TMC3 2642

Name: TMC3	Sequence: fasta or formatted (1100aa)		NCBI GI: 122937502
Description: transmembrane channel-like 3		Referenced in: Auditory and Vestibular Functions
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.6 73 2 C cysteine 1.4 15 1 D aspartate 3.8 42 2 E glutamate 5.8 64 5 F phenylalanine 4.7 52 2 G glycine 4.6 51 2 H histidine 2.2 24 1 I isoleucine 6.0 66 2 K lysine 5.2 57 3 L leucine 10.0 110 3 M methionine 2.4 26 1 N asparagine 4.1 45 2 P proline 5.7 63 2 Q glutamine 5.0 55 2 R arginine 6.9 76 2 S serine 9.6 106 3 T threonine 4.7 52 2 V valine 5.5 60 3 W tryptophan 1.8 20 1 Y tyrosine 3.9 43 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 transmembrane channel-like 3 TMC2 0.280 transmembrane cochlear-expressed protein 2 TMC1 0.252 transmembrane channel-like 1 TMC7 0.055 transmembrane channel-like 7 isoform b TMC7 0.055 transmembrane channel-like 7 isoform a TMC4 0.044 transmembrane channel-like 4 isoform 2 TMC4 0.044 transmembrane channel-like 4 isoform 1 TMC8 0.038 transmembrane channel-like 8 TMC5 0.036 transmembrane channel-like 5 isoform a TMC5 0.036 transmembrane channel-like 5 isoform c TMC6 0.033 transmembrane channel-like 6 TMC6 0.033 transmembrane channel-like 6 TMC5 0.026 transmembrane channel-like 5 isoform b AMOTL2 0.009 angiomotin like 2 PALMD 0.006 palmdelphin CDKL5 0.006 cyclin-dependent kinase-like 5 CDKL5 0.006 cyclin-dependent kinase-like 5 CLEC16A 0.006 C-type lectin domain family 16, member A PPIG 0.006 peptidylprolyl isomerase G SRRM2 0.006 splicing coactivator subunit SRm300 AFF1 0.005 myeloid/lymphoid or mixed-lineage leukemia trithorax ... LOC100170229 0.005 hypothetical protein LOC100170229 PRKDC 0.004 protein kinase, DNA-activated, catalytic polypeptid... PRKDC 0.004 protein kinase, DNA-activated, catalytic polypeptide... LOC731751 0.004 PREDICTED: similar to protein kinase, DNA-activated... SRRM1 0.004 serine/arginine repetitive matrix 1 RTL1 0.004 retrotransposon-like 1 CHEK2 0.004 protein kinase CHK2 isoform c CHEK2 0.004 protein kinase CHK2 isoform b CHEK2 0.004 protein kinase CHK2 isoform a Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.