Guide to the Human Genome
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Name: TMC5 Sequence: fasta or formatted (1006aa) NCBI GI: 157426860
Description:

transmembrane channel-like 5 isoform a

Referenced in:

Auditory and Vestibular Functions

Other entries for this name:
alt prot [948aa] transmembrane channel-like 5 isoform b
alt prot [760aa] transmembrane channel-like 5 isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         47           2
 C cysteine            1.6         16           2
 D aspartate           3.9         39           2
 E glutamate           4.9         49           2
 F phenylalanine       5.9         59           3
 G glycine             6.4         64           2
 H histidine           2.4         24           1
 I isoleucine          7.0         70           3
 K lysine              3.8         38           2
 L leucine             9.8         99           3
 M methionine          2.5         25           2
 N asparagine          5.7         57           2
 P proline             6.7         67           2
 Q glutamine           3.7         37           2
 R arginine            5.7         57           2
 S serine              9.8         99           4
 T threonine           4.9         49           2
 V valine              3.9         39           2
 W tryptophan          1.7         17           1
 Y tyrosine            5.4         54           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane channel-like 5 isoform a 
TMC5                  0.891   transmembrane channel-like 5 isoform b 
TMC5                  0.635   transmembrane channel-like 5 isoform c 
TMC6                  0.184   transmembrane channel-like 6 
TMC6                  0.184   transmembrane channel-like 6 
TMC7                  0.102   transmembrane channel-like 7 isoform a 
TMC7                  0.099   transmembrane channel-like 7 isoform b 
TMC8                  0.084   transmembrane channel-like 8 
TMC4                  0.077   transmembrane channel-like 4 isoform 2 
TMC4                  0.077   transmembrane channel-like 4 isoform 1 
TMC1                  0.055   transmembrane channel-like 1 
TMC2                  0.053   transmembrane cochlear-expressed protein 2 
TMC3                  0.038   transmembrane channel-like 3 
COL16A1               0.014   alpha 1 type XVI collagen precursor 
COL5A3                0.013   collagen, type V, alpha 3 preproprotein 
COL4A5                0.012   type IV collagen alpha 5 isoform 2 precursor 
COL4A5                0.012   type IV collagen alpha 5 isoform 1 precursor 
COL4A5                0.012   type IV collagen alpha 5 isoform 3 precursor 
COL4A3                0.010   alpha 3 type IV collagen isoform 5 precursor 
COL4A3                0.010   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.010   alpha 3 type IV collagen isoform 2 precursor 
COL4A3                0.010   alpha 3 type IV collagen isoform 1 precursor 
COL18A1               0.010   alpha 1 type XVIII collagen isoform 3 precursor [Ho...
COL18A1               0.010   alpha 1 type XVIII collagen isoform 2 precursor [Ho...
COL18A1               0.010   alpha 1 type XVIII collagen isoform 1 precursor [Ho...
COL4A1                0.010   alpha 1 type IV collagen preproprotein 
COL1A1                0.009   alpha 1 type I collagen preproprotein 
COL5A2                0.009   alpha 2 type V collagen preproprotein 
ARID1A                0.009   AT rich interactive domain 1A isoform a 
ARID1A                0.009   AT rich interactive domain 1A isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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