNAYSAASRTSPDHPTSLPEPDYSEFQSHP 117
P +P P +G + +P P +P + F
Sbjct: 1259 PGSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGRLGAPGTPGLPGPRGDPGFQGF---- 1314
Query: 118 YHRASSRQPDYPGSQRNPDFAGSSSSGNYAGSRTHPDHFGSL----------------EP 161
P G + NP F GS G + P G P
Sbjct: 1315 --------PGVKGEKGNPGFLGSIGPPGPIGPKGPPGVRGDPGTLKIISLPGSPGPPGTP 1366
Query: 162 DYPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRINPYADSLGKPDYPGADIQPNSPPFFG 221
PG Q PGP NL G R P D GKP PG + + G
Sbjct: 1367 GEPGMQGEPGPPGPPGNLGPCGPRG---------KPGKD--GKPGTPGPAGEKGNKGSKG 1415
Query: 222 EPDYPSAED----------NQNLPSTW 238
EP P+ D + P+TW
Sbjct: 1416 EPG-PAGSDGLPGLKGKRGDSGSPATW 1441
Score = 35.8 bits (81), Expect = 0.21
Identities = 54/211 (25%), Positives = 71/211 (33%), Gaps = 35/211 (16%)
Query: 28 GYLKTQGYPDV---PGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSLSNPDYS 84
G + G+P PGP NP PG R +P + + PG+ E
Sbjct: 889 GVIGMMGFPGAIGPPGPPGNPGTPGQRGSPGIPGVKGQRGTPGAKGE------------Q 936
Query: 85 GTRSN-AYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYP---GSQRNPDFAGS 140
G + N S S D EP F +P + + P P G + P AG
Sbjct: 937 GDKGNPGPSEISHVIGDK----GEPGLKGFAGNPGEKGNRGVPGMPGLKGLKGLPGPAGP 992
Query: 141 SSSGNYAGSRTHPDHFGSLEPDYPGAQSNSDHP---GPRANLNHPG--SRKNLEHTSFRI 195
GS +P G PG+ N P G R L PG R L I
Sbjct: 993 PGPRGDLGSTGNPGEPGL--RGIPGSMGNMGMPGSKGKRGTLGFPGRAGRPGLP----GI 1046
Query: 196 NPYADSLGKPDYPGADIQPNSPPFFGEPDYP 226
+ G+P Y +P P G+P P
Sbjct: 1047 HGLQGDKGEPGY-SEGTRPGPPGPTGDPGLP 1076
Score = 35.4 bits (80), Expect = 0.27
Identities = 48/200 (24%), Positives = 65/200 (32%), Gaps = 9/200 (4%)
Query: 34 GYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSLSNPDYSGTRSNAYSA 93
G P + GP P +PG+ + R PG E L P G R N +
Sbjct: 1131 GPPGIRGPPGLPGFPGSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAP--PGPRGNPGAQ 1188
Query: 94 ASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQRNPDFAGSSSSGNYA--GSRT 151
++ P P R + +PG P +GN GSR
Sbjct: 1189 GAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPPGSRG 1248
Query: 152 HPDHFGSLEPDYPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRINPYADSLGKPDYPGAD 211
P G+ P P G + ++ HPG K T+ + P LG P PG
Sbjct: 1249 SP---GAPGPPGPPGSHVIGIKGDKGSMGHPGP-KGPPGTAGDMGP-PGRLGAPGTPGLP 1303
Query: 212 IQPNSPPFFGEPDYPSAEDN 231
P F G P + N
Sbjct: 1304 GPRGDPGFQGFPGVKGEKGN 1323
Score = 34.7 bits (78), Expect = 0.46
Identities = 50/213 (23%), Positives = 67/213 (31%), Gaps = 17/213 (7%)
Query: 13 DPDYPDYSGSQNRTQGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAE- 71
+P P SG + G K G P PG P G P S + +PG + E
Sbjct: 269 EPGPPGPSGLPGESYGSEK--GAPGDPGLQGKPGKDGVPGFPGSEGVKGNRGFPGLMGED 326
Query: 72 --PNYPRSLSNPDYSGTRSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYP 129
+ P + G + Y + P P + P P P
Sbjct: 327 GIKGQKGDIGPPGFRGP-TEYYDTYQEKGDEGTPGPPGPRGARGPQGP--SGPPGVPGSP 383
Query: 130 GSQRNPDFAGSSSSGNYAGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLNHPGSRKNLE 189
GS R P G+ GS+ G PG+ + PG + PG ++
Sbjct: 384 GSSR-PGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAGSPGLPGSPGPPGPPGDI- 441
Query: 190 HTSFRINPYADS-----LGKPDYPGADIQPNSP 217
FR P D LG P PG D P
Sbjct: 442 --VFRKGPPGDHGLPGYLGSPGIPGVDGPKGEP 472
Score = 34.3 bits (77), Expect = 0.61
Identities = 32/131 (24%), Positives = 45/131 (34%), Gaps = 12/131 (9%)
Query: 13 DPDYPDYSG--SQNRTQGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLA 70
DP + + G + G+L + G PGP+ PG R +P ++ + P PG
Sbjct: 1308 DPGFQGFPGVKGEKGNPGFLGSIG---PPGPIGPKGPPGVRGDPGTLKIISLPGSPGPPG 1364
Query: 71 EPNYPRSLSNPDYSGTRSNAYSAASRTSP--DHPTSLPEPDYSEFQSHPYHRASSRQPDY 128
P P P G N R P D P P ++ S +P
Sbjct: 1365 TPGEPGMQGEPGPPGPPGNLGPCGPRGKPGKDGKPGTPGP-----AGEKGNKGSKGEPGP 1419
Query: 129 PGSQRNPDFAG 139
GS P G
Sbjct: 1420 AGSDGLPGLKG 1430
Score = 32.3 bits (72), Expect = 2.3
Identities = 75/351 (21%), Positives = 103/351 (29%), Gaps = 49/351 (13%)
Query: 14 PDYPDYSGSQNRTQGYLKTQGYPDVPGPLNNPDYPGTRSN--PYSVASRTRPDYPGSLAE 71
P P +GS+ +G +PG +P PGT N PY + P GS E
Sbjct: 81 PGLPGLTGSKG-------VRGISGLPGFSGSPGLPGTPGNTGPYGLVGV--PGCSGSKGE 131
Query: 72 PNYPRSLSNPDYSGTRSNAYSAASRTSP--DHPTSLPEPDYSEFQSHPYHRASSRQPDYP 129
+P Y G A + +P + L P + P +P
Sbjct: 132 QGFPGLPGTLGYPGIPGAAGLKGQKGAPAKEEDIELDAKGDPGLPGAPGPQGLPGPPGFP 191
Query: 130 GSQRNPDFAGSSSSGNYAGSRTHPDHFGSLEPDYPGAQSNSDHPGPRA-------NLNHP 182
G P G G R H G + G + GP L P
Sbjct: 192 GPVGPPGPPGFFGFPGAMGPRGPKGHMGERVIGHKGERGVKGLTGPPGPPGTVIVTLTGP 251
Query: 183 GSRKNLEH----------------TSFRINPYADSLGKPDYPGADIQPNSPPFFGEPDYP 226
+R +L+ + Y G P PG +P G P
Sbjct: 252 DNRTDLKGEKGDKGAMGEPGPPGPSGLPGESYGSEKGAPGDPGLQGKPGKDGVPGFPGSE 311
Query: 227 SAEDNQNLPSTWREPDYSDAENGHDYGSSETPKMTRGVLSRTSSIQPSFRHRSDDPVGSL 286
+ N+ P E D + G D G P RG + Q + P G
Sbjct: 312 GVKGNRGFPGLMGE-DGIKGQKG-DIG----PPGFRGPTEYYDTYQEKGDEGTPGPPGPR 365
Query: 287 WGENDYPEGIEMASMEMANSYGHSLPGAPGSGYVNPAYVGESGPVHAYGNP 337
P+G + S G S PG G+ P + G G G P
Sbjct: 366 GARG--PQG-PSGPPGVPGSPGSSRPGLRGA----PGWPGLKGSKGERGRP 409
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 45.4 bits (106), Expect = 3e-04
Identities = 76/326 (23%), Positives = 108/326 (33%), Gaps = 42/326 (12%)
Query: 34 GYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSLSNPDYSGTRSNAYSA 93
G P PGP PG S+ P + GS P + +G A
Sbjct: 950 GLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAG----APGP 1005
Query: 94 ASRTSPDHPTSLPEP------DYSEFQSHPYHRASSRQPDYP-GSQRNPDFAGSSSSGNY 146
A P P P P D E P+ +++R D P G P G
Sbjct: 1006 AGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFW-STARSADGPQGPPGLPGLKGDPGVPGL 1064
Query: 147 AGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRINPYADSLGKPD 206
G++ G P +PG GP+ GSR + +P D +G+P
Sbjct: 1065 PGAKGEVGADG--VPGFPGLPGREGIAGPQGPKGDRGSRGE------KGDPGKDGVGQPG 1116
Query: 207 YPGADIQPNSPPFFGEPDYPSAEDNQ--NLPSTWREPDYSDAENGHDYGSSETPKMTRGV 264
PG P PP G Y S +D ++P P ++ + PK G
Sbjct: 1117 LPG----PPGPP--GPVVYVSEQDGSVLSVPGPEGRPGFA------GFPGPAGPKGNLG- 1163
Query: 265 LSRTSSIQPSFRHRSDDPVGSLWGENDYPEGIEMASMEMANSYGHSLPGAPGSGYVNPAY 324
S+ P + +P GS++ P+G + + G PG Y P Y
Sbjct: 1164 -SKGERGSPGPKGEKGEP-GSIFS----PDGGALGPAQKGAKGEPGFRGPPGP-YGRPGY 1216
Query: 325 VGESGPVHAYGNPPLSECDWHKSPQG 350
GE G G P ++ K G
Sbjct: 1217 KGEIGFPGRPGRPGMNGLKGEKGEPG 1242
Score = 33.5 bits (75), Expect = 1.0
Identities = 40/170 (23%), Positives = 50/170 (29%), Gaps = 15/170 (8%)
Query: 17 PDYSGSQNRTQGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPR 76
PD +G G+ PGP P Y G P RP G E P
Sbjct: 1186 PDGGALGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFP---GRPGRPGMNGLKGEKGEP- 1241
Query: 77 SLSNPDYSGTRSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSR--QPDYPGSQRN 134
G S + P P P P + SSR P PG+Q
Sbjct: 1242 --------GDASLGFGMRGMPGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGP 1293
Query: 135 PDFAGSSSS-GNYAGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLNHPG 183
P G+ G P F LE + G + + G + PG
Sbjct: 1294 PGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPG 1343
Score = 33.5 bits (75), Expect = 1.0
Identities = 52/200 (26%), Positives = 63/200 (31%), Gaps = 46/200 (23%)
Query: 33 QGYPDVPGPLNNPDYPGT---RSNPYSVASRTRPDYPGSLAEPNYPRSLSNPDYSGTRSN 89
+G P PGP P PGT SN ++ +SR P P P + P G
Sbjct: 1251 RGMPGPPGPPGPPGPPGTPVYDSNVFAESSRPGP--------PGLPGNQGPPGPKG---- 1298
Query: 90 AYSAASRTSPDHPTSLPEPDY----SEFQSHPYHRASSRQPDYPGSQRNPDFAGSSSSG- 144
A P P D+ +E + R + Q G F GSS G
Sbjct: 1299 ---AKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPGGGGFFGSSLPGP 1355
Query: 145 -NYAGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRINPYADSLG 203
G R +P G P +S PGP PG Y G
Sbjct: 1356 PGPPGPRGYPGIPG------PKGESIRGQPGPPGPQGPPGI------------GYEGRQG 1397
Query: 204 KPDYPGADIQPNSPPFFGEP 223
P PG P PP F P
Sbjct: 1398 PPGPPG----PPGPPSFPGP 1413
Score = 30.8 bits (68), Expect = 6.7
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 28 GYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSL 78
GY QG P PGP P +PG SV P PG P P ++
Sbjct: 1391 GYEGRQGPPGPPGPPGPPSFPGPHRQTISV-----PGPPGPPGPPGPPGTM 1436
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 45.4 bits (106), Expect = 3e-04
Identities = 76/326 (23%), Positives = 108/326 (33%), Gaps = 42/326 (12%)
Query: 34 GYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSLSNPDYSGTRSNAYSA 93
G P PGP PG S+ P + GS P + +G A
Sbjct: 535 GLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAG----APGP 590
Query: 94 ASRTSPDHPTSLPEP------DYSEFQSHPYHRASSRQPDYP-GSQRNPDFAGSSSSGNY 146
A P P P P D E P+ +++R D P G P G
Sbjct: 591 AGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFW-STARSADGPQGPPGLPGLKGDPGVPGL 649
Query: 147 AGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRINPYADSLGKPD 206
G++ G P +PG GP+ GSR + +P D +G+P
Sbjct: 650 PGAKGEVGADG--VPGFPGLPGREGIAGPQGPKGDRGSRGE------KGDPGKDGVGQPG 701
Query: 207 YPGADIQPNSPPFFGEPDYPSAEDNQ--NLPSTWREPDYSDAENGHDYGSSETPKMTRGV 264
PG P PP G Y S +D ++P P ++ + PK G
Sbjct: 702 LPG----PPGPP--GPVVYVSEQDGSVLSVPGPEGRPGFA------GFPGPAGPKGNLG- 748
Query: 265 LSRTSSIQPSFRHRSDDPVGSLWGENDYPEGIEMASMEMANSYGHSLPGAPGSGYVNPAY 324
S+ P + +P GS++ P+G + + G PG Y P Y
Sbjct: 749 -SKGERGSPGPKGEKGEP-GSIFS----PDGGALGPAQKGAKGEPGFRGPPGP-YGRPGY 801
Query: 325 VGESGPVHAYGNPPLSECDWHKSPQG 350
GE G G P ++ K G
Sbjct: 802 KGEIGFPGRPGRPGMNGLKGEKGEPG 827
Score = 33.5 bits (75), Expect = 1.0
Identities = 40/170 (23%), Positives = 50/170 (29%), Gaps = 15/170 (8%)
Query: 17 PDYSGSQNRTQGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPR 76
PD +G G+ PGP P Y G P RP G E P
Sbjct: 771 PDGGALGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFP---GRPGRPGMNGLKGEKGEP- 826
Query: 77 SLSNPDYSGTRSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSR--QPDYPGSQRN 134
G S + P P P P + SSR P PG+Q
Sbjct: 827 --------GDASLGFGMRGMPGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGP 878
Query: 135 PDFAGSSSS-GNYAGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLNHPG 183
P G+ G P F LE + G + + G + PG
Sbjct: 879 PGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPG 928
Score = 33.5 bits (75), Expect = 1.0
Identities = 52/200 (26%), Positives = 63/200 (31%), Gaps = 46/200 (23%)
Query: 33 QGYPDVPGPLNNPDYPGT---RSNPYSVASRTRPDYPGSLAEPNYPRSLSNPDYSGTRSN 89
+G P PGP P PGT SN ++ +SR P P P + P G
Sbjct: 836 RGMPGPPGPPGPPGPPGTPVYDSNVFAESSRPGP--------PGLPGNQGPPGPKG---- 883
Query: 90 AYSAASRTSPDHPTSLPEPDY----SEFQSHPYHRASSRQPDYPGSQRNPDFAGSSSSG- 144
A P P D+ +E + R + Q G F GSS G
Sbjct: 884 ---AKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPGGGGFFGSSLPGP 940
Query: 145 -NYAGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRINPYADSLG 203
G R +P G P +S PGP PG Y G
Sbjct: 941 PGPPGPRGYPGIPG------PKGESIRGQPGPPGPQGPPGI------------GYEGRQG 982
Query: 204 KPDYPGADIQPNSPPFFGEP 223
P PG P PP F P
Sbjct: 983 PPGPPG----PPGPPSFPGP 998
Score = 30.8 bits (68), Expect = 6.7
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 28 GYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSL 78
GY QG P PGP P +PG SV P PG P P ++
Sbjct: 976 GYEGRQGPPGPPGPPGPPSFPGPHRQTISV-----PGPPGPPGPPGPPGTM 1021
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 45.4 bits (106), Expect = 3e-04
Identities = 76/326 (23%), Positives = 108/326 (33%), Gaps = 42/326 (12%)
Query: 34 GYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSLSNPDYSGTRSNAYSA 93
G P PGP PG S+ P + GS P + +G A
Sbjct: 715 GLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAG----APGP 770
Query: 94 ASRTSPDHPTSLPEP------DYSEFQSHPYHRASSRQPDYP-GSQRNPDFAGSSSSGNY 146
A P P P P D E P+ +++R D P G P G
Sbjct: 771 AGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFW-STARSADGPQGPPGLPGLKGDPGVPGL 829
Query: 147 AGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRINPYADSLGKPD 206
G++ G P +PG GP+ GSR + +P D +G+P
Sbjct: 830 PGAKGEVGADG--VPGFPGLPGREGIAGPQGPKGDRGSRGE------KGDPGKDGVGQPG 881
Query: 207 YPGADIQPNSPPFFGEPDYPSAEDNQ--NLPSTWREPDYSDAENGHDYGSSETPKMTRGV 264
PG P PP G Y S +D ++P P ++ + PK G
Sbjct: 882 LPG----PPGPP--GPVVYVSEQDGSVLSVPGPEGRPGFA------GFPGPAGPKGNLG- 928
Query: 265 LSRTSSIQPSFRHRSDDPVGSLWGENDYPEGIEMASMEMANSYGHSLPGAPGSGYVNPAY 324
S+ P + +P GS++ P+G + + G PG Y P Y
Sbjct: 929 -SKGERGSPGPKGEKGEP-GSIFS----PDGGALGPAQKGAKGEPGFRGPPGP-YGRPGY 981
Query: 325 VGESGPVHAYGNPPLSECDWHKSPQG 350
GE G G P ++ K G
Sbjct: 982 KGEIGFPGRPGRPGMNGLKGEKGEPG 1007
Score = 33.5 bits (75), Expect = 1.0
Identities = 40/170 (23%), Positives = 50/170 (29%), Gaps = 15/170 (8%)
Query: 17 PDYSGSQNRTQGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPR 76
PD +G G+ PGP P Y G P RP G E P
Sbjct: 951 PDGGALGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFP---GRPGRPGMNGLKGEKGEP- 1006
Query: 77 SLSNPDYSGTRSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSR--QPDYPGSQRN 134
G S + P P P P + SSR P PG+Q
Sbjct: 1007 --------GDASLGFGMRGMPGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGP 1058
Query: 135 PDFAGSSSS-GNYAGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLNHPG 183
P G+ G P F LE + G + + G + PG
Sbjct: 1059 PGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPG 1108
Score = 33.5 bits (75), Expect = 1.0
Identities = 52/200 (26%), Positives = 63/200 (31%), Gaps = 46/200 (23%)
Query: 33 QGYPDVPGPLNNPDYPGT---RSNPYSVASRTRPDYPGSLAEPNYPRSLSNPDYSGTRSN 89
+G P PGP P PGT SN ++ +SR P P P + P G
Sbjct: 1016 RGMPGPPGPPGPPGPPGTPVYDSNVFAESSRPGP--------PGLPGNQGPPGPKG---- 1063
Query: 90 AYSAASRTSPDHPTSLPEPDY----SEFQSHPYHRASSRQPDYPGSQRNPDFAGSSSSG- 144
A P P D+ +E + R + Q G F GSS G
Sbjct: 1064 ---AKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPGGGGFFGSSLPGP 1120
Query: 145 -NYAGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRINPYADSLG 203
G R +P G P +S PGP PG Y G
Sbjct: 1121 PGPPGPRGYPGIPG------PKGESIRGQPGPPGPQGPPGI------------GYEGRQG 1162
Query: 204 KPDYPGADIQPNSPPFFGEP 223
P PG P PP F P
Sbjct: 1163 PPGPPG----PPGPPSFPGP 1178
Score = 30.8 bits (68), Expect = 6.7
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 28 GYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSL 78
GY QG P PGP P +PG SV P PG P P ++
Sbjct: 1156 GYEGRQGPPGPPGPPGPPSFPGPHRQTISV-----PGPPGPPGPPGPPGTM 1201
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 45.1 bits (105), Expect = 3e-04
Identities = 45/190 (23%), Positives = 66/190 (34%), Gaps = 33/190 (17%)
Query: 14 PDYPDYSGSQNRTQGYLKTQGYPDVPGPLNNPDYPGTRSN---PYSVASRTRPDYPGSLA 70
P P + GS+ G + T G P PGP+ P PG + + P S R P G
Sbjct: 869 PGIPGFPGSKGE-MGVMGTPGQPGSPGPVGAPGLPGEKGDHGFPGSSGPRGDPGLKGDKG 927
Query: 71 E---PNYPRSLSNPDYSGTRSN------------AYSAASRTSPDHPTSLPEPDYSEFQS 115
+ P P S+ D + SR P P +P D
Sbjct: 928 DVGLPGKPGSMDKVDMGSMKGQKGDQGEKGQIGPIGEKGSRGDPGTP-GVPGKD------ 980
Query: 116 HPYHRASSRQPDYPGSQRNPDFAGSSSSGNYAGSRTHPDHFGSLEPDYPGAQSNSDHPGP 175
+ QP PG + +P +G+ + G + G P PG + PGP
Sbjct: 981 -----GQAGQPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGL--PGTPGEKGVPGIPGP 1033
Query: 176 RANLNHPGSR 185
+ + PG +
Sbjct: 1034 QGSPGLPGDK 1043
Score = 43.5 bits (101), Expect = 0.001
Identities = 71/327 (21%), Positives = 99/327 (30%), Gaps = 27/327 (8%)
Query: 34 GYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSLSNPDYSGTRSNAYSA 93
G P +PG PG + +P SV P PG + P P G +
Sbjct: 1088 GIPGMPGS------PGLKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGVKG-EAGLPGT 1140
Query: 94 ASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQRNPDFAGSSSSGNYAGSRTHP 153
T P P D P +P PG + P F G+ G P
Sbjct: 1141 PGPTGPAGQKGEPGSD-----GIPGSAGEKGEPGLPG-RGFPGFPGAKGDKGSKGEVGFP 1194
Query: 154 DHFGSLEPDYPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRINPYADSLGKPDYPGADIQ 213
GS P PG++ GP PG + H + G+P PG
Sbjct: 1195 GLAGS--PGIPGSKGEQGFMGPPGPQGQPGLPGSPGHATEGPKGDRGPQGQPGLPGLP-G 1251
Query: 214 PNSPPFFGEPDYPSAEDNQNLPSTWREPDYSDAENGHDYGSSETPKMTRGVLSRTSSIQP 273
P PP G P + ++ P P + + + G+ + P
Sbjct: 1252 PMGPP--GLPGIDGVKGDKGNPGWPGAPGVPGPKGDPGFQGMPGIGGSPGITGSKGDMGP 1309
Query: 274 SFRHRSDDPVGSLWGENDYP--EGIEMASMEMANSYGHSLPGAPGSGYVNPAYVGESGPV 331
V G P +GI+ + LPG PG GE G
Sbjct: 1310 P-------GVPGFQGPKGLPGLQGIKGDQGDQGVPGAKGLPGPPGPPGPYDIIKGEPGLP 1362
Query: 332 HAYGNPPLSECDWHKSPQGQKLIASLI 358
G P L P+GQ+ + L+
Sbjct: 1363 GPEGPPGLKGLQGLPGPKGQQGVTGLV 1389
Score = 40.0 bits (92), Expect = 0.011
Identities = 45/195 (23%), Positives = 56/195 (28%), Gaps = 12/195 (6%)
Query: 33 QGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSLSNPDYSGTRSNAYS 92
QG P V G P PG R P + PG EP YP + G + A
Sbjct: 269 QGMPGV-GEKGEPGKPGPRGKPGKDGDKGEKGSPGFPGEPGYPGLIGRQGPQGEKGEAGP 327
Query: 93 AASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQRNP-----DFAGSSSSGNYA 147
L E + P R +PG P G + + +
Sbjct: 328 PGPPGIVIGTGPLGEKGERGYPGTPGPRGEPGPKGFPGLPGQPGPPGLPVPGQAGAPGFP 387
Query: 148 GSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRINPYADSLGKPDY 207
G R G PG PGP + PG + + P G P
Sbjct: 388 GERGEKGDRGFPGTSLPGPSGRDGLPGPPGSPGPPG-QPGYTNGIVECQP-----GPPGD 441
Query: 208 PGADIQPNSPPFFGE 222
G P P F GE
Sbjct: 442 QGPPGIPGQPGFIGE 456
Score = 37.0 bits (84), Expect = 0.093
Identities = 53/232 (22%), Positives = 70/232 (30%), Gaps = 22/232 (9%)
Query: 13 DPDYPDYSGSQNR--TQGYLKTQGYPDVPGPLNNPDYPG------TRSNPYSVASRTRPD 64
+P P G++ GY G P +PG P PG T+ + P
Sbjct: 83 EPGLPGTKGTRGPPGASGYPGNPGLPGIPGQDGPPGPPGIPGCNGTKGERGPLGPPGLPG 142
Query: 65 YPGSLAEPNYPRSLSNP-DYSGTRSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASS 123
+ G+ P P +P + G R P P + P Q +
Sbjct: 143 FAGNPGPPGLPGMKGDPGEILGHVPGMLLKGERGFPGIPGTPGPPGLPGLQGPVGPPGFT 202
Query: 124 RQPDYPGSQRNPDFAGSSSSGNYAGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLNHPG 183
P PG P G D S P PG Q+ G A G
Sbjct: 203 GPPGPPGPPGPPGEKGQMGLSFQGPKGDKGDQGVSGPPGVPG-QAQVQEKGDFATKGEKG 261
Query: 184 SRKNLEHTSFRINPYADSLGKPDYPGADIQPN---------SPPFFGEPDYP 226
+ F+ P G+P PG +P SP F GEP YP
Sbjct: 262 QKGE---PGFQGMPGVGEKGEPGKPGPRGKPGKDGDKGEKGSPGFPGEPGYP 310
Score = 35.8 bits (81), Expect = 0.21
Identities = 91/392 (23%), Positives = 115/392 (29%), Gaps = 76/392 (19%)
Query: 11 EEDPDYPDYSGSQNRTQGYLKTQGYPDVPGPLNN---PDYPGTRSNPYSVASRTRPDYPG 67
++ P P N T+G G P +PG N P PG + +P + PG
Sbjct: 113 QDGPPGPPGIPGCNGTKGERGPLGPPGLPGFAGNPGPPGLPGMKGDPGEILGHV----PG 168
Query: 68 SLAE-----PNYPRSLSNPDYSGTRSNAYSAASRTSPDHPTSLPEPDYSEFQ-------- 114
L + P P + P G + T P P P P + Q
Sbjct: 169 MLLKGERGFPGIPGTPGPPGLPGLQ-GPVGPPGFTGPPGPPGPPGPPGEKGQMGLSFQGP 227
Query: 115 -SHPYHRASSRQPDYPGS---QRNPDFAGSSSSGNYA-------------------GSRT 151
+ S P PG Q DFA G G R
Sbjct: 228 KGDKGDQGVSGPPGVPGQAQVQEKGDFATKGEKGQKGEPGFQGMPGVGEKGEPGKPGPRG 287
Query: 152 HPDHFGSL----------EPDYPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRINPYADS 201
P G EP YPG G + PG + T P +
Sbjct: 288 KPGKDGDKGEKGSPGFPGEPGYPGLIGRQGPQGEKGEAGPPGPPGIVIGT----GPLGEK 343
Query: 202 LGKPDYPGADIQPNSPPFFGEPDYPSAEDNQNLPSTWREPDYSDAENGHDYGSSETPKMT 261
G+ YPG P G P P LP P + A + K
Sbjct: 344 -GERGYPGTPGPRGEPGPKGFPGLPGQPGPPGLP----VPGQAGAPG---FPGERGEKGD 395
Query: 262 RGVLSRTSSIQPSFRHRSDDPVGSLW--GENDYPEGIEMASMEMANSYGHSLPGAPGSGY 319
RG TS PS R P GS G+ Y GI G PG PG
Sbjct: 396 RG-FPGTSLPGPSGRDGLPGPPGSPGPPGQPGYTNGIVECQPGPPGDQGP--PGIPG--- 449
Query: 320 VNPAYVGESGPVHAYGNPPL-SECDWHKSPQG 350
P ++GE G G L + D ++ P G
Sbjct: 450 -QPGFIGEIGEKGQKGESCLICDIDGYRGPPG 480
Score = 35.4 bits (80), Expect = 0.27
Identities = 69/321 (21%), Positives = 98/321 (30%), Gaps = 45/321 (14%)
Query: 34 GYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEP---NYPRSLSNPDYSGTRSNA 90
GY PGP P G P + R P G P P + P G
Sbjct: 474 GYRGPPGPQGPPGEIGFPGQPGAKGDRGLPGRDGVAGVPGPQGTPGLIGQPGAKGEPGEF 533
Query: 91 YSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQRNPDFAGSSSSGNYAGSR 150
Y P P + P G P GS S G R
Sbjct: 534 YFDLRLKGDKGDPGFP--------GQPGMTGRAGSPGRDGHPGLPGPKGSPGSVGLKGER 585
Query: 151 THPDHFGSLEPDYPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRINPYADSL-GKPDYPG 209
P G +PG++ ++ PGP G + F P + L G PG
Sbjct: 586 GPPGGVG-----FPGSRGDTGPPGP-PGYGPAGPIGDKGQAGFPGGPGSPGLPGPKGEPG 639
Query: 210 ADIQPNSPP----FFGEPDYPSAEDNQNLPSTWREPDY-----SDAENGHDYGSSETPKM 260
+ PP G P +P + ++ P T P + + G + PK
Sbjct: 640 KIVPLPGPPGAEGLPGSPGFPGPQGDRGFPGTPGRPGLPGEKGAVGQPGIGFPGPPGPKG 699
Query: 261 TRGVLSRT----SSIQPSFRHRSDDPVGSLWGENDYPEGIEMASMEMANSYGHSLPGAPG 316
G+ + +P F +P + G+ P G+ + ++ LPG PG
Sbjct: 700 VDGLPGDMGPPGTPGRPGFNGLPGNP--GVQGQKGEP-GVGLPGLK-------GLPGLPG 749
Query: 317 SGYVNPAYVGESGPVHAYGNP 337
P GE G + G P
Sbjct: 750 I----PGTPGEKGSIGVPGVP 766
Score = 33.1 bits (74), Expect = 1.3
Identities = 40/180 (22%), Positives = 52/180 (28%), Gaps = 19/180 (10%)
Query: 13 DPDYPDYSGSQNRTQGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEP 72
DP +P G R PG +P PG + +P SV + PG + P
Sbjct: 545 DPGFPGQPGMTGRAGS----------PGRDGHPGLPGPKGSPGSVGLKGERGPPGGVGFP 594
Query: 73 NY--------PRSLSNPDYSGTRSNAYSAASRTSPDHPTSLPEP-DYSEFQSHPYHRASS 123
P G + A SP P EP P
Sbjct: 595 GSRGDTGPPGPPGYGPAGPIGDKGQAGFPGGPGSPGLPGPKGEPGKIVPLPGPPGAEGLP 654
Query: 124 RQPDYPGSQRNPDFAGSSSSGNYAGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLNHPG 183
P +PG Q + F G+ G + G P PG + PG PG
Sbjct: 655 GSPGFPGPQGDRGFPGTPGRPGLPGEKGAVGQPGIGFPGPPGPKGVDGLPGDMGPPGTPG 714
Score = 31.2 bits (69), Expect = 5.1
Identities = 49/216 (22%), Positives = 66/216 (30%), Gaps = 24/216 (11%)
Query: 25 RTQGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSLSNPDYS 84
R +G G+P PG PG +P + P G E P + P
Sbjct: 538 RLKGDKGDPGFPGQPGMTGRAGSPGRDGHPGLPGPKGSPGSVGLKGERGPPGGVGFP--- 594
Query: 85 GTRSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQRNPDFAGSSSSG 144
G+R + T P P P Y + P Q +PG +P G
Sbjct: 595 GSRGD-------TGPPGP-----PGYG--PAGPI--GDKGQAGFPGGPGSPGLPGPKGEP 638
Query: 145 NYAGSRTHPDHFGSL--EPDYPGAQSNSDHPGPRANLNHPGSRKNLEH--TSFRINPYAD 200
P L P +PG Q + PG PG + + F P
Sbjct: 639 GKIVPLPGPPGAEGLPGSPGFPGPQGDRGFPGTPGRPGLPGEKGAVGQPGIGFPGPPGPK 698
Query: 201 SL-GKPDYPGADIQPNSPPFFGEPDYPSAEDNQNLP 235
+ G P G P P F G P P + + P
Sbjct: 699 GVDGLPGDMGPPGTPGRPGFNGLPGNPGVQGQKGEP 734
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 44.3 bits (103), Expect = 6e-04
Identities = 43/193 (22%), Positives = 62/193 (32%), Gaps = 19/193 (9%)
Query: 20 SGSQNRTQGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSLS 79
S +N G + +G P G P G R N + + P G P +P
Sbjct: 291 SPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFP---- 346
Query: 80 NPDYSGTRSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQP-DYPGSQRNPDFA 138
A A P P P + P A + P PG+ P
Sbjct: 347 ---------GAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAK 397
Query: 139 GSSSSGNYAGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRINPY 198
G++ + AG+ P G P PG PGP+ N PG+ + T + P
Sbjct: 398 GANGAPGIAGAPGFPGARGPSGPQGPGGP-----PGPKGNSGEPGAPGSKGDTGAKGEPG 452
Query: 199 ADSLGKPDYPGAD 211
+ P P +
Sbjct: 453 PVGVQGPPGPAGE 465
Score = 38.1 bits (87), Expect = 0.042
Identities = 45/195 (23%), Positives = 63/195 (32%), Gaps = 19/195 (9%)
Query: 40 GPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSLSNPDYSGTRSNAYSAASRTSP 99
G P PG R P +R PG+ P G + +A A + P
Sbjct: 233 GEAGKPGRPGERGPPGPQGAR---GLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEP 289
Query: 100 DHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQRNPDFAGSSSSGNYAGSRTHPDHFGSL 159
P P + P R P G++ N G++ G P G++
Sbjct: 290 GSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAV 349
Query: 160 EPDYPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRINPYADSLGKPDYPGADIQP----- 214
GA+ + GPR + G R A + G PGAD QP
Sbjct: 350 -----GAKGEAGPQGPRGSEGPQGVRGEPGPPG-----PAGAAGPAGNPGADGQPGAKGA 399
Query: 215 -NSPPFFGEPDYPSA 228
+P G P +P A
Sbjct: 400 NGAPGIAGAPGFPGA 414
Score = 36.2 bits (82), Expect = 0.16
Identities = 52/233 (22%), Positives = 72/233 (30%), Gaps = 19/233 (8%)
Query: 12 EDPDYPDYSGSQNRTQGYLKTQGYPDVPGPLNNPD---------YPGTRSNPYSVASRTR 62
+ P P + QG + G+ +PGP P PG P +R
Sbjct: 619 QGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGE 678
Query: 63 PDYPGSLAEPNYPRSLSNPDYSGTRSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHRAS 122
+PG P +G N + +P P S P Q P R +
Sbjct: 679 RGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPG---LQGMPGERGA 735
Query: 123 SRQPDYPGSQRNPDFAGSSSSGNYAGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLNHP 182
+ P G + + G+ S G R G P GA + GP
Sbjct: 736 AGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIG--PPGPAGAPGDKGESGPSGPAGPT 793
Query: 183 GSRKNLEHTSFRINPYADSLGKPDYPGADIQPNSPPFFGEPDYPSAEDNQNLP 235
G+R P P PGAD QP + GEP A+ + P
Sbjct: 794 GARGAPGDRGEPGPPGPAGFAGP--PGADGQPGAK---GEPGDAGAKGDAGPP 841
Score = 34.3 bits (77), Expect = 0.61
Identities = 53/249 (21%), Positives = 76/249 (30%), Gaps = 23/249 (9%)
Query: 7 NNWSEEDPDYPDYSGSQNRT--QGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPD 64
N+ ++ D P GSQ QG +G +PGP + G + S
Sbjct: 705 NDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRG 764
Query: 65 YPGSLAEPNYPRSLSNPDYSGTRSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSR 124
G + P + + SG A +R +P P + F P +
Sbjct: 765 LTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPP---GADG 821
Query: 125 QPDYPGSQRNPDFAGSSSSGNYAGSRTHPDHFGSL----------------EPDYPGAQS 168
QP G + G + AG P G++ +PGA
Sbjct: 822 QPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAG 881
Query: 169 NSDHPGPRANLNHPGSRKNLEHTSFRINPYADSLGKPDYPGADIQPNSPPFFGEPDYPSA 228
PGP N PG + P ++ G PG P P GE P A
Sbjct: 882 RVGPPGPSGNAGPPGPPGPAGKEGGK-GPRGET-GPAGRPGEVGPPGPPGPAGEKGSPGA 939
Query: 229 EDNQNLPST 237
+ P T
Sbjct: 940 DGPAGAPGT 948
Score = 32.3 bits (72), Expect = 2.3
Identities = 60/244 (24%), Positives = 76/244 (31%), Gaps = 47/244 (19%)
Query: 33 QGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSLSNPDYSGTRSNAYS 92
+G P G PG + + P PG+ P P + SG R
Sbjct: 1015 EGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGA---PGAPGPVGPAGKSGDRGET-G 1070
Query: 93 AASRTSPDHPTSL--------PEPDYSEFQSH-----PYHRASSRQPDYPGSQRNPDFAG 139
A P P P D E HR S PG +P G
Sbjct: 1071 PAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQG 1130
Query: 140 SSSSGNYAGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRINPYA 199
S + AG R P G+ PG + PGP + PG R A
Sbjct: 1131 PSGASGPAGPRGPPGSAGA-----PGKDGLNGLPGP---IGPPGPRGRTGD--------A 1174
Query: 200 DSLGKPDYPGADIQPNSPPFFGEPDYPSAE-DNQNLPSTWREPDYSDAENGHDYGSSETP 258
+G P PG PP G P PSA D LP +P A +G Y ++
Sbjct: 1175 GPVGPPGPPG-------PP--GPPGPPSAGFDFSFLP----QPPQEKAHDGGRYYRADDA 1221
Query: 259 KMTR 262
+ R
Sbjct: 1222 NVVR 1225
Score = 30.8 bits (68), Expect = 6.7
Identities = 44/183 (24%), Positives = 56/183 (30%), Gaps = 39/183 (21%)
Query: 24 NRTQGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNY-----PRSL 78
N G G+P GP + P PG P + P PGS + P +
Sbjct: 400 NGAPGIAGAPGFPGARGP-SGPQGPGGPPGPKGNSGE--PGAPGSKGDTGAKGEPGPVGV 456
Query: 79 SNPDYSGTRSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQ-----R 133
P G +R P PT LP P P R +PG+ +
Sbjct: 457 QGPP--GPAGEEGKRGARGEPG-PTGLPGP--------PGERGGPGSRGFPGADGVAGPK 505
Query: 134 NPDFAGSSSSGNYAGSRTHPDHFG-------------SLEPDYPGAQSNSDHPGPRANLN 180
P AG S AG + P G + P PG + PGP
Sbjct: 506 GP--AGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDG 563
Query: 181 HPG 183
PG
Sbjct: 564 RPG 566
Score = 30.8 bits (68), Expect = 6.7
Identities = 42/194 (21%), Positives = 60/194 (30%), Gaps = 26/194 (13%)
Query: 17 PDYSGSQNRTQGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGS-------- 68
P SG++ +G+ +G PGP G N + P PGS
Sbjct: 670 PGPSGARGE-RGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQG 728
Query: 69 ---------LAEPNYPRSLSNP---DYSGTRSNAYSAASRTSPDHPTSLPEPDYSEFQSH 116
L P R + P D S + P P P S
Sbjct: 729 MPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSG 788
Query: 117 PYHRASSR----QPDYPGSQRNPDFAGSSSSGNYAGSRTHPDHFGSL-EPDYPGAQSNSD 171
P +R PG FAG + G++ P G+ + PG +
Sbjct: 789 PAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAG 848
Query: 172 HPGPRANLNHPGSR 185
PGP N+ PG++
Sbjct: 849 PPGPIGNVGAPGAK 862
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 43.9 bits (102), Expect = 8e-04
Identities = 75/321 (23%), Positives = 96/321 (29%), Gaps = 48/321 (14%)
Query: 33 QGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLA---EPNYPRSLSNPDYSGTRSN 89
QG P PGP PG + P P G L E P P +G
Sbjct: 677 QGLPGPPGPPGEGGKPGDQGVPGD------PGAVGPLGPRGERGNPGERGEPGITGLPGE 730
Query: 90 AYSAASRTSPDHPTSLPEPDYSE-------FQSHPYHRASSRQPDYPGSQRNPDFAGSSS 142
A PD P P P + Q P R + P G + G+
Sbjct: 731 KGMAGGH-GPDGPKGSPGPSGTPGDTGPPGLQGMPGERGIAGTPGPKGDRGGIGEKGAEG 789
Query: 143 SGNYAGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLNHPGSRKNL----EHTSFRINPY 198
+ G+R P G P G PGPR + PGSR N E+ +
Sbjct: 790 TAGNDGARGLPGPLGP--PGPAGPTGEKGEPGPRGLVGPPGSRGNPGSRGENGPTGAVGF 847
Query: 199 ADSLGKPDYPGADIQPNSPPFFGEPDYPSAEDNQNLPSTWREPDYSDAENGHDYGSSETP 258
A G PG +P P G+ P + P + G ++ P
Sbjct: 848 AGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPHGPNGVPGLKGGR---GTQGP 904
Query: 259 KMTRGVLSRTSSIQPSFRHRSDDPVGSLWGE--NDYPEGIEMASMEMANSYGHSLPGAPG 316
G + P + P G L GE + P G L G PG
Sbjct: 905 PGATGFPGSAGRVGPPGPAGAPGPAGPL-GEPGKEGPPG---------------LRGDPG 948
Query: 317 SGYVNPAYVGESGPVHAYGNP 337
S VG+ GP G P
Sbjct: 949 S----HGRVGDRGPAGPPGGP 965
Score = 38.9 bits (89), Expect = 0.025
Identities = 74/323 (22%), Positives = 95/323 (29%), Gaps = 40/323 (12%)
Query: 14 PDYPDYSGSQNRTQGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPN 73
P P G++ T G QG GPL P G P S+ R +P GS+ P
Sbjct: 563 PGEPGLPGARGLT-GNPGVQGPEGKLGPLGAPGEDGRPGPPGSIGIRGQP---GSMGLPG 618
Query: 74 YPRSLSNPDYSGTRSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQR 133
S +P G NA R +P + R P G Q
Sbjct: 619 PKGSSGDPGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGPPGLAGERGEQGPPGPTGFQG 678
Query: 134 NPDFAGSSSSGNYAGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLNHPGSRKNLEHTSF 193
P G G G + P G++ P GPR +PG R
Sbjct: 679 LPGPPGPPGEGGKPGDQGVPGDPGAVGP-----------LGPRGERGNPGER-------- 719
Query: 194 RINPYADSLGKPDYPGADIQPNSPPFFGEPDYPSAEDN-QNLPSTWREPDYSDAENGHDY 252
G+P G + G PD P P P
Sbjct: 720 ---------GEPGITGLPGEKGMAGGHG-PDGPKGSPGPSGTPGDTGPPGLQGMPGERGI 769
Query: 253 GSSETPKMTRGVLSRTSSIQPSFRHRSDDPVGSLWGENDYPEGIEMASMEMANSYGHSLP 312
+ PK RG + + + + G L P G + E L
Sbjct: 770 AGTPGPKGDRGGIGEKGAEGTAGNDGARGLPGPLG-----PPGPAGPTGEKGEPGPRGLV 824
Query: 313 GAPGSGYVNPAYVGESGPVHAYG 335
G PGS NP GE+GP A G
Sbjct: 825 GPPGS-RGNPGSRGENGPTGAVG 846
Score = 38.5 bits (88), Expect = 0.032
Identities = 82/332 (24%), Positives = 99/332 (29%), Gaps = 25/332 (7%)
Query: 33 QGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSLSNPDYSGTRSNAYS 92
QG GP P PG + SR PG E P NP G A S
Sbjct: 227 QGQQGGAGPTGPPGEPGDPGPMGPIGSRGPEGPPGKPGEDGEPGRNGNP---GEVGFAGS 283
Query: 93 AASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQRNPDFAGSSSSGNYAGSRTH 152
+R P P P + H + PGS+ G + G R
Sbjct: 284 PGARGFPGAPGL---PGLKGHRGHKGLEGPKGEVGAPGSKGEAGPTGPMGAMGPLGPRGM 340
Query: 153 PDHFGSL----EPDYPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRINPYADSLGKPDYP 208
P G L P GA PGP L PGS + + P+ P
Sbjct: 341 PGERGRLGPQGAPGQRGAHGMPGKPGPMGPLGIPGSSGFPGNPGMKGEAGPTGARGPEGP 400
Query: 209 GADIQPNSPPF-FGEPDYPSAEDNQNLPSTWREPDYSDAENGHDYGSSETPKMTRGVLSR 267
PP G P P A P + P S +G GS+ P G
Sbjct: 401 QGQRGETGPPGPVGSPGLPGAIGTDGTPGA-KGPTGSPGTSGPP-GSAGPP----GSPGP 454
Query: 268 TSSIQP-SFRHRSDDP-VGSLWGE-----NDYPEGIEMASMEMANSYGHSLPGAPGSGYV 320
S P R + DP V GE P GI+ G PG+
Sbjct: 455 QGSTGPQGIRGQPGDPGVPGFKGEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGDPGT-VG 513
Query: 321 NPAYVGESGPVHAYGNPPLSECDWHKSPQGQK 352
P VGE G G P K QG++
Sbjct: 514 PPGPVGERGAPGNRGFPGSDGLPGPKGAQGER 545
Score = 35.4 bits (80), Expect = 0.27
Identities = 77/340 (22%), Positives = 107/340 (31%), Gaps = 69/340 (20%)
Query: 34 GYPDVPGPLNNPDYPGT--RSNPYSVASRTRPD----------YPGSLAE--PNYPRSLS 79
G P PGP +P +PG S P+S + PGS+ P P+ L
Sbjct: 168 GQPGAPGPPGHPSHPGPDGLSRPFSAQMAGLDEKSGLGSQVGLMPGSVGPVGPRGPQGL- 226
Query: 80 NPDYSGTRSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQRNPDFAG 139
G + A P P + + P +P G+ FAG
Sbjct: 227 ----QGQQGGAGPTGPPGEPGDPGPMGPIGSRGPEGPPGKPGEDGEPGRNGNPGEVGFAG 282
Query: 140 SSSSGNYAGS------RTHPDHFGSLEP----DYPGAQSNSDHPGPRANLNHPGSRKNLE 189
S + + G+ + H H G P PG++ + GP + G R +
Sbjct: 283 SPGARGFPGAPGLPGLKGHRGHKGLEGPKGEVGAPGSKGEAGPTGPMGAMGPLGPR-GMP 341
Query: 190 HTSFRINPYADSLGKPDYPGADIQPNSPPFFGEPDYPSAE--------DNQNLPSTWREP 241
R+ P G P GA P P G P + + P+ R P
Sbjct: 342 GERGRLGPQ----GAPGQRGAHGMPGKPGPMGPLGIPGSSGFPGNPGMKGEAGPTGARGP 397
Query: 242 DYSDAENGH-----DYGSSETPKM-----TRGVLSRTSSIQPSFRHRSDDPVGSLWGEND 291
+ + G GS P T G T S S S P GS +
Sbjct: 398 EGPQGQRGETGPPGPVGSPGLPGAIGTDGTPGAKGPTGSPGTSGPPGSAGPPGSPGPQGS 457
Query: 292 Y-PEGIEMASMEMANSYGHSLPGAPGSGYVNPAYVGESGP 330
P+GI PG PG P + GE+GP
Sbjct: 458 TGPQGI------------RGQPGDPGV----PGFKGEAGP 481
Score = 30.8 bits (68), Expect = 6.7
Identities = 44/186 (23%), Positives = 59/186 (31%), Gaps = 24/186 (12%)
Query: 21 GSQNRTQGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPG--SLAEPNYPRSL 78
GSQ +G +G P GP PG P + P +PG L+ P +
Sbjct: 138 GSQG-PRGERGPKGRPGPRGPQGIDGEPGVPGQPGAPGPPGHPSHPGPDGLSRPFSAQMA 196
Query: 79 SNPDYSGTRSNAYSAASRTSP---------------DHPTSLP-EPDYSEFQSHPYHRAS 122
+ SG S P PT P EP R
Sbjct: 197 GLDEKSGLGSQVGLMPGSVGPVGPRGPQGLQGQQGGAGPTGPPGEPGDPGPMGPIGSRGP 256
Query: 123 SRQPDYPGSQRNPDFAGSSSSGNYAGSRTHPDHFGSLEPDYPGAQSNSDH---PGPRANL 179
P PG P G+ +AGS G+ P PG + + H GP+ +
Sbjct: 257 EGPPGKPGEDGEPGRNGNPGEVGFAGSPGARGFPGA--PGLPGLKGHRGHKGLEGPKGEV 314
Query: 180 NHPGSR 185
PGS+
Sbjct: 315 GAPGSK 320
Score = 30.4 bits (67), Expect = 8.7
Identities = 35/144 (24%), Positives = 45/144 (31%), Gaps = 23/144 (15%)
Query: 33 QGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSLSNPDYSGTRSNAYS 92
+G P +PGP P G P P PG + P + P G N
Sbjct: 1004 RGMPGLPGPAGTPGKVG----PTGATGDKGP--PGPVGPPGSNGPVGEPGPEGPAGND-- 1055
Query: 93 AASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQRNPDFAGSSSSGNYAGSRTH 152
+P ++ E R PGSQ P G + AG R
Sbjct: 1056 ----GTPGRDGAVGERG---------DRGDPGPAGLPGSQGAPGTPGPVGAPGDAGQRGD 1102
Query: 153 PDHFGSLEPDYPGAQSNSDHPGPR 176
P G + P PG PGP+
Sbjct: 1103 PGSRGPIGP--PGRAGKRGLPGPQ 1124
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 43.9 bits (102), Expect = 8e-04
Identities = 80/363 (22%), Positives = 123/363 (33%), Gaps = 63/363 (17%)
Query: 14 PDYPDYSGSQNRTQGYLKTQGYPDVPGPLNNPD----YPGTRSNPYSVASRTRPDYP--- 66
P P + R Q Y T Y GP + P YPG PY S+T YP
Sbjct: 380 PSSPMDQMGKMRPQPYGGTNPYSQQQGPPSGPQQGHGYPG---QPYG--SQTPQRYPMTM 434
Query: 67 -----GSLAEPNYPRSLSNPDYSGTRSNAYSAASRTSPDHPTSLPEPDYSE--FQSHPYH 119
++ +Y + + P Y + Y +T P + P P + + P
Sbjct: 435 QGRAQSAMGGLSYTQQI--PPYGQQGPSGYGQQGQT-PYYNQQSPHPQQQQPPYSQQPPS 491
Query: 120 RASSRQPDYPGSQRNPDFAGSSSSGNYAGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANL 179
+ QP Y ++ SS Y+ + P H S P YP QS +
Sbjct: 492 QTPHAQPSYQQQPQSQPPQLQSSQPPYSQQPSQPPHQQSPAP-YPSQQSTTQ-------- 542
Query: 180 NHPGSRKNLEHTSFRINPYADSLGKPDYPGADIQPNSPPFFG-EPDYPSAEDNQNLPSTW 238
HP S+ PY+ + Y Q +P + YP + Q+ + +
Sbjct: 543 QHPQSQP----------PYSQPQAQSPYQQQQPQQPAPSTLSQQAAYPQPQSQQSQQTAY 592
Query: 239 RE----PDYSDAENGHDYGSSETPKMTR----------GVLSRTSSIQPSFRHRSDDPVG 284
+ P +++ +S P MT + SR SS+ D P+G
Sbjct: 593 SQQRFPPPQELSQDSFGSQASSAPSMTSSKGGQEDMNLSLQSRPSSLPDLSGSIDDLPMG 652
Query: 285 S--LWGENDYPEGIEMASMEMANS-----YGHSLPGAPGSGYVNPAYVGESGPVHAYGNP 337
+ GI + E +N H+ P PG +P+ VG V +
Sbjct: 653 TEGALSPGVSTSGISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSG 712
Query: 338 PLS 340
PLS
Sbjct: 713 PLS 715
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 43.9 bits (102), Expect = 8e-04
Identities = 80/363 (22%), Positives = 123/363 (33%), Gaps = 63/363 (17%)
Query: 14 PDYPDYSGSQNRTQGYLKTQGYPDVPGPLNNPD----YPGTRSNPYSVASRTRPDYP--- 66
P P + R Q Y T Y GP + P YPG PY S+T YP
Sbjct: 380 PSSPMDQMGKMRPQPYGGTNPYSQQQGPPSGPQQGHGYPG---QPYG--SQTPQRYPMTM 434
Query: 67 -----GSLAEPNYPRSLSNPDYSGTRSNAYSAASRTSPDHPTSLPEPDYSE--FQSHPYH 119
++ +Y + + P Y + Y +T P + P P + + P
Sbjct: 435 QGRAQSAMGGLSYTQQI--PPYGQQGPSGYGQQGQT-PYYNQQSPHPQQQQPPYSQQPPS 491
Query: 120 RASSRQPDYPGSQRNPDFAGSSSSGNYAGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANL 179
+ QP Y ++ SS Y+ + P H S P YP QS +
Sbjct: 492 QTPHAQPSYQQQPQSQPPQLQSSQPPYSQQPSQPPHQQSPAP-YPSQQSTTQ-------- 542
Query: 180 NHPGSRKNLEHTSFRINPYADSLGKPDYPGADIQPNSPPFFG-EPDYPSAEDNQNLPSTW 238
HP S+ PY+ + Y Q +P + YP + Q+ + +
Sbjct: 543 QHPQSQP----------PYSQPQAQSPYQQQQPQQPAPSTLSQQAAYPQPQSQQSQQTAY 592
Query: 239 RE----PDYSDAENGHDYGSSETPKMTR----------GVLSRTSSIQPSFRHRSDDPVG 284
+ P +++ +S P MT + SR SS+ D P+G
Sbjct: 593 SQQRFPPPQELSQDSFGSQASSAPSMTSSKGGQEDMNLSLQSRPSSLPDLSGSIDDLPMG 652
Query: 285 S--LWGENDYPEGIEMASMEMANS-----YGHSLPGAPGSGYVNPAYVGESGPVHAYGNP 337
+ GI + E +N H+ P PG +P+ VG V +
Sbjct: 653 TEGALSPGVSTSGISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSG 712
Query: 338 PLS 340
PLS
Sbjct: 713 PLS 715
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.138 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,089,732
Number of Sequences: 37866
Number of extensions: 2124981
Number of successful extensions: 9016
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 217
Number of HSP's that attempted gapping in prelim test: 6659
Number of HSP's gapped (non-prelim): 1424
length of query: 1006
length of database: 18,247,518
effective HSP length: 112
effective length of query: 894
effective length of database: 14,006,526
effective search space: 12521834244
effective search space used: 12521834244
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.