Guide to the Human Genome
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Name: BSX Sequence: fasta or formatted (233aa) NCBI GI: 147901462
Description:

brain specific homeobox

Referenced in:

Homeobox and Related Proteins
Hypothalamus

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         18           2
 C cysteine            0.4          1           1
 D aspartate           4.3         10           1
 E glutamate           7.7         18           1
 F phenylalanine       4.3         10           2
 G glycine             5.6         13           1
 H histidine           6.4         15           3
 I isoleucine          1.7          4           1
 K lysine              5.2         12           2
 L leucine            11.6         27           2
 M methionine          1.7          4           1
 N asparagine          1.3          3           1
 P proline            12.0         28           1
 Q glutamine           3.4          8           1
 R arginine            6.4         15           3
 S serine              8.6         20           2
 T threonine           5.6         13           2
 V valine              3.9          9           1
 W tryptophan          0.4          1           1
 Y tyrosine            1.7          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   brain specific homeobox 
BARX1                 0.153   BarH-like homeobox 1 
BARX2                 0.144   BarH-like homeobox 2 
MNX1                  0.142   homeo box HB9 
HOXB2                 0.127   homeobox B2 
MSX1                  0.124   msh homeobox 1 
HLX                   0.124   H2.0-like homeobox 
HHEX                  0.122   hematopoietically expressed homeobox 
HOXB3                 0.122   homeobox B3 
DLX5                  0.120   distal-less homeobox 5 
GSX2                  0.120   GS homeobox 2 
HOXB1                 0.120   homeobox B1 
HMX3                  0.120   H6 family homeobox 3 
GSX1                  0.120   GS homeobox 1 
DLX3                  0.118   distal-less homeobox 3 
BARHL2                0.118   BarH-like homeobox 2 
HOXA2                 0.118   homeobox A2 
DLX2                  0.118   distal-less homeobox 2 
BARHL1                0.118   BarH-like homeobox 1 
HMX2                  0.114   H6 family homeobox 2 
NKX1-2                0.114   NK1 homeobox 2 
DLX1                  0.114   distal-less homeobox 1 isoform 1 
NKX1-2                0.114   PREDICTED: NK1 homeobox 2 
NKX1-2                0.114   PREDICTED: NK1 homeobox 2 
NKX1-2                0.114   PREDICTED: NK1 homeobox 2 
NKX2-3                0.114   NK2 transcription factor related, locus 3 
NKX2-6                0.114   NK2 transcription factor related, locus 6 
NKX2-5                0.111   NK2 transcription factor related, locus 5 
DLX4                  0.111   distal-less homeobox 4 isoform a 
HMX1                  0.111   homeo box (H6 family) 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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