Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 157412270
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|157412270 heterogeneous nuclear ribonucleoprotein M isoform
b [Homo sapiens]
(691 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|157412270 heterogeneous nuclear ribonucleoprotein M isoform b... 1389 0.0
gi|14141152 heterogeneous nuclear ribonucleoprotein M isoform a ... 1369 0.0
gi|33620747 myelin expression factor 2 [Homo sapiens] 442 e-124
gi|18201888 poly(A) binding protein, cytoplasmic 5 [Homo sapiens] 83 1e-15
gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo s... 82 1e-15
gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Ho... 82 2e-15
gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo... 82 2e-15
gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Ho... 82 2e-15
gi|168229150 poly(A) binding protein, cytoplasmic 4-like [Homo s... 81 4e-15
gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens] 80 5e-15
gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens] 79 2e-14
gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi... 77 7e-14
gi|55956788 nucleolin [Homo sapiens] 70 5e-12
gi|7661952 squamous cell carcinoma antigen recognized by T cells... 67 7e-11
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 65 2e-10
gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a ... 65 3e-10
gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b ... 62 2e-09
gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isofor... 60 5e-09
gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform... 60 5e-09
gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c ... 60 7e-09
gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens] 60 9e-09
gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens] 60 9e-09
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens] 59 1e-08
gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 59 1e-08
gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 59 1e-08
gi|115511032 ELAV (embryonic lethal, abnormal vision, Drosophila... 58 3e-08
gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a ... 58 3e-08
gi|20373175 musashi 2 isoform a [Homo sapiens] 58 3e-08
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap... 58 3e-08
gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d ... 57 4e-08
>gi|157412270 heterogeneous nuclear ribonucleoprotein M isoform b
[Homo sapiens]
Length = 691
Score = 1389 bits (3594), Expect = 0.0
Identities = 691/691 (100%), Positives = 691/691 (100%)
Query: 1 MAAGVEAAAEVAATEIKMEEESGAPGVPSGNGAPGPKGEGERPAQNEKRKEKNIKRGGNR 60
MAAGVEAAAEVAATEIKMEEESGAPGVPSGNGAPGPKGEGERPAQNEKRKEKNIKRGGNR
Sbjct: 1 MAAGVEAAAEVAATEIKMEEESGAPGVPSGNGAPGPKGEGERPAQNEKRKEKNIKRGGNR 60
Query: 61 FEPYANPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFK 120
FEPYANPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFK
Sbjct: 61 FEPYANPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFK 120
Query: 121 MEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHARRAMQKAGRLGSTVFVANLDYKVGWKK 180
MEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHARRAMQKAGRLGSTVFVANLDYKVGWKK
Sbjct: 121 MEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHARRAMQKAGRLGSTVFVANLDYKVGWKK 180
Query: 181 LKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 240
LKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD
Sbjct: 181 LKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 240
Query: 241 ERALPKGDFFPPERPQQLPHGLGGIGMGLGPGGQPIDANHLNKGIGMGNIGPAGMGMEGI 300
ERALPKGDFFPPERPQQLPHGLGGIGMGLGPGGQPIDANHLNKGIGMGNIGPAGMGMEGI
Sbjct: 241 ERALPKGDFFPPERPQQLPHGLGGIGMGLGPGGQPIDANHLNKGIGMGNIGPAGMGMEGI 300
Query: 301 GFGINKMGGMEGPFGGGMENMGRFGSGMNMGRINEILSNALKRGEIIAKQGGGGGGGSVP 360
GFGINKMGGMEGPFGGGMENMGRFGSGMNMGRINEILSNALKRGEIIAKQGGGGGGGSVP
Sbjct: 301 GFGINKMGGMEGPFGGGMENMGRFGSGMNMGRINEILSNALKRGEIIAKQGGGGGGGSVP 360
Query: 361 GIERMGPGIDRLGGAGMERMGAGLGHGMDRVGSEIERMGLVMDRMGSVERMGSGIERMGP 420
GIERMGPGIDRLGGAGMERMGAGLGHGMDRVGSEIERMGLVMDRMGSVERMGSGIERMGP
Sbjct: 361 GIERMGPGIDRLGGAGMERMGAGLGHGMDRVGSEIERMGLVMDRMGSVERMGSGIERMGP 420
Query: 421 LGLDHMASSIERMGQTMERIGSGVERMGAGMGFGLERMAAPIDRVGQTIERMGSGVERMG 480
LGLDHMASSIERMGQTMERIGSGVERMGAGMGFGLERMAAPIDRVGQTIERMGSGVERMG
Sbjct: 421 LGLDHMASSIERMGQTMERIGSGVERMGAGMGFGLERMAAPIDRVGQTIERMGSGVERMG 480
Query: 481 PAIERMGLSMERMVPAGMGAGLERMGPVMDRMATGLERMGANNLERMGLERMGANSLERM 540
PAIERMGLSMERMVPAGMGAGLERMGPVMDRMATGLERMGANNLERMGLERMGANSLERM
Sbjct: 481 PAIERMGLSMERMVPAGMGAGLERMGPVMDRMATGLERMGANNLERMGLERMGANSLERM 540
Query: 541 GLERMGANSLERMGPAMGPALGAGIERMGLAMGGGGGASFDRAIEMERGNFGGSFAGSFG 600
GLERMGANSLERMGPAMGPALGAGIERMGLAMGGGGGASFDRAIEMERGNFGGSFAGSFG
Sbjct: 541 GLERMGANSLERMGPAMGPALGAGIERMGLAMGGGGGASFDRAIEMERGNFGGSFAGSFG 600
Query: 601 GAGGHAPGVARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKF 660
GAGGHAPGVARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKF
Sbjct: 601 GAGGHAPGVARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKF 660
Query: 661 ESPEVAERACRMMNGMKLSGREIDVRIDRNA 691
ESPEVAERACRMMNGMKLSGREIDVRIDRNA
Sbjct: 661 ESPEVAERACRMMNGMKLSGREIDVRIDRNA 691
>gi|14141152 heterogeneous nuclear ribonucleoprotein M isoform a
[Homo sapiens]
Length = 730
Score = 1369 bits (3544), Expect = 0.0
Identities = 691/730 (94%), Positives = 691/730 (94%), Gaps = 39/730 (5%)
Query: 1 MAAGVEAAAEVAATEIKMEEESGAPGVPSGNGAPGPKGEGERPAQNEKRKEKNIKRGGNR 60
MAAGVEAAAEVAATEIKMEEESGAPGVPSGNGAPGPKGEGERPAQNEKRKEKNIKRGGNR
Sbjct: 1 MAAGVEAAAEVAATEIKMEEESGAPGVPSGNGAPGPKGEGERPAQNEKRKEKNIKRGGNR 60
Query: 61 FEPYANPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFK 120
FEPYANPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFK
Sbjct: 61 FEPYANPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFK 120
Query: 121 MEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHARRAMQK--------------------- 159
MEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHARRAMQK
Sbjct: 121 MEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHARRAMQKVMATTGGMGMGPGGPGMITIP 180
Query: 160 ------------------AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD 201
AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD
Sbjct: 181 PSILNNPNIPNEIIHALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD 240
Query: 202 GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERALPKGDFFPPERPQQLPHG 261
GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERALPKGDFFPPERPQQLPHG
Sbjct: 241 GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERALPKGDFFPPERPQQLPHG 300
Query: 262 LGGIGMGLGPGGQPIDANHLNKGIGMGNIGPAGMGMEGIGFGINKMGGMEGPFGGGMENM 321
LGGIGMGLGPGGQPIDANHLNKGIGMGNIGPAGMGMEGIGFGINKMGGMEGPFGGGMENM
Sbjct: 301 LGGIGMGLGPGGQPIDANHLNKGIGMGNIGPAGMGMEGIGFGINKMGGMEGPFGGGMENM 360
Query: 322 GRFGSGMNMGRINEILSNALKRGEIIAKQGGGGGGGSVPGIERMGPGIDRLGGAGMERMG 381
GRFGSGMNMGRINEILSNALKRGEIIAKQGGGGGGGSVPGIERMGPGIDRLGGAGMERMG
Sbjct: 361 GRFGSGMNMGRINEILSNALKRGEIIAKQGGGGGGGSVPGIERMGPGIDRLGGAGMERMG 420
Query: 382 AGLGHGMDRVGSEIERMGLVMDRMGSVERMGSGIERMGPLGLDHMASSIERMGQTMERIG 441
AGLGHGMDRVGSEIERMGLVMDRMGSVERMGSGIERMGPLGLDHMASSIERMGQTMERIG
Sbjct: 421 AGLGHGMDRVGSEIERMGLVMDRMGSVERMGSGIERMGPLGLDHMASSIERMGQTMERIG 480
Query: 442 SGVERMGAGMGFGLERMAAPIDRVGQTIERMGSGVERMGPAIERMGLSMERMVPAGMGAG 501
SGVERMGAGMGFGLERMAAPIDRVGQTIERMGSGVERMGPAIERMGLSMERMVPAGMGAG
Sbjct: 481 SGVERMGAGMGFGLERMAAPIDRVGQTIERMGSGVERMGPAIERMGLSMERMVPAGMGAG 540
Query: 502 LERMGPVMDRMATGLERMGANNLERMGLERMGANSLERMGLERMGANSLERMGPAMGPAL 561
LERMGPVMDRMATGLERMGANNLERMGLERMGANSLERMGLERMGANSLERMGPAMGPAL
Sbjct: 541 LERMGPVMDRMATGLERMGANNLERMGLERMGANSLERMGLERMGANSLERMGPAMGPAL 600
Query: 562 GAGIERMGLAMGGGGGASFDRAIEMERGNFGGSFAGSFGGAGGHAPGVARKACQIFVRNL 621
GAGIERMGLAMGGGGGASFDRAIEMERGNFGGSFAGSFGGAGGHAPGVARKACQIFVRNL
Sbjct: 601 GAGIERMGLAMGGGGGASFDRAIEMERGNFGGSFAGSFGGAGGHAPGVARKACQIFVRNL 660
Query: 622 PFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGR 681
PFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGR
Sbjct: 661 PFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGR 720
Query: 682 EIDVRIDRNA 691
EIDVRIDRNA
Sbjct: 721 EIDVRIDRNA 730
>gi|33620747 myelin expression factor 2 [Homo sapiens]
Length = 600
Score = 442 bits (1138), Expect = e-124
Identities = 297/710 (41%), Positives = 370/710 (52%), Gaps = 213/710 (30%)
Query: 35 GPKGEGERPAQNEKR--KEKNI-KRGGNRFEPYANPTK----------RYRAFITNIPFD 81
G K E + A+ EK KEK+ + NRF PY+ R R FI+NIP+D
Sbjct: 51 GVKMENDESAKEEKSDLKEKSTGSKKANRFHPYSKDKNSGTGEKKGPNRNRVFISNIPYD 110
Query: 82 VKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRP 141
+KWQ++KDL++EKVGEVTYVEL DAEGKSRGC VVEFK EE +KKA E +NK+ LSGRP
Sbjct: 111 MKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRP 170
Query: 142 LKVKEDPDGEHARRAMQK---------------------------------------AGR 162
L +KEDPDGE+ARRA+Q+ AGR
Sbjct: 171 LNIKEDPDGENARRALQRTGGSFPGGHVPDMGSGLMNLPPSILNNPNIPPEVISNLQAGR 230
Query: 163 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAI 222
LGST+FVANLD+KVGWKKLKEVFS+AG V RADI EDKDGKSRG+GTVTFEQ+IEAVQAI
Sbjct: 231 LGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAI 290
Query: 223 SMFNGQLLFDRPMHVKMDERALPKGDFFPPE-RPQQLPHGLGGIGMGLGPGGQPIDANHL 281
SMFNGQ LFDRPMHVKMD++++P ++ + + QLP GLGGI
Sbjct: 291 SMFNGQFLFDRPMHVKMDDKSVPHEEYRSHDGKTPQLPRGLGGI---------------- 334
Query: 282 NKGIGMGNIGPAGMGMEGIGFGINKMGGMEGPFGGGMENMGRFGSGMNMGRINEILSNAL 341
GMG +GP G + I GG M N+G
Sbjct: 335 ----GMG-LGPGGQPISASQLNI----------GGVMGNLG------------------- 360
Query: 342 KRGEIIAKQGGGGGGGSVPGIERMGPGIDRLGGAGMERMGAGLGHGMDRVGSEIERMGLV 401
PG G G+D G GM R+G G+G G G E
Sbjct: 361 ------------------PG----GMGMDGPGFGGMNRIGGGIGFG----GLE------A 388
Query: 402 MDRMGSVERMGSGIERMGPLGLDHMASSIERMGQTMERIGSGVERMGAGMGFGLERMAAP 461
M+ MG G+ RMG L M SS+ER G +G GFG
Sbjct: 389 MNSMGGF----GGVGRMGELYRGAMTSSMER--------DFGRGDIGINRGFG------- 429
Query: 462 IDRVGQTIERMGSGVERMGPAIERMGLSMERMVPAGMGAGLERMGPVMDRMATGLERMGA 521
+ R+GS + +G R+G S V +G+ G+ M V M GL+RM
Sbjct: 430 -----DSFGRLGSAM--IGGFAGRIGSSNMGPVGSGISGGMGSMNSVTGGMGMGLDRM-- 480
Query: 522 NNLERMGLERMGANSLERMGLERMGANSLERMGPAMGPALGAGIERMGLAMGGGGGASFD 581
++S +RMGP G GA +
Sbjct: 481 -------------------------SSSFDRMGP-------------------GIGAILE 496
Query: 582 RAIEMERGNFGGSFAGSFGGAGGHAPGVARKACQIFVRNLPFDFTWKMLKDKFNECGHVL 641
R+I+M+RG G G + K QIFVRNLPFD TW+ LK+KF++CGHV+
Sbjct: 497 RSIDMDRGFLSGPMGS------GMRERIGSKGNQIFVRNLPFDLTWQKLKEKFSQCGHVM 550
Query: 642 YADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNA 691
+A+IKMENGKSKGCG V+F+SPE AE+ACR+MNG+K+SGREIDVR+DRNA
Sbjct: 551 FAEIKMENGKSKGCGTVRFDSPESAEKACRIMNGIKISGREIDVRLDRNA 600
>gi|18201888 poly(A) binding protein, cytoplasmic 5 [Homo sapiens]
Length = 382
Score = 82.8 bits (203), Expect = 1e-15
Identities = 56/178 (31%), Positives = 94/178 (52%), Gaps = 12/178 (6%)
Query: 74 FITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLN 133
F+ NI D+ + LK+L E G V+++ DA GKS+G V ++ E+ +KA L+
Sbjct: 202 FVKNIGDDIDDEKLKELFCE-YGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 134 KHSLSGRPLKV-----KEDPDGEHARR-----AMQKAGRLGSTVFVANLDYKVGWKKLKE 183
S+ G+ L V K + E RR +K+ G +++ NLD + +KLKE
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 184 VFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 241
FS G + RA ++ + G+ +G G V F EA +A+ NG+++ +P+HV + +
Sbjct: 321 EFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 48.1 bits (113), Expect = 3e-05
Identities = 38/152 (25%), Positives = 70/152 (46%), Gaps = 2/152 (1%)
Query: 96 GEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHARR 155
G + +++ D G S+G A V F + +A +N L+ R + V E
Sbjct: 130 GNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAA 188
Query: 156 AMQKAGRLGST-VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQ 214
++ R T VFV N+ + +KLKE+F G ++ D GKS+G G V +E
Sbjct: 189 EVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYET 248
Query: 215 SIEAVQAISMFNGQLLFDRPMHVKMDERALPK 246
A +A+ +G+ + + ++V ++ + +
Sbjct: 249 HEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 280
Score = 45.8 bits (107), Expect = 1e-04
Identities = 25/72 (34%), Positives = 40/72 (55%)
Query: 616 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 675
I+++NL + LK++F+ G + A + ME G+ KG GVV F S E A +A MNG
Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNG 363
Query: 676 MKLSGREIDVRI 687
+ + + V +
Sbjct: 364 RIVGSKPLHVTL 375
Score = 42.0 bits (97), Expect = 0.002
Identities = 41/166 (24%), Positives = 75/166 (45%), Gaps = 20/166 (12%)
Query: 96 GEVTYVELLMDAEGKSR-GCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVK-EDPDGEHA 153
G + + + D +S G V F+ + A +N ++G+P ++ PD
Sbjct: 42 GPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDR-- 99
Query: 154 RRAMQKAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFE 213
++K+G +F+ NLD + + L +FS G ++ ++ D +G S+G V F+
Sbjct: 100 ---LRKSGV--GNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFD 153
Query: 214 QSIEAVQAISMFNGQLLFDRPMHVKMDERALPKGDF-FPPERPQQL 258
A +AI NG V+++ R + G F FP ER ++
Sbjct: 154 SLAAANRAIWHMNG---------VRLNNRQVYVGRFKFPEERAAEV 190
Score = 41.2 bits (95), Expect = 0.003
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 616 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 675
IF++NL + L F+ G++L + ++ SKG V F+S A RA MNG
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNG 167
Query: 676 MKLSGREIDV 685
++L+ R++ V
Sbjct: 168 VRLNNRQVYV 177
Score = 41.2 bits (95), Expect = 0.003
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 616 IFVRNLPFDFTWKMLKDKFNECGHVLYAD-IKMENGKSKGCGVVKFESPEVAERACRMMN 674
+FV+N+ D + LK+ F E G I+ +GKSKG G V++E+ E A++A ++
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 675 GMKLSGREIDV 685
G + G+ + V
Sbjct: 261 GKSIDGKVLYV 271
>gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo
sapiens]
Length = 614
Score = 82.4 bits (202), Expect = 1e-15
Identities = 62/206 (30%), Positives = 105/206 (50%), Gaps = 19/206 (9%)
Query: 47 EKRKEKNIKRGGNRFEPYANPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMD 106
+ R+E+ + G E + N ++ N+P DV Q L+DL + G++ V+++ D
Sbjct: 174 KSRREREAELGARALE-FTN------IYVKNLPVDVDEQGLQDLFSQ-FGKMLSVKVMRD 225
Query: 107 AEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPL-----KVKEDPDGEHARRAMQ-KA 160
G SR V F+ E +KA +N +SGR L + + + E RR Q K
Sbjct: 226 NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQ 285
Query: 161 GRL----GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSI 216
RL G ++V NLD + KL++ FS GV+ A ++ + G S+G G V F
Sbjct: 286 DRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPE 344
Query: 217 EAVQAISMFNGQLLFDRPMHVKMDER 242
EA +A++ NG+++ +P++V + +R
Sbjct: 345 EATKAVTEMNGRIVGTKPLYVALAQR 370
Score = 60.8 bits (146), Expect = 4e-09
Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 14/146 (9%)
Query: 96 GEVTYVELLMD-AEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKV---KEDPDGE 151
G + + + D A +S G A + F+ ++A + +N L G+P+++ + DP
Sbjct: 35 GPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEMLKGQPIRIMWSQRDP--- 91
Query: 152 HARRAMQKAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVT 211
++K+G +F+ NL+ + K L + FS G ++ + D+ G SRG G V
Sbjct: 92 ----GLRKSGV--GNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVH 144
Query: 212 FEQSIEAVQAISMFNGQLLFDRPMHV 237
FE A QAI+ NG LL DR + V
Sbjct: 145 FETHEAAQQAINTMNGMLLNDRKVFV 170
Score = 57.4 bits (137), Expect = 4e-08
Identities = 44/168 (26%), Positives = 81/168 (48%), Gaps = 12/168 (7%)
Query: 74 FITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLN 133
FI N+ + ++L D G + ++ D G SRG V F+ E+ ++A +N
Sbjct: 102 FIKNLEDSIDNKALYDTFST-FGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMN 159
Query: 134 KHSLSGRPL-----KVKEDPDGEHARRAMQKAGRLGSTVFVANLDYKVGWKKLKEVFSMA 188
L+ R + K + + + E RA++ + ++V NL V + L+++FS
Sbjct: 160 GMLLNDRKVFVGHFKSRREREAELGARALEF-----TNIYVKNLPVDVDEQGLQDLFSQF 214
Query: 189 GVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMH 236
G ++ ++ D G SR G V FE+ EA +A+ NG+ + R ++
Sbjct: 215 GKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLY 262
Score = 50.4 bits (119), Expect = 5e-06
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 607 PGVARKAC-QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEV 665
PG+ + IF++NL K L D F+ G++L + + S+G G V FE+ E
Sbjct: 91 PGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEA 150
Query: 666 AERACRMMNGMKLSGREIDV 685
A++A MNGM L+ R++ V
Sbjct: 151 AQQAINTMNGMLLNDRKVFV 170
Score = 48.5 bits (114), Expect = 2e-05
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 616 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN-GKSKGCGVVKFESPEVAERACRMMN 674
I+V+NLP D + L+D F++ G +L + +N G S+ G V FE E A++A MN
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMN 252
Query: 675 GMKLSGR 681
G ++SGR
Sbjct: 253 GKEVSGR 259
Score = 42.4 bits (98), Expect = 0.001
Identities = 23/60 (38%), Positives = 32/60 (53%)
Query: 616 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 675
++V+NL L+ +F+ G + A + E G SKG G V F SPE A +A MNG
Sbjct: 296 LYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
>gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Homo
sapiens]
Length = 631
Score = 82.0 bits (201), Expect = 2e-15
Identities = 60/206 (29%), Positives = 107/206 (51%), Gaps = 19/206 (9%)
Query: 47 EKRKEKNIKRGGNRFEPYANPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMD 106
+ RKE+ + G E + N +I N +V +SLK+L + G+ V+++ D
Sbjct: 174 KSRKEREAELGAKAKE-FTN------VYIKNFGEEVDDESLKELFSQ-FGKTLSVKVMRD 225
Query: 107 AEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKV-----KEDPDGEHARRAMQ-KA 160
GKS+G V ++ E KA E +N +SG+ + V K + E R+ Q K
Sbjct: 226 PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ 285
Query: 161 GRL----GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSI 216
R+ G +++ NLD + +KL++ FS G + A ++ + DG+S+G G V F
Sbjct: 286 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPE 344
Query: 217 EAVQAISMFNGQLLFDRPMHVKMDER 242
EA +A++ NG+++ +P++V + +R
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQR 370
Score = 65.5 bits (158), Expect = 2e-10
Identities = 46/179 (25%), Positives = 87/179 (48%), Gaps = 2/179 (1%)
Query: 50 KEKNIKRGGNRFEPYANPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEG 109
K K I+ ++ +P + FI N+ + ++L D G + +++ D G
Sbjct: 78 KGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDENG 136
Query: 110 KSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHARRAMQKAGRLGSTVFV 169
S+G A V F+ +E+ KA E +N L+ R + V + + + + V++
Sbjct: 137 -SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYI 195
Query: 170 ANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQ 228
N +V + LKE+FS G + ++ D +GKS+G G V++E+ +A +A+ NG+
Sbjct: 196 KNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGK 254
Score = 57.8 bits (138), Expect = 3e-08
Identities = 40/131 (30%), Positives = 68/131 (51%), Gaps = 13/131 (9%)
Query: 110 KSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKV---KEDPDGEHARRAMQKAGRLGST 166
+S G A V F+ ++A + +N + G+P+++ + DP +++K+G
Sbjct: 50 RSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDP-------SLRKSGV--GN 100
Query: 167 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN 226
VF+ NLD + K L + FS G ++ ++ D++G S+G V FE A +AI N
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 227 GQLLFDRPMHV 237
G LL DR + V
Sbjct: 160 GMLLNDRKVFV 170
Score = 49.3 bits (116), Expect = 1e-05
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 616 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 675
+F++NL K L D F+ G++L + + SKG V FE+ E A++A MNG
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 676 MKLSGREIDV 685
M L+ R++ V
Sbjct: 161 MLLNDRKVFV 170
Score = 48.9 bits (115), Expect = 2e-05
Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 7/112 (6%)
Query: 581 DRAIEMERG---NFGGSFAGSFGGAGGHAPGVARKACQ---IFVRNLPFDFTWKMLKDKF 634
D+AIE G N F G F + KA + ++++N + + LK+ F
Sbjct: 152 DKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELF 211
Query: 635 NECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDV 685
++ G L + + NGKSKG G V +E E A +A MNG ++SG+ I V
Sbjct: 212 SQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
Score = 46.6 bits (109), Expect = 8e-05
Identities = 23/72 (31%), Positives = 41/72 (56%)
Query: 616 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 675
++++NL + L+ +F+ G + A + +E+G+SKG G V F SPE A +A MNG
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 676 MKLSGREIDVRI 687
+ + + V +
Sbjct: 356 RIVGSKPLYVAL 367
>gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo
sapiens]
Length = 644
Score = 82.0 bits (201), Expect = 2e-15
Identities = 60/206 (29%), Positives = 107/206 (51%), Gaps = 19/206 (9%)
Query: 47 EKRKEKNIKRGGNRFEPYANPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMD 106
+ RKE+ + G E + N +I N +V +SLK+L + G+ V+++ D
Sbjct: 174 KSRKEREAELGAKAKE-FTN------VYIKNFGEEVDDESLKELFSQ-FGKTLSVKVMRD 225
Query: 107 AEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKV-----KEDPDGEHARRAMQ-KA 160
GKS+G V ++ E KA E +N +SG+ + V K + E R+ Q K
Sbjct: 226 PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ 285
Query: 161 GRL----GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSI 216
R+ G +++ NLD + +KL++ FS G + A ++ + DG+S+G G V F
Sbjct: 286 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPE 344
Query: 217 EAVQAISMFNGQLLFDRPMHVKMDER 242
EA +A++ NG+++ +P++V + +R
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQR 370
Score = 65.5 bits (158), Expect = 2e-10
Identities = 46/179 (25%), Positives = 87/179 (48%), Gaps = 2/179 (1%)
Query: 50 KEKNIKRGGNRFEPYANPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEG 109
K K I+ ++ +P + FI N+ + ++L D G + +++ D G
Sbjct: 78 KGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDENG 136
Query: 110 KSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHARRAMQKAGRLGSTVFV 169
S+G A V F+ +E+ KA E +N L+ R + V + + + + V++
Sbjct: 137 -SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYI 195
Query: 170 ANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQ 228
N +V + LKE+FS G + ++ D +GKS+G G V++E+ +A +A+ NG+
Sbjct: 196 KNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGK 254
Score = 57.8 bits (138), Expect = 3e-08
Identities = 40/131 (30%), Positives = 68/131 (51%), Gaps = 13/131 (9%)
Query: 110 KSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKV---KEDPDGEHARRAMQKAGRLGST 166
+S G A V F+ ++A + +N + G+P+++ + DP +++K+G
Sbjct: 50 RSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDP-------SLRKSGV--GN 100
Query: 167 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN 226
VF+ NLD + K L + FS G ++ ++ D++G S+G V FE A +AI N
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 227 GQLLFDRPMHV 237
G LL DR + V
Sbjct: 160 GMLLNDRKVFV 170
Score = 49.3 bits (116), Expect = 1e-05
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 616 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 675
+F++NL K L D F+ G++L + + SKG V FE+ E A++A MNG
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 676 MKLSGREIDV 685
M L+ R++ V
Sbjct: 161 MLLNDRKVFV 170
Score = 48.9 bits (115), Expect = 2e-05
Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 7/112 (6%)
Query: 581 DRAIEMERG---NFGGSFAGSFGGAGGHAPGVARKACQ---IFVRNLPFDFTWKMLKDKF 634
D+AIE G N F G F + KA + ++++N + + LK+ F
Sbjct: 152 DKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELF 211
Query: 635 NECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDV 685
++ G L + + NGKSKG G V +E E A +A MNG ++SG+ I V
Sbjct: 212 SQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
Score = 46.6 bits (109), Expect = 8e-05
Identities = 23/72 (31%), Positives = 41/72 (56%)
Query: 616 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 675
++++NL + L+ +F+ G + A + +E+G+SKG G V F SPE A +A MNG
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 676 MKLSGREIDVRI 687
+ + + V +
Sbjct: 356 RIVGSKPLYVAL 367
>gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Homo
sapiens]
Length = 660
Score = 82.0 bits (201), Expect = 2e-15
Identities = 60/206 (29%), Positives = 107/206 (51%), Gaps = 19/206 (9%)
Query: 47 EKRKEKNIKRGGNRFEPYANPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMD 106
+ RKE+ + G E + N +I N +V +SLK+L + G+ V+++ D
Sbjct: 174 KSRKEREAELGAKAKE-FTN------VYIKNFGEEVDDESLKELFSQ-FGKTLSVKVMRD 225
Query: 107 AEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKV-----KEDPDGEHARRAMQ-KA 160
GKS+G V ++ E KA E +N +SG+ + V K + E R+ Q K
Sbjct: 226 PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ 285
Query: 161 GRL----GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSI 216
R+ G +++ NLD + +KL++ FS G + A ++ + DG+S+G G V F
Sbjct: 286 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPE 344
Query: 217 EAVQAISMFNGQLLFDRPMHVKMDER 242
EA +A++ NG+++ +P++V + +R
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQR 370
Score = 65.5 bits (158), Expect = 2e-10
Identities = 46/179 (25%), Positives = 87/179 (48%), Gaps = 2/179 (1%)
Query: 50 KEKNIKRGGNRFEPYANPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEG 109
K K I+ ++ +P + FI N+ + ++L D G + +++ D G
Sbjct: 78 KGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDENG 136
Query: 110 KSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHARRAMQKAGRLGSTVFV 169
S+G A V F+ +E+ KA E +N L+ R + V + + + + V++
Sbjct: 137 -SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYI 195
Query: 170 ANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQ 228
N +V + LKE+FS G + ++ D +GKS+G G V++E+ +A +A+ NG+
Sbjct: 196 KNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGK 254
Score = 57.8 bits (138), Expect = 3e-08
Identities = 40/131 (30%), Positives = 68/131 (51%), Gaps = 13/131 (9%)
Query: 110 KSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKV---KEDPDGEHARRAMQKAGRLGST 166
+S G A V F+ ++A + +N + G+P+++ + DP +++K+G
Sbjct: 50 RSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDP-------SLRKSGV--GN 100
Query: 167 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN 226
VF+ NLD + K L + FS G ++ ++ D++G S+G V FE A +AI N
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 227 GQLLFDRPMHV 237
G LL DR + V
Sbjct: 160 GMLLNDRKVFV 170
Score = 49.3 bits (116), Expect = 1e-05
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 616 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 675
+F++NL K L D F+ G++L + + SKG V FE+ E A++A MNG
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 676 MKLSGREIDV 685
M L+ R++ V
Sbjct: 161 MLLNDRKVFV 170
Score = 48.9 bits (115), Expect = 2e-05
Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 7/112 (6%)
Query: 581 DRAIEMERG---NFGGSFAGSFGGAGGHAPGVARKACQ---IFVRNLPFDFTWKMLKDKF 634
D+AIE G N F G F + KA + ++++N + + LK+ F
Sbjct: 152 DKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELF 211
Query: 635 NECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDV 685
++ G L + + NGKSKG G V +E E A +A MNG ++SG+ I V
Sbjct: 212 SQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
Score = 46.6 bits (109), Expect = 8e-05
Identities = 23/72 (31%), Positives = 41/72 (56%)
Query: 616 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 675
++++NL + L+ +F+ G + A + +E+G+SKG G V F SPE A +A MNG
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 676 MKLSGREIDVRI 687
+ + + V +
Sbjct: 356 RIVGSKPLYVAL 367
>gi|168229150 poly(A) binding protein, cytoplasmic 4-like [Homo
sapiens]
Length = 370
Score = 80.9 bits (198), Expect = 4e-15
Identities = 53/208 (25%), Positives = 105/208 (50%), Gaps = 21/208 (10%)
Query: 45 QNEKRKEKNIKRGGNRFEPYANPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELL 104
+N K +E ++ + F +I N D+ + LKD V K G+ V+++
Sbjct: 173 KNRKDREAELRSKASEFT---------NVYIKNFGGDMDDERLKD-VFSKYGKTLSVKVM 222
Query: 105 MDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPL-------KVKEDPDGEHARRAM 157
D+ GKS+G V F E+ KKA E +N ++G+ + KV+ + + +
Sbjct: 223 TDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQL 282
Query: 158 QKA---GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQ 214
++ G G +++ NLD + +KL+ FS G + R ++++ +G+S+G G + F
Sbjct: 283 KRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQE-EGQSKGFGLICFSS 341
Query: 215 SIEAVQAISMFNGQLLFDRPMHVKMDER 242
+A +A++ NG++L +P+ + + +R
Sbjct: 342 PEDATKAMTEMNGRILGSKPLSIALAQR 369
Score = 59.7 bits (143), Expect = 9e-09
Identities = 47/199 (23%), Positives = 94/199 (47%), Gaps = 7/199 (3%)
Query: 50 KEKNIKRGGNRFEPYANPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEG 109
K K+I+ ++ + Y + FI N+ + ++L + G++ +++ D +G
Sbjct: 77 KGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSA-FGKILSSKVMSDDQG 135
Query: 110 KSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHARRAMQKAGRLGSTVFV 169
S+G A V F+ + + +A E +N L G + V + + ++ + V++
Sbjct: 136 -SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYI 194
Query: 170 ANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISM----- 224
N + ++LK+VFS G + ++ D GKS+G G V+F+ A +A+
Sbjct: 195 KNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRD 254
Query: 225 FNGQLLFDRPMHVKMDERA 243
NGQL+F K++ +A
Sbjct: 255 INGQLIFVGRAQKKVERQA 273
Score = 51.2 bits (121), Expect = 3e-06
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 7/112 (6%)
Query: 581 DRAIEMERGNFGGS---FAGSFGGAGGHAPGVARKACQ---IFVRNLPFDFTWKMLKDKF 634
DRAIE G F G F + KA + ++++N D + LKD F
Sbjct: 151 DRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVF 210
Query: 635 NECGHVLYADIKMEN-GKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDV 685
++ G L + ++ GKSKG G V F+S E A++A MNG ++G+ I V
Sbjct: 211 SKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFV 262
Score = 47.0 bits (110), Expect = 6e-05
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 612 KACQ---IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAER 668
+ CQ ++++NL + L+++F+ G + + E G+SKG G++ F SPE A +
Sbjct: 288 RGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQSKGFGLICFSSPEDATK 347
Query: 669 ACRMMNGMKLSGREIDVRI 687
A MNG L + + + +
Sbjct: 348 AMTEMNGRILGSKPLSIAL 366
Score = 42.4 bits (98), Expect = 0.001
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 616 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 675
+F++NL K L + F+ G +L + + ++ SKG V F++ A+RA MNG
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGSKGYAFVHFQNQSAADRAIEEMNG 159
Query: 676 MKLSGREIDV-----RIDRNA 691
L G ++ V R DR A
Sbjct: 160 KLLKGCKVFVGRFKNRKDREA 180
>gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
Length = 636
Score = 80.5 bits (197), Expect = 5e-15
Identities = 60/206 (29%), Positives = 106/206 (51%), Gaps = 19/206 (9%)
Query: 47 EKRKEKNIKRGGNRFEPYANPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMD 106
+ RKE+ + G R + + N +I N D+ + LKDL K G V+++ D
Sbjct: 174 KSRKEREAELGA-RAKEFTN------VYIKNFGEDMDDERLKDLFG-KFGPALSVKVMTD 225
Query: 107 AEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKV-----KEDPDGEHARRAMQ-KA 160
GKS+G V F+ E +KA + +N L+G+ + V K + E R+ Q K
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ 285
Query: 161 GRL----GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSI 216
R+ G ++V NLD + ++L++ FS G + A ++ + G+S+G G V F
Sbjct: 286 DRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPE 344
Query: 217 EAVQAISMFNGQLLFDRPMHVKMDER 242
EA +A++ NG+++ +P++V + +R
Sbjct: 345 EATKAVTEMNGRIVATKPLYVALAQR 370
Score = 62.4 bits (150), Expect = 1e-09
Identities = 40/164 (24%), Positives = 82/164 (50%), Gaps = 2/164 (1%)
Query: 74 FITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLN 133
FI N+ + ++L D G + +++ D G S+G V F+ +E+ ++A E +N
Sbjct: 102 FIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 134 KHSLSGRPLKVKEDPDGEHARRAMQKAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVR 193
L+ R + V + + + + V++ N + ++LK++F G +
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS 219
Query: 194 ADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 237
++ D+ GKS+G G V+FE+ +A +A+ NG+ L + ++V
Sbjct: 220 VKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 59.7 bits (143), Expect = 9e-09
Identities = 40/131 (30%), Positives = 69/131 (52%), Gaps = 13/131 (9%)
Query: 110 KSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKV---KEDPDGEHARRAMQKAGRLGST 166
+S G A V F+ ++A + +N + G+P+++ + DP +++K+G
Sbjct: 50 RSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDP-------SLRKSGV--GN 100
Query: 167 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN 226
+F+ NLD + K L + FS G ++ ++ D++G S+G G V FE A +AI N
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 227 GQLLFDRPMHV 237
G LL DR + V
Sbjct: 160 GMLLNDRKVFV 170
Score = 54.3 bits (129), Expect = 4e-07
Identities = 29/70 (41%), Positives = 40/70 (57%)
Query: 616 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 675
IF++NL K L D F+ G++L + + SKG G V FE+ E AERA MNG
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 676 MKLSGREIDV 685
M L+ R++ V
Sbjct: 161 MLLNDRKVFV 170
Score = 51.6 bits (122), Expect = 2e-06
Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 610 ARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKM-ENGKSKGCGVVKFESPEVAER 668
A++ ++++N D + LKD F + G L + E+GKSKG G V FE E A++
Sbjct: 187 AKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 669 ACRMMNGMKLSGREIDV 685
A MNG +L+G++I V
Sbjct: 247 AVDEMNGKELNGKQIYV 263
Score = 47.0 bits (110), Expect = 6e-05
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 616 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 675
++V+NL + L+ +F+ G + A + ME G+SKG G V F SPE A +A MNG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 676 MKLSGREIDVRI 687
++ + + V +
Sbjct: 356 RIVATKPLYVAL 367
>gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 78.6 bits (192), Expect = 2e-14
Identities = 62/224 (27%), Positives = 111/224 (49%), Gaps = 19/224 (8%)
Query: 45 QNEKRKEKNIKRGGNRFEPYANPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELL 104
Q + RKE+ + G R + + N +I N D+ + LKDL K G V+++
Sbjct: 172 QFKSRKEREAELGA-RAKEFPN------VYIKNFGEDMDDERLKDLFG-KFGPALSVKVM 223
Query: 105 MDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKV-----KEDPDGEHARRAMQ- 158
D GKS+G V F+ E +KA + +N L+G+ + V K + E R Q
Sbjct: 224 TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQM 283
Query: 159 KAGRLGS----TVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQ 214
K R+ ++V NLD + ++L++ FS G + A ++ + G+S+G G V F
Sbjct: 284 KQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSS 342
Query: 215 SIEAVQAISMFNGQLLFDRPMHVKMDERALPKGDFFPPERPQQL 258
EA +A++ NG+++ +P++V + +R + + E Q++
Sbjct: 343 PEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRM 386
Score = 64.3 bits (155), Expect = 4e-10
Identities = 40/164 (24%), Positives = 82/164 (50%), Gaps = 2/164 (1%)
Query: 74 FITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLN 133
F+ N+ + ++L D V G + ++ D G S+G V F+ E+ ++A + +N
Sbjct: 102 FVKNLDKSINNKALYDTVSA-FGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMN 159
Query: 134 KHSLSGRPLKVKEDPDGEHARRAMQKAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVR 193
L+GR + V + + + + V++ N + ++LK++F G +
Sbjct: 160 GMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALS 219
Query: 194 ADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 237
++ D+ GKS+G G V+FE+ +A +A+ NG+ L + ++V
Sbjct: 220 VKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 56.2 bits (134), Expect = 1e-07
Identities = 30/70 (42%), Positives = 42/70 (60%)
Query: 616 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 675
IFV+NL K L D + G++L ++ + SKG G V FE+ E AERA + MNG
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNG 160
Query: 676 MKLSGREIDV 685
M L+GR++ V
Sbjct: 161 MLLNGRKVFV 170
Score = 51.6 bits (122), Expect = 2e-06
Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 13/130 (10%)
Query: 111 SRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKV---KEDPDGEHARRAMQKAGRLGSTV 167
S A V F+ + + A + +N + G+P+++ + DP +++K+G +
Sbjct: 51 SSNYAYVNFQHTKDAEHALDTMNFDVIKGKPVRIMWSQRDP-------SLRKSGV--GNI 101
Query: 168 FVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNG 227
FV NLD + K L + S G ++ +++ D++G S+G G V FE A +AI NG
Sbjct: 102 FVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNG 160
Query: 228 QLLFDRPMHV 237
LL R + V
Sbjct: 161 MLLNGRKVFV 170
Score = 50.8 bits (120), Expect = 4e-06
Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 610 ARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKM-ENGKSKGCGVVKFESPEVAER 668
A++ ++++N D + LKD F + G L + E+GKSKG G V FE E A++
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 669 ACRMMNGMKLSGREIDV 685
A MNG +L+G++I V
Sbjct: 247 AVDEMNGKELNGKQIYV 263
Score = 46.2 bits (108), Expect = 1e-04
Identities = 25/72 (34%), Positives = 40/72 (55%)
Query: 616 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 675
++V+NL + L+ F+ G + A + ME G+SKG G V F SPE A +A MNG
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 676 MKLSGREIDVRI 687
++ + + V +
Sbjct: 356 RIVATKPLYVAL 367
>gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo
sapiens]
Length = 305
Score = 76.6 bits (187), Expect = 7e-14
Identities = 89/289 (30%), Positives = 122/289 (42%), Gaps = 23/289 (7%)
Query: 93 EKVGEVTYVELLMDAEGKSRGCA--VVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDG 150
E G +T ++++ + K C V +EE+ AA + H++ G +++K
Sbjct: 28 EAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA--DAAMAASPHAVDGNTVELKRAVSR 85
Query: 151 EHARR--AMQKAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGI 207
E + R A K +L FV L V L E FS G V +A+I+ DK GK RG
Sbjct: 86 EDSARPGAHAKVKKL----FVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGF 141
Query: 208 GTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERALPKGDFFPPERPQQLPHGLGGIGM 267
G V F Q+ +A ++ + + VK +A+PK D + GG G
Sbjct: 142 GFVYF-QNHDAADKAAVVKFHPIQGHRVEVK---KAVPKEDIYSGGGGGGSRSSRGGRG- 196
Query: 268 GLGPGGQPIDANHLNKGIGMGNIGPAGMGMEGIGFGINKMGGMEGPFGGGMENMGRFGSG 327
G G GG D N L+KG G G G G G G G N GG GGG + G G
Sbjct: 197 GRGRGGGR-DQNGLSKGGGGGYNSYGGYGGGG-GGGYNAYGG-----GGGGSSYGGSDYG 249
Query: 328 MNMGRINEILSNALKRGEIIAKQGGGGGGGSVPGIERMGPGIDRLGGAG 376
G + G + + GGGGGG S G GP GG G
Sbjct: 250 NGFGGFGSYSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPYRGGYGGGG 298
Score = 34.7 bits (78), Expect = 0.30
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 607 PGVARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADI--KMENGKSKGCGVVKFESPE 664
PG K ++FV L D L + F++ G V A+I ++GK +G G V F++ +
Sbjct: 91 PGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHD 150
Query: 665 VAERACRMMNGMKLSGREIDVR 686
A++A ++ + G ++V+
Sbjct: 151 AADKAA-VVKFHPIQGHRVEVK 171
Score = 33.9 bits (76), Expect = 0.52
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
Query: 546 GANSLERMGPAMGPALGAGIERMGLAMGGGGGASFDRAIEMERGNFGGSFAGSFGGAGGH 605
G S G G G G ++ GL+ GGGGG + G +GG G + GG
Sbjct: 185 GGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYN-------SYGGYGGGGGGGYNAYGGG 237
Query: 606 APG 608
G
Sbjct: 238 GGG 240
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 70.5 bits (171), Expect = 5e-12
Identities = 70/240 (29%), Positives = 110/240 (45%), Gaps = 37/240 (15%)
Query: 81 DVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGR 140
++ + + ++ ++E + T++++ + GKS+G A +EF E K+A NK + GR
Sbjct: 492 NLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGR 551
Query: 141 PLKVK-EDPDGEHARRAMQKAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILED 199
++++ + P G R+ T+FV L + LKE F + VRA I+ D
Sbjct: 552 AIRLELQGPRGSPNARSQP-----SKTLFVKGLSEDTTEETLKESFDGS---VRARIVTD 603
Query: 200 KD-GKSRGIGTVTFEQSIEAVQA-ISMFNGQLLFDRPMHVKMDERALPKGDFFPPERPQQ 257
++ G S+G G V F +A A +M +G++ ++ V +D A PKG+
Sbjct: 604 RETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNK---VTLD-WAKPKGE--------- 650
Query: 258 LPHGLGGIGMGLGPGGQPIDANHLNKGIGMGNIGPAGMGMEGIGFGINKMGGMEGPFGGG 317
G GG G G G G G G G G G G G G G GG G GGG
Sbjct: 651 --GGFGGRGGGRGGFG----------GRGGGRGGRGGFGGRGRG-GFGGRGGFRGGRGGG 697
Score = 56.2 bits (134), Expect = 1e-07
Identities = 43/169 (25%), Positives = 82/169 (48%), Gaps = 16/169 (9%)
Query: 77 NIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHS 136
N+P+ V LK+ V E E+ L+ +GKS+G A +EFK E +K E
Sbjct: 399 NLPYKVTQDELKE-VFEDAAEIR----LVSKDGKSKGIAYIEFKTEADAEKTFEEKQGTE 453
Query: 137 LSGRPLKVKEDPDGEHARRAMQKAGRLGS------TVFVANLDYKVGWKKLKEVFSMAGV 190
+ GR + + GE + + G+ + T+ ++NL Y + L+EVF A
Sbjct: 454 IDGRSISLYY--TGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATF 511
Query: 191 VVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 239
+ + ++++GKS+G + F +A +A++ N + + R + +++
Sbjct: 512 I---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 557
Score = 55.5 bits (132), Expect = 2e-07
Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 16/185 (8%)
Query: 36 PKGEGERPAQNEKRKEKNIKRGGNRFEPYANPTKRYRAFITNIPFDVKWQSLKDLVKEKV 95
P E + E K+K + PT + F+ N+ F+ LK + +
Sbjct: 272 PVKEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVF 331
Query: 96 G--EVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHA 153
++ V++ + G +R V+F+ E ++KA E L + G +K+ E P G+ +
Sbjct: 332 AKNDLAVVDVRI---GMTRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL-EKPKGKDS 386
Query: 154 RRAMQKAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFE 213
++ R T+ NL YKV +LKEVF A + L KDGKS+GI + F+
Sbjct: 387 KKE-----RDARTLLAKNLPYKVTQDELKEVFEDAAEI----RLVSKDGKSKGIAYIEFK 437
Query: 214 QSIEA 218
+A
Sbjct: 438 TEADA 442
Score = 40.0 bits (92), Expect = 0.007
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 611 RKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERAC 670
R A + +NLP+ T LK+ F + + ++GKSKG ++F++ AE+
Sbjct: 390 RDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVS---KDGKSKGIAYIEFKTEADAEKTF 446
Query: 671 RMMNGMKLSGREIDV 685
G ++ GR I +
Sbjct: 447 EEKQGTEIDGRSISL 461
Score = 33.9 bits (76), Expect = 0.52
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 616 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 675
+ + NL + T + L++ F + + + +NGKSKG ++F S E A+ A N
Sbjct: 488 LVLSNLSYSATEETLQEVFEKATFIKVP--QNQNGKSKGYAFIEFASFEDAKEALNSCNK 545
Query: 676 MKLSGREIDVRI 687
++ GR I + +
Sbjct: 546 REIEGRAIRLEL 557
Score = 33.9 bits (76), Expect = 0.52
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 616 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 675
+FV+ L D T + LK+ F+ + E G SKG G V F S E A+ A M
Sbjct: 574 LFVKGLSEDTTEETLKESFDGSVRARIVTDR-ETGSSKGFGFVDFNSEEDAKAAKEAMED 632
Query: 676 MKLSGREI 683
++ G ++
Sbjct: 633 GEIDGNKV 640
Score = 30.8 bits (68), Expect = 4.4
Identities = 19/45 (42%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 564 GIERMGLAMGGGGGASFDRAIEMERGNFGGSFAGSFGGAGGHAPG 608
G G GG GG R RG FGG G FGG GG G
Sbjct: 652 GFGGRGGGRGGFGGRGGGRG---GRGGFGGRGRGGFGGRGGFRGG 693
>gi|7661952 squamous cell carcinoma antigen recognized by T cells 3
[Homo sapiens]
Length = 963
Score = 66.6 bits (161), Expect = 7e-11
Identities = 61/251 (24%), Positives = 114/251 (45%), Gaps = 19/251 (7%)
Query: 33 APGPKGE----GERPAQNEKRKEKNIKRGGNRFEPYANPTKRYRAFITNIPFDVKWQSLK 88
A GP G+ P +K K ++KR + + + F++N+P+ ++ K
Sbjct: 663 AAGPAGKCAAVDVEPPSKQKEKAASLKRDMPKVL-HDSSKDSITVFVSNLPYSMQEPDTK 721
Query: 89 -DLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKED 147
+ E GEV + + G RG VEFK E+S +A E +++ S+ GRP+ V
Sbjct: 722 LRPLFEACGEVVQIRPIFSNRGDFRGYCYVEFKEEKSALQALE-MDRKSVEGRPMFV--S 778
Query: 148 PDGEHARRAMQKAGRLGST-----VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDG 202
P + ++ K R ++ +F++ L + ++L+E+ G V ++ ++ G
Sbjct: 779 PCVDKSKNPDFKVFRYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAG 838
Query: 203 KSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD---ERALPKGDFF--PPERPQQ 257
K +G+ V +E +A QA+ +G + + + V + +R +P+ P P
Sbjct: 839 KPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNPPQRKVPEKPETRKAPGGPML 898
Query: 258 LPHGLGGIGMG 268
LP G G G
Sbjct: 899 LPQTYGARGKG 909
>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
Length = 424
Score = 65.5 bits (158), Expect = 2e-10
Identities = 51/171 (29%), Positives = 79/171 (46%), Gaps = 22/171 (12%)
Query: 93 EKVGEVTYVELLMDA-------------EGKSRGCAVVEFKMEESMKKAAEVLNKHSLSG 139
EKV E EL + A G+ +G VEF EE A +++N L G
Sbjct: 22 EKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYG 81
Query: 140 RPLKVKEDPDGEHARRAMQKAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRA-DILE 198
+P++V + A K +G+ +F+ NLD ++ K L + FS GV+++ I+
Sbjct: 82 KPIRVNK-------ASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMR 134
Query: 199 DKD-GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERALPKGD 248
D D G S+G + F + AI NGQ L +RP+ V + KG+
Sbjct: 135 DPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE 185
Score = 41.6 bits (96), Expect = 0.002
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 165 STVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAIS 223
+TV+V LD KV L E+F AG VV + +D+ G+ +G G V F +A AI
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 224 MFNGQLLFDRPMHV 237
+ N L+ +P+ V
Sbjct: 73 IMNMIKLYGKPIRV 86
Score = 38.5 bits (88), Expect = 0.021
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 616 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKM---ENGKSKGCGVVKFESPEVAERACRM 672
IF+ NL + K+L D F+ G +L M + G SKG + F S + ++ A
Sbjct: 102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 161
Query: 673 MNGMKLSGREIDV 685
MNG L R I V
Sbjct: 162 MNGQYLCNRPITV 174
Score = 32.7 bits (73), Expect = 1.2
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 616 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN--GKSKGCGVVKFESPEVAERACRMM 673
++V L + +L + F + G V+ + + G+ +G G V+F S E A+ A ++M
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 674 NGMKLSGREIDV 685
N +KL G+ I V
Sbjct: 75 NMIKLYGKPIRV 86
>gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a
[Homo sapiens]
Length = 355
Score = 64.7 bits (156), Expect = 3e-10
Identities = 84/340 (24%), Positives = 139/340 (40%), Gaps = 35/340 (10%)
Query: 2 AAGVEAAAEVAATEIKMEEESGAPGVPSGNGAPGPKG-----EGERPAQNEKRKEKNIKR 56
+AG + A VAAT+ G G + G +G EG + ++ +++
Sbjct: 22 SAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGSAESEGAKIDASKNEEDEGHSN 81
Query: 57 GGNRFEPYANPTK-RYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMD-AEGKSRGC 114
R A + ++ FI + +D + LKD K GEV L +D G+SRG
Sbjct: 82 SSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYF-SKFGEVVDCTLKLDPITGRSRGF 140
Query: 115 AVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHARRAMQKAGRLGSTVFVANLDY 174
V FK ES+ K + +H L+G+ + DP A + + + +FV L
Sbjct: 141 GFVLFKESESVDKVMD-QKEHKLNGKVI----DPKRAKAMKTKEPVKK----IFVGGLSP 191
Query: 175 KVGWKKLKEVFSMAGVVVRADI-LEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDR 233
+K++E F G V ++ +++K K RG +TF++ E V+ I +
Sbjct: 192 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEE-EPVKKIMEKKYHNVGLS 250
Query: 234 PMHVKMDERALPKGDFFPPERPQQLPHGLGGIGMGLGPGGQPID------ANHLNKGIGM 287
+K+ A+ K + ++ QQ G G G GG P +N+ N+G G
Sbjct: 251 KCEIKV---AMSKEQY---QQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQGYGN 304
Query: 288 GNIGPAGMGMEGIGFGINKMGGMEGPFGGGMENMGRFGSG 327
G G G+G G +G G + + G G
Sbjct: 305 YGYNSQGYG----GYGGYDYTGYNNYYGYGDYSNQQSGYG 340
>gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b
[Homo sapiens]
Length = 336
Score = 62.0 bits (149), Expect = 2e-09
Identities = 84/334 (25%), Positives = 135/334 (40%), Gaps = 42/334 (12%)
Query: 2 AAGVEAAAEVAATEIKMEEESGAPGVPSGNGAPGPKGEGERPAQNEKRKEKNIKRGGNRF 61
+AG + A VAAT+ G G + G +G A++E G +
Sbjct: 22 SAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS---AESE----------GAKI 68
Query: 62 EPYANPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMD-AEGKSRGCAVVEFK 120
+ N + FI + +D + LKD K GEV L +D G+SRG V FK
Sbjct: 69 DASKNEEDEGKMFIGGLSWDTTKKDLKDYF-SKFGEVVDCTLKLDPITGRSRGFGFVLFK 127
Query: 121 MEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHARRAMQKAGRLGSTVFVANLDYKVGWKK 180
ES+ K + +H L+G+ + DP A + + + +FV L +K
Sbjct: 128 ESESVDKVMD-QKEHKLNGKVI----DPKRAKAMKTKEPVKK----IFVGGLSPDTPEEK 178
Query: 181 LKEVFSMAGVVVRADI-LEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 239
++E F G V ++ +++K K RG +TF++ E V+ I + +K+
Sbjct: 179 IREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEE-EPVKKIMEKKYHNVGLSKCEIKV 237
Query: 240 DERALPKGDFFPPERPQQLPHGLGGIGMGLGPGGQPID------ANHLNKGIGMGNIGPA 293
A+ K + ++ QQ G G G GG P +N+ N+G G
Sbjct: 238 ---AMSKEQY---QQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQGYGNYGYNSQ 291
Query: 294 GMGMEGIGFGINKMGGMEGPFGGGMENMGRFGSG 327
G G G+G G +G G + + G G
Sbjct: 292 GYG----GYGGYDYTGYNNYYGYGDYSNQQSGYG 321
>gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isoform
B1 [Homo sapiens]
Length = 353
Score = 60.5 bits (145), Expect = 5e-09
Identities = 88/331 (26%), Positives = 128/331 (38%), Gaps = 71/331 (21%)
Query: 72 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMD-AEGKSRGCAVVEFKMEESMKKAAE 130
+ FI + F+ +SL++ E+ G++T ++ D A +SRG V F + AA
Sbjct: 22 KLFIGGLSFETTEESLRNYY-EQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVD-AAM 79
Query: 131 VLNKHSLSGRPLKVKEDPDGEHARRAMQKAGRLGSTV-----FVANLDYKVGWKKLKEVF 185
HS+ GR ++ K A +++G+ G+ V FV + L++ F
Sbjct: 80 AARPHSIDGRVVEPKRAV-------AREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYF 132
Query: 186 SMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERAL 244
G + +I+ D+ GK RG G VTF+ + V I + + V+ +AL
Sbjct: 133 EEYGKIDTIEIITDRQSGKKRGFGFVTFDDH-DPVDKIVLQKYHTINGHNAEVR---KAL 188
Query: 245 PKGDFFPPERPQQLPHGLGG-IGMGLGPGGQPIDANHLNKGIGMGNIGPAGMGMEGIGFG 303
+ + + Q G GG G G GG GN GP G G
Sbjct: 189 SRQEM---QEVQSSRSGRGGNFGFGDSRGGG-------------GNFGP--------GPG 224
Query: 304 INKMGGMEGPFGGGMENMGRFGSGMNMGRINEILSNALKRGEIIAKQGGGGGGGSVPGIE 363
N GG +G +G G FG G N GGG GGG+ G
Sbjct: 225 SNFRGGSDG-YGSGRG----FGDGYN-------------------GYGGGPGGGNFGGSP 260
Query: 364 RMGPGIDRLGGA--GMERMGAGLGHGMDRVG 392
G G GG G G G G G D G
Sbjct: 261 GYGGGRGGYGGGGPGYGNQGGGYGGGYDNYG 291
>gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform A2
[Homo sapiens]
Length = 341
Score = 60.5 bits (145), Expect = 5e-09
Identities = 88/331 (26%), Positives = 128/331 (38%), Gaps = 71/331 (21%)
Query: 72 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMD-AEGKSRGCAVVEFKMEESMKKAAE 130
+ FI + F+ +SL++ E+ G++T ++ D A +SRG V F + AA
Sbjct: 10 KLFIGGLSFETTEESLRNYY-EQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVD-AAM 67
Query: 131 VLNKHSLSGRPLKVKEDPDGEHARRAMQKAGRLGSTV-----FVANLDYKVGWKKLKEVF 185
HS+ GR ++ K A +++G+ G+ V FV + L++ F
Sbjct: 68 AARPHSIDGRVVEPKRAV-------AREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYF 120
Query: 186 SMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERAL 244
G + +I+ D+ GK RG G VTF+ + V I + + V+ +AL
Sbjct: 121 EEYGKIDTIEIITDRQSGKKRGFGFVTFDDH-DPVDKIVLQKYHTINGHNAEVR---KAL 176
Query: 245 PKGDFFPPERPQQLPHGLGG-IGMGLGPGGQPIDANHLNKGIGMGNIGPAGMGMEGIGFG 303
+ + + Q G GG G G GG GN GP G G
Sbjct: 177 SRQEM---QEVQSSRSGRGGNFGFGDSRGGG-------------GNFGP--------GPG 212
Query: 304 INKMGGMEGPFGGGMENMGRFGSGMNMGRINEILSNALKRGEIIAKQGGGGGGGSVPGIE 363
N GG +G +G G FG G N GGG GGG+ G
Sbjct: 213 SNFRGGSDG-YGSGRG----FGDGYN-------------------GYGGGPGGGNFGGSP 248
Query: 364 RMGPGIDRLGGA--GMERMGAGLGHGMDRVG 392
G G GG G G G G G D G
Sbjct: 249 GYGGGRGGYGGGGPGYGNQGGGYGGGYDNYG 279
>gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c
[Homo sapiens]
Length = 306
Score = 60.1 bits (144), Expect = 7e-09
Identities = 57/221 (25%), Positives = 97/221 (43%), Gaps = 18/221 (8%)
Query: 2 AAGVEAAAEVAATEIKMEEESGAPGVPSGNGAPGPKG-----EGERPAQNEKRKEKNIKR 56
+AG + A VAAT+ G G + G +G EG + ++ +++
Sbjct: 22 SAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGSAESEGAKIDASKNEEDEGHSN 81
Query: 57 GGNRFEPYANPTK-RYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMD-AEGKSRGC 114
R A + ++ FI + +D + LKD K GEV L +D G+SRG
Sbjct: 82 SSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYF-SKFGEVVDCTLKLDPITGRSRGF 140
Query: 115 AVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHARRAMQKAGRLGSTVFVANLDY 174
V FK ES+ K + +H L+G+ + DP A + + + +FV L
Sbjct: 141 GFVLFKESESVDKVMD-QKEHKLNGKVI----DPKRAKAMKTKEPVKK----IFVGGLSP 191
Query: 175 KVGWKKLKEVFSMAGVVVRADI-LEDKDGKSRGIGTVTFEQ 214
+K++E F G V ++ +++K K RG +TF++
Sbjct: 192 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKE 232
Score = 35.0 bits (79), Expect = 0.23
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 10/109 (9%)
Query: 167 VFVANLDYKVGWKKLKEVFSMAGVVVRADI-LEDKDGKSRGIGTVTFEQSIEAVQAI--- 222
+F+ L + K LK+ FS G VV + L+ G+SRG G V F++S E+V +
Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES-ESVDKVMDQ 157
Query: 223 --SMFNGQLLFD---RPMHVKMDERALPKGDFFPPERPQQLPHGLGGIG 266
NG+++ + M K + + G P +++ GG G
Sbjct: 158 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFG 206
>gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens]
Length = 589
Score = 59.7 bits (143), Expect = 9e-09
Identities = 91/333 (27%), Positives = 124/333 (37%), Gaps = 52/333 (15%)
Query: 165 STVFVANLDYKVGWKKLKEVFSMAGVVVR--------ADILEDKD-GKSRGIGTVTFEQS 215
+T+FV L V ++ E F G++ ++ DKD GK +G TV+F+
Sbjct: 231 NTIFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTGKPKGEATVSFDDP 290
Query: 216 IEAVQAISMFNGQLLFDRPMHVKMDERALPKGDFFPPERPQQLPHGLGGI---GMGLGPG 272
A AI F+G+ + V R + +F G GG G G G
Sbjct: 291 PSAKAAIDWFDGKEFHGNIIKVSFATR---RPEFMRGGGSGGGRRGRGGYRGRGGFQGRG 347
Query: 273 GQPIDANHLNKGIGMGNIG-------------------PAGMGMEGIGFGINK------- 306
G P + + GN+ P+G G G+G +
Sbjct: 348 GDPKSGDWVCPNPSCGNMNFARRNSCNQCNEPRPEDSRPSGGDFRGRGYGGERGYRGRGG 407
Query: 307 MGGMEGPFGGGMENMGRFGSGMNMGRINEILSNALKRGEIIAKQGGGGGGGSVPGIERMG 366
GG G +GG G G + G + S G+ GG GG G G
Sbjct: 408 RGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDRGGGYGGDRGGG 467
Query: 367 PGIDRLGGAGMERMG----AGLGHGMDRVGSEIERMGLVMDRMG-SVERMGSGIER-MGP 420
G DR GG G +R G G G+G DR G +R G DR G +R G G +R G
Sbjct: 468 YGGDRGGGYGGDRGGYGGDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGG 527
Query: 421 LGLDHMASSIERMGQTMERIGS-GVERMGAGMG 452
G D S G +R G G +R G G G
Sbjct: 528 YGGDRGGGS----GYGGDRSGGYGGDRSGGGYG 556
Score = 43.1 bits (100), Expect = 9e-04
Identities = 51/153 (33%), Positives = 61/153 (39%), Gaps = 20/153 (13%)
Query: 261 GLGGIGMGLGPGGQPIDANHLNKGIGMGNIGPAGMGMEGIGFGINKMGGMEGPFGG-GME 319
G GG G G GG ++G G G G G + G+G ++ GG G GG G +
Sbjct: 442 GYGGDRSGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGGYGGD 501
Query: 320 NMGRFGSGMNMGRINEILSNALKRGEIIAKQGGGGGGGSVPGIERMGPGIDRLGGAGMER 379
G G G RG GG GGGS G G DR GG G +R
Sbjct: 502 RGGYGGDRGGYGGDRGGYGGDRSRG----GYGGDRGGGS-------GYGGDRSGGYGGDR 550
Query: 380 MGAGLGHGMDRVGSEIERMGLVMDRMGSVERMG 412
G G+G DR G G DR G +MG
Sbjct: 551 SGG--GYGGDRGG------GYGGDRGGYGGKMG 575
>gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]
Length = 592
Score = 59.7 bits (143), Expect = 9e-09
Identities = 91/333 (27%), Positives = 124/333 (37%), Gaps = 52/333 (15%)
Query: 165 STVFVANLDYKVGWKKLKEVFSMAGVVVR--------ADILEDKD-GKSRGIGTVTFEQS 215
+T+FV L V ++ E F G++ ++ DKD GK +G TV+F+
Sbjct: 234 NTIFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTGKPKGEATVSFDDP 293
Query: 216 IEAVQAISMFNGQLLFDRPMHVKMDERALPKGDFFPPERPQQLPHGLGGI---GMGLGPG 272
A AI F+G+ + V R + +F G GG G G G
Sbjct: 294 PSAKAAIDWFDGKEFHGNIIKVSFATR---RPEFMRGGGSGGGRRGRGGYRGRGGFQGRG 350
Query: 273 GQPIDANHLNKGIGMGNIG-------------------PAGMGMEGIGFGINK------- 306
G P + + GN+ P+G G G+G +
Sbjct: 351 GDPKSGDWVCPNPSCGNMNFARRNSCNQCNEPRPEDSRPSGGDFRGRGYGGERGYRGRGG 410
Query: 307 MGGMEGPFGGGMENMGRFGSGMNMGRINEILSNALKRGEIIAKQGGGGGGGSVPGIERMG 366
GG G +GG G G + G + S G+ GG GG G G
Sbjct: 411 RGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDRGGGYGGDRGGG 470
Query: 367 PGIDRLGGAGMERMG----AGLGHGMDRVGSEIERMGLVMDRMG-SVERMGSGIER-MGP 420
G DR GG G +R G G G+G DR G +R G DR G +R G G +R G
Sbjct: 471 YGGDRGGGYGGDRGGYGGDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGG 530
Query: 421 LGLDHMASSIERMGQTMERIGS-GVERMGAGMG 452
G D S G +R G G +R G G G
Sbjct: 531 YGGDRGGGS----GYGGDRSGGYGGDRSGGGYG 559
Score = 43.1 bits (100), Expect = 9e-04
Identities = 51/153 (33%), Positives = 61/153 (39%), Gaps = 20/153 (13%)
Query: 261 GLGGIGMGLGPGGQPIDANHLNKGIGMGNIGPAGMGMEGIGFGINKMGGMEGPFGG-GME 319
G GG G G GG ++G G G G G + G+G ++ GG G GG G +
Sbjct: 445 GYGGDRSGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGGYGGD 504
Query: 320 NMGRFGSGMNMGRINEILSNALKRGEIIAKQGGGGGGGSVPGIERMGPGIDRLGGAGMER 379
G G G RG GG GGGS G G DR GG G +R
Sbjct: 505 RGGYGGDRGGYGGDRGGYGGDRSRG----GYGGDRGGGS-------GYGGDRSGGYGGDR 553
Query: 380 MGAGLGHGMDRVGSEIERMGLVMDRMGSVERMG 412
G G+G DR G G DR G +MG
Sbjct: 554 SGG--GYGGDRGG------GYGGDRGGYGGKMG 578
>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
Length = 494
Score = 59.3 bits (142), Expect = 1e-08
Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 11/129 (8%)
Query: 33 APGPKGEGERPAQNEKRKEKNIKRGGNRFEPYANPTK-RYRAFITNIPFDVKWQSLKDLV 91
A GP+ +G + R +R G + Y PT+ YR + N+ WQ LKD +
Sbjct: 70 ARGPRRDG---SYGSGRSGYGYRRSGR--DKYGPPTRTEYRLIVENLSSRCSWQDLKDYM 124
Query: 92 KEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGE 151
++ GEVTY DA + V+EF MK+A E L+ ++GR +++ ED G
Sbjct: 125 RQ-AGEVTYA----DAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVEDKPGS 179
Query: 152 HARRAMQKA 160
RR+ ++
Sbjct: 180 RRRRSYSRS 188
Score = 42.4 bits (98), Expect = 0.001
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 9/103 (8%)
Query: 593 GSFAGSFGGAGGHAPG------VARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIK 646
GS+ G G G R ++ V NL +W+ LKD + G V YAD
Sbjct: 77 GSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYAD-- 134
Query: 647 MENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 689
G+ K GV++F S +RA ++G +++GR+I + D+
Sbjct: 135 AHKGR-KNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVEDK 176
>gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 59.3 bits (142), Expect = 1e-08
Identities = 79/302 (26%), Positives = 116/302 (38%), Gaps = 31/302 (10%)
Query: 67 PTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGK-SRGCAVVEFKMEESM 125
P + + FI + F+ +SL+ E+ G +T ++ D K SRG V + E +
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHF-EQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 126 KKAAEVLNKHSLSGRPLKVKEDPDGEHARRAMQKAGRLGSTVFVANLDYKVGWKKLKEVF 185
A H + GR ++ K E ++R A +FV + L++ F
Sbjct: 69 DAAMNT-TPHKVDGRVVEPKRAVSREDSQRP--GAHLTVKKIFVGGIKEDTEEHHLRDYF 125
Query: 186 SMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERAL 244
G + +I+ D+ GK RG VTF+ ++V I + + V+ +AL
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDH-DSVDKIVIQKYHTVKGHNCEVR---KAL 181
Query: 245 PKGDFFPPERPQQLPHGLGGIGMGLGPGGQPID-----ANHLNKGIGMGNIGPAGMGMEG 299
PK + Q+ G G G G G G D N +G G+ G G G G
Sbjct: 182 PKQEMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYG--G 239
Query: 300 IGFGINKMGGMEGPFGGGMENMGRFGSGMNMGRINEILSNALKRGEIIAKQGGGGGGGSV 359
G G N G FGGG GS + G N SN GG GG
Sbjct: 240 SGDGYNGFGNDGSNFGGG-------GSYNDFGNYNNQSSN-------FGPMKGGNFGGRS 285
Query: 360 PG 361
G
Sbjct: 286 SG 287
>gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 59.3 bits (142), Expect = 1e-08
Identities = 79/302 (26%), Positives = 116/302 (38%), Gaps = 31/302 (10%)
Query: 67 PTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGK-SRGCAVVEFKMEESM 125
P + + FI + F+ +SL+ E+ G +T ++ D K SRG V + E +
Sbjct: 10 PEQLRKLFIGGLSFETTDESLRSHF-EQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 126 KKAAEVLNKHSLSGRPLKVKEDPDGEHARRAMQKAGRLGSTVFVANLDYKVGWKKLKEVF 185
A H + GR ++ K E ++R A +FV + L++ F
Sbjct: 69 DAAMNT-TPHKVDGRVVEPKRAVSREDSQRP--GAHLTVKKIFVGGIKEDTEEHHLRDYF 125
Query: 186 SMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERAL 244
G + +I+ D+ GK RG VTF+ ++V I + + V+ +AL
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDH-DSVDKIVIQKYHTVKGHNCEVR---KAL 181
Query: 245 PKGDFFPPERPQQLPHGLGGIGMGLGPGGQPID-----ANHLNKGIGMGNIGPAGMGMEG 299
PK + Q+ G G G G G G D N +G G+ G G G G
Sbjct: 182 PKQEMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYG--G 239
Query: 300 IGFGINKMGGMEGPFGGGMENMGRFGSGMNMGRINEILSNALKRGEIIAKQGGGGGGGSV 359
G G N G FGGG GS + G N SN GG GG
Sbjct: 240 SGDGYNGFGNDGSNFGGG-------GSYNDFGNYNNQSSN-------FGPMKGGNFGGRS 285
Query: 360 PG 361
G
Sbjct: 286 SG 287
>gi|115511032 ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B) [Homo sapiens]
Length = 359
Score = 58.2 bits (139), Expect = 3e-08
Identities = 46/156 (29%), Positives = 81/156 (51%), Gaps = 11/156 (7%)
Query: 75 ITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDA-EGKSRGCAVVEFKMEESMKKAAEVLN 133
+ +P ++ + LK L +GE+ +L+ D G+S G V + + +KA LN
Sbjct: 43 VNYLPQNMTQEELKSLFGS-IGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLN 101
Query: 134 KHSLSGRPLKVKEDPDGEHARRAMQKAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVR 193
L + +KV +AR + A + ++V+ L + K+L+++FS G ++
Sbjct: 102 GLRLQTKTIKVS------YARPS--SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 153
Query: 194 ADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQ 228
+ IL D+ G SRG+G + F++ IEA +AI NGQ
Sbjct: 154 SRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 38.5 bits (88), Expect = 0.021
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 616 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN--GKSKGCGVVKFESPEVAERACRMM 673
++V LP T K L+ F++ G ++ + I ++ G S+G G ++F+ AE A + +
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 674 NGMKLSG 680
NG K G
Sbjct: 187 NGQKPPG 193
Score = 38.1 bits (87), Expect = 0.027
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 616 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN--GKSKGCGVVKFESPEVAERACRMM 673
+ V LP + T + LK F G + + + G+S G G V + P+ AE+A +
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 674 NGMKLSGREIDVRIDR 689
NG++L + I V R
Sbjct: 101 NGLRLQTKTIKVSYAR 116
Score = 37.0 bits (84), Expect = 0.061
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 164 GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILED-KDGKSRGIGTVTFEQSIEAVQAI 222
G +FV NL L ++F G V ++ D K +G G VT EA AI
Sbjct: 275 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 334
Query: 223 SMFNGQLLFDRPMHV 237
+ NG L DR + V
Sbjct: 335 ASLNGYRLGDRVLQV 349
Score = 29.6 bits (65), Expect = 9.8
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 165 STVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAIS 223
+ + V L + ++LK +F G + ++ DK G+S G G V + +A +AI+
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 224 MFNGQLLFDRPMHV 237
NG L + + V
Sbjct: 99 TLNGLRLQTKTIKV 112
>gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a
[Homo sapiens]
Length = 320
Score = 57.8 bits (138), Expect = 3e-08
Identities = 82/314 (26%), Positives = 121/314 (38%), Gaps = 38/314 (12%)
Query: 59 NRFEPYANPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGK-SRGCAVV 117
++ E P + + FI + F+ +SL+ E+ G +T ++ D K SRG V
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHF-EQWGTLTDCVVMRDPNTKRSRGFGFV 60
Query: 118 EFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHARRAMQKAGRLGSTVFVANLDYKVG 177
+ E + A H + GR ++ K E ++R A +FV +
Sbjct: 61 TYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRP--GAHLTVKKIFVGGIKEDTE 117
Query: 178 WKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQ--SIE--AVQAISMFNGQLLFD 232
L++ F G + +I+ D+ GK RG VTF+ S++ +Q NG
Sbjct: 118 EHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNG----- 172
Query: 233 RPMHVKMDERALPKGDFFPPERPQQLPHGLGGIGMGLGPGGQPIDANHLNKGIGMGNIGP 292
H +AL K + Q+ G G G G G G D N G G GN
Sbjct: 173 ---HNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFGGND----NFGRG-GNFSG 224
Query: 293 AGMGMEGIGFGINKMGGMEGPFGGGMENMGRFGSGM-------NMGRINEILSN--ALKR 343
G GFG ++ GG G G G G GS + G N SN +K
Sbjct: 225 RG------GFGGSRGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKG 278
Query: 344 GEIIAKQGGGGGGG 357
G + G GGG
Sbjct: 279 GNFGGRSSGPYGGG 292
>gi|20373175 musashi 2 isoform a [Homo sapiens]
Length = 328
Score = 57.8 bits (138), Expect = 3e-08
Identities = 85/324 (26%), Positives = 126/324 (38%), Gaps = 54/324 (16%)
Query: 82 VKWQSLKDLVKE---KVGEVTYVELLMDAEGK-SRGCAVVEFKMEESMKKAAEVLNK--H 135
+ WQ+ D +++ K GE+ ++ D K SRG V F S+ K VL + H
Sbjct: 28 LSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDK---VLGQPHH 84
Query: 136 SLSGRPLKVKEDPDGEHARRAMQKAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRAD 195
L + + DP RRA K +FV L + +K+ F G V A
Sbjct: 85 ELDSKTI----DPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAM 140
Query: 196 ILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERALPKGDFFPP-- 252
++ DK + RG G VTFE + V+ + + + ++ + K +A PK FPP
Sbjct: 141 LMFDKTTNRHRGFGFVTFENE-DVVEKVCEIHFHEINNKMVECK---KAQPKEVMFPPGT 196
Query: 253 -ERPQQLPHGLGGIGMGLGPGGQPIDANHLNKGIGMGNIGPAGMGMEGIGFGINKMGGME 311
R + LP+ + +G+G G P G G P+ G + GF
Sbjct: 197 RGRARGLPYTMDAFMLGMGMLGYPNFV--ATYGRGYPGFAPS-YGYQFPGF----PAAAY 249
Query: 312 GPFGGGMENMGRFGSGMNMGRINEILSNALKRGEIIAKQGGGGGGGSVPG--IERMGP-- 367
GP R GSG N R GG G + PG + GP
Sbjct: 250 GPVAAAAVAAAR-GSGSNPAR------------------PGGFPGANSPGPVADLYGPAS 290
Query: 368 ---GIDRLGGAGMERMGAGLGHGM 388
G+ A + G+G GHG+
Sbjct: 291 QDSGVGNYISAASPQPGSGFGHGI 314
Score = 29.6 bits (65), Expect = 9.8
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 607 PGVARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN--GKSKGCGVVKFESPE 664
P + + +IFV L + + +K F + G V A + + + +G G V FE+ +
Sbjct: 103 PKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENED 162
Query: 665 VAERACRM 672
V E+ C +
Sbjct: 163 VVEKVCEI 170
>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
sapiens]
Length = 378
Score = 57.8 bits (138), Expect = 3e-08
Identities = 89/365 (24%), Positives = 135/365 (36%), Gaps = 29/365 (7%)
Query: 42 RPAQNEKRKEKNIKRGGNRFEPYANPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYV 101
RP + R+ + +RG +P P + + FI + F+ SL++ EK G +T
Sbjct: 9 RPQPDSGRRRR--RRGEEGHDP-KEPEQLRKLFIGGLSFETTDDSLREHF-EKWGTLTDC 64
Query: 102 ELLMDAEGK-SRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHARRAMQKA 160
++ D + K SRG V + E + AA H + GR ++ K E + + A
Sbjct: 65 VVMRDPQTKRSRGFGFVTYSCVEEVD-AAMCARPHKVDGRVVEPKRAVSREDSVKP--GA 121
Query: 161 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEA- 218
+FV + L++ F G + +++ED+ GK RG VTF+
Sbjct: 122 HLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVD 181
Query: 219 ---VQAISMFNG------QLLFDRPMHVKMDERALPKGDFFPPERPQQLPHGLGGIGMGL 269
VQ NG + L + M +R G R G G G G
Sbjct: 182 KIVVQKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGG 241
Query: 270 ---GPGGQPIDANHLNKGIGMGNIGPAGMGMEGIGFGINKMGGMEGPFGGGMENMGRFGS 326
G GG G G+ G G G +G +G G +GGG G G
Sbjct: 242 NFGGRGGYGGGGGGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGG 301
Query: 327 GMNMGRINEILSNALKRGEIIAKQGGGGGG----GSVPGIERMGPGIDRLGGAGMERMGA 382
G G + + G GGGG G+ G ++ G + G G G+
Sbjct: 302 GYGGGGGYDGYNEG---GNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGS 358
Query: 383 GLGHG 387
G G
Sbjct: 359 PYGGG 363
Score = 30.0 bits (66), Expect = 7.5
Identities = 22/63 (34%), Positives = 25/63 (39%), Gaps = 7/63 (11%)
Query: 543 ERMGANSLERMGPAMGPALGAGIERMGLAMGGGGGASFDRAIEME-RGNFGGSFAGSFGG 601
E A S G G +G G GGGG +F R RG +GG GS G
Sbjct: 206 EMQSAGSQRGRGGGSGNFMGRG------GNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGS 259
Query: 602 AGG 604
GG
Sbjct: 260 YGG 262
>gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d
[Homo sapiens]
Length = 287
Score = 57.4 bits (137), Expect = 4e-08
Identities = 57/215 (26%), Positives = 93/215 (43%), Gaps = 25/215 (11%)
Query: 2 AAGVEAAAEVAATEIKMEEESGAPGVPSGNGAPGPKGEGERPAQNEKRKEKNIKRGGNRF 61
+AG + A VAAT+ G G + G +G A++E G +
Sbjct: 22 SAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS---AESE----------GAKI 68
Query: 62 EPYANPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMD-AEGKSRGCAVVEFK 120
+ N + FI + +D + LKD K GEV L +D G+SRG V FK
Sbjct: 69 DASKNEEDEGKMFIGGLSWDTTKKDLKDYF-SKFGEVVDCTLKLDPITGRSRGFGFVLFK 127
Query: 121 MEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHARRAMQKAGRLGSTVFVANLDYKVGWKK 180
ES+ K + +H L+G+ + DP A + + + +FV L +K
Sbjct: 128 ESESVDKVMD-QKEHKLNGKVI----DPKRAKAMKTKEPVKK----IFVGGLSPDTPEEK 178
Query: 181 LKEVFSMAGVVVRADI-LEDKDGKSRGIGTVTFEQ 214
++E F G V ++ +++K K RG +TF++
Sbjct: 179 IREYFGGFGEVESIELPMDNKTNKRRGFCFITFKE 213
Score = 35.0 bits (79), Expect = 0.23
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 10/109 (9%)
Query: 167 VFVANLDYKVGWKKLKEVFSMAGVVVRADI-LEDKDGKSRGIGTVTFEQSIEAVQAI--- 222
+F+ L + K LK+ FS G VV + L+ G+SRG G V F++S E+V +
Sbjct: 80 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES-ESVDKVMDQ 138
Query: 223 --SMFNGQLLFD---RPMHVKMDERALPKGDFFPPERPQQLPHGLGGIG 266
NG+++ + M K + + G P +++ GG G
Sbjct: 139 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFG 187
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.138 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,136,554
Number of Sequences: 37866
Number of extensions: 1563102
Number of successful extensions: 14754
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 264
Number of HSP's that attempted gapping in prelim test: 9463
Number of HSP's gapped (non-prelim): 4557
length of query: 691
length of database: 18,247,518
effective HSP length: 109
effective length of query: 582
effective length of database: 14,120,124
effective search space: 8217912168
effective search space used: 8217912168
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.