TMC5 6245

Name: TMC5	Sequence: fasta or formatted (1006aa)		NCBI GI: 157426860
Description: transmembrane channel-like 5 isoform a		Referenced in: Auditory and Vestibular Functions
Other entries for this name: alt prot [948aa] transmembrane channel-like 5 isoform b alt prot [760aa] transmembrane channel-like 5 isoform c
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.7 47 2 C cysteine 1.6 16 2 D aspartate 3.9 39 2 E glutamate 4.9 49 2 F phenylalanine 5.9 59 3 G glycine 6.4 64 2 H histidine 2.4 24 1 I isoleucine 7.0 70 3 K lysine 3.8 38 2 L leucine 9.8 99 3 M methionine 2.5 25 2 N asparagine 5.7 57 2 P proline 6.7 67 2 Q glutamine 3.7 37 2 R arginine 5.7 57 2 S serine 9.8 99 4 T threonine 4.9 49 2 V valine 3.9 39 2 W tryptophan 1.7 17 1 Y tyrosine 5.4 54 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 transmembrane channel-like 5 isoform a TMC5 0.891 transmembrane channel-like 5 isoform b TMC5 0.635 transmembrane channel-like 5 isoform c TMC6 0.184 transmembrane channel-like 6 TMC6 0.184 transmembrane channel-like 6 TMC7 0.102 transmembrane channel-like 7 isoform a TMC7 0.099 transmembrane channel-like 7 isoform b TMC8 0.084 transmembrane channel-like 8 TMC4 0.077 transmembrane channel-like 4 isoform 2 TMC4 0.077 transmembrane channel-like 4 isoform 1 TMC1 0.055 transmembrane channel-like 1 TMC2 0.053 transmembrane cochlear-expressed protein 2 TMC3 0.038 transmembrane channel-like 3 COL16A1 0.014 alpha 1 type XVI collagen precursor COL5A3 0.013 collagen, type V, alpha 3 preproprotein COL4A5 0.012 type IV collagen alpha 5 isoform 2 precursor COL4A5 0.012 type IV collagen alpha 5 isoform 1 precursor COL4A5 0.012 type IV collagen alpha 5 isoform 3 precursor COL4A3 0.010 alpha 3 type IV collagen isoform 5 precursor COL4A3 0.010 alpha 3 type IV collagen isoform 4 precursor COL4A3 0.010 alpha 3 type IV collagen isoform 2 precursor COL4A3 0.010 alpha 3 type IV collagen isoform 1 precursor COL18A1 0.010 alpha 1 type XVIII collagen isoform 3 precursor [Ho... COL18A1 0.010 alpha 1 type XVIII collagen isoform 2 precursor [Ho... COL18A1 0.010 alpha 1 type XVIII collagen isoform 1 precursor [Ho... COL4A1 0.010 alpha 1 type IV collagen preproprotein COL1A1 0.009 alpha 1 type I collagen preproprotein COL5A2 0.009 alpha 2 type V collagen preproprotein ARID1A 0.009 AT rich interactive domain 1A isoform a ARID1A 0.009 AT rich interactive domain 1A isoform b Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.