Guide to the Human Genome
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Name: TMC6 Sequence: fasta or formatted (805aa) NCBI GI: 187608791
Description:

transmembrane channel-like 6

Referenced in:

Auditory and Vestibular Functions
Skin and Related Tissues

Other entries for this name:
alt mRNA [805aa] transmembrane channel-like 6
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         62           3
 C cysteine            3.0         24           2
 D aspartate           2.4         19           1
 E glutamate           5.6         45           4
 F phenylalanine       4.0         32           2
 G glycine             7.0         56           2
 H histidine           1.9         15           1
 I isoleucine          3.7         30           2
 K lysine              3.0         24           2
 L leucine            15.7        126           6
 M methionine          1.9         15           1
 N asparagine          1.9         15           1
 P proline             5.3         43           2
 Q glutamine           5.3         43           2
 R arginine            7.1         57           3
 S serine              7.0         56           2
 T threonine           5.0         40           2
 V valine              7.6         61           2
 W tryptophan          2.0         16           1
 Y tyrosine            3.2         26           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane channel-like 6 
TMC6                  1.000   transmembrane channel-like 6 
TMC5                  0.237   transmembrane channel-like 5 isoform c 
TMC5                  0.237   transmembrane channel-like 5 isoform a 
TMC5                  0.197   transmembrane channel-like 5 isoform b 
TMC7                  0.109   transmembrane channel-like 7 isoform a 
TMC7                  0.106   transmembrane channel-like 7 isoform b 
TMC8                  0.092   transmembrane channel-like 8 
TMC4                  0.078   transmembrane channel-like 4 isoform 1 
TMC4                  0.078   transmembrane channel-like 4 isoform 2 
TMC1                  0.068   transmembrane channel-like 1 
TMC2                  0.063   transmembrane cochlear-expressed protein 2 
TMC3                  0.045   transmembrane channel-like 3 
SLCO5A1               0.005   solute carrier organic anion transporter family, me...
SLCO5A1               0.005   solute carrier organic anion transporter family, me...
GPR114                0.004   G protein-coupled receptor 114 
ADRA2B                0.004   alpha-2B-adrenergic receptor 
ERBB2IP               0.004   ERBB2 interacting protein isoform 7 
ERBB2IP               0.004   ERBB2 interacting protein isoform 2 
UBAP2                 0.004   ubiquitin associated protein 2 
PRDM9                 0.004   PR domain containing 9 
CALCOCO1              0.004   coiled-coil transcriptional coactivator isoform 2 [...
CALCOCO1              0.004   coiled-coil transcriptional coactivator isoform 1 [H...
HOMER3                0.003   Homer, neuronal immediate early gene, 3 isoform 3 [...
HOMER3                0.003   Homer, neuronal immediate early gene, 3 isoform 1 [...
HOMER3                0.003   Homer, neuronal immediate early gene, 3 isoform 1 [...
SLC44A2               0.003   solute carrier family 44, member 2 isoform 1 
SLC44A2               0.003   solute carrier family 44, member 2 isoform 2 
LACE1                 0.003   lactation elevated 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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