HOXD1 3138

Name: HOXD1	Sequence: fasta or formatted (328aa)		NCBI GI: 13375632
Description: homeobox D1		Referenced in: HOX Genes
Composition: Amino acid Percentage Count Longest homopolymer A alanine 14.6 48 4 C cysteine 1.8 6 1 D aspartate 3.0 10 2 E glutamate 4.0 13 1 F phenylalanine 5.2 17 1 G glycine 10.1 33 3 H histidine 1.5 5 1 I isoleucine 1.8 6 1 K lysine 5.2 17 2 L leucine 7.6 25 2 M methionine 0.9 3 1 N asparagine 2.4 8 1 P proline 11.0 36 3 Q glutamine 3.7 12 1 R arginine 4.3 14 2 S serine 10.4 34 3 T threonine 4.3 14 2 V valine 4.3 14 1 W tryptophan 0.6 2 1 Y tyrosine 3.4 11 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 homeobox D1 HOXA1 0.207 homeobox A1 isoform a HOXB1 0.199 homeobox B1 HOXD3 0.132 homeobox D3 MNX1 0.116 homeo box HB9 HOXA3 0.115 homeobox A3 isoform a HOXA3 0.115 homeobox A3 isoform a HOXD4 0.106 homeobox D4 HOXC5 0.106 homeobox C5 HOXB2 0.106 homeobox B2 HOXA10 0.101 homeobox A10 isoform a HOXC4 0.101 homeobox C4 HOXC4 0.101 homeobox C4 HOXA2 0.101 homeobox A2 HOXA3 0.098 homeobox A3 isoform b HOXA4 0.098 homeobox A4 HOXA5 0.096 homeobox A5 HOXB3 0.093 homeobox B3 CDX1 0.092 caudal type homeobox 1 HOXB6 0.092 homeobox B6 PDX1 0.090 pancreatic and duodenal homeobox 1 HOXA7 0.090 homeobox A7 HOXB4 0.090 homeobox B4 HOXB5 0.089 homeobox B5 TLX1 0.087 T-cell leukemia homeobox 1 HOXC6 0.087 homeobox C6 isoform 2 HOXC6 0.087 homeobox C6 isoform 1 CDX2 0.085 caudal type homeobox 2 HOXD9 0.085 homeobox D9 HOXA6 0.084 homeobox A6 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.