Guide to the Human Genome
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Name: NKX2-5 Sequence: fasta or formatted (324aa) NCBI GI: 4758090
Description:

NK2 transcription factor related, locus 5

Referenced in:

Homeobox and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.0         52           3
 C cysteine            2.2          7           1
 D aspartate           3.1         10           1
 E glutamate           5.2         17           1
 F phenylalanine       3.1         10           1
 G glycine             6.2         20           2
 H histidine           0.3          1           1
 I isoleucine          1.5          5           1
 K lysine              4.6         15           2
 L leucine             8.6         28           1
 M methionine          0.6          2           1
 N asparagine          3.4         11           3
 P proline            12.7         41           7
 Q glutamine           5.2         17           3
 R arginine            7.7         25           4
 S serine              6.5         21           2
 T threonine           3.1         10           1
 V valine              4.6         15           1
 W tryptophan          0.6          2           1
 Y tyrosine            4.6         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   NK2 transcription factor related, locus 5 
NKX2-3                0.341   NK2 transcription factor related, locus 3 
NKX2-6                0.278   NK2 transcription factor related, locus 6 
NKX2-4                0.187   NK2 homeobox 4 
NKX2-8                0.178   NK2 homeobox 8 
NKX2-2                0.171   NK2 transcription factor related, locus 2 
NKX2-1                0.165   thyroid transcription factor 1 isoform 1 
NKX2-1                0.165   thyroid transcription factor 1 isoform 2 
NKX3-2                0.129   NK3 homeobox 2 
HMX1                  0.112   homeo box (H6 family) 1 
MSX1                  0.097   msh homeobox 1 
NKX3-1                0.090   NK3 homeobox 1 
LBX2                  0.090   ladybird homeobox 2 
HMX3                  0.090   H6 family homeobox 3 
LBX1                  0.090   ladybird homeobox 1 
MSX2                  0.090   msh homeobox 2 
HMX2                  0.086   H6 family homeobox 2 
DLX4                  0.082   distal-less homeobox 4 isoform a 
TLX2                  0.082   T-cell leukemia homeobox 2 
DLX3                  0.080   distal-less homeobox 3 
BSX                   0.080   brain specific homeobox 
RAX                   0.080   retina and anterior neural fold homeobox 
PDX1                  0.079   pancreatic and duodenal homeobox 1 
DLX1                  0.079   distal-less homeobox 1 isoform 1 
NKX1-1                0.079   PREDICTED: NK1 homeobox 1 
TLX3                  0.079   T-cell leukemia homeobox 3 
HOXA3                 0.077   homeobox A3 isoform a 
HOXA3                 0.077   homeobox A3 isoform a 
NKX1-1                0.077   PREDICTED: HPX-153 homeobox 
DLX2                  0.077   distal-less homeobox 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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