Guide to the Human Genome
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Name: SART3 Sequence: fasta or formatted (963aa) NCBI GI: 7661952
Description:

squamous cell carcinoma antigen recognized by T cells 3

Referenced in:

Capping and Splicing

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.6        102           3
 C cysteine            1.6         15           1
 D aspartate           5.0         48           2
 E glutamate          12.0        116           4
 F phenylalanine       2.6         25           1
 G glycine             4.6         44           2
 H histidine           1.6         15           1
 I isoleucine          3.7         36           2
 K lysine              7.6         73           5
 L leucine             8.4         81           2
 M methionine          2.6         25           1
 N asparagine          3.0         29           2
 P proline             4.8         46           2
 Q glutamine           4.6         44           2
 R arginine            7.0         67           3
 S serine              5.8         56           2
 T threonine           3.3         32           1
 V valine              5.9         57           2
 W tryptophan          1.7         16           1
 Y tyrosine            3.7         36           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   squamous cell carcinoma antigen recognized by T cells... 
RBM19                 0.026   RNA binding motif protein 19 
RBM19                 0.026   RNA binding motif protein 19 
RBM19                 0.026   RNA binding motif protein 19 
U2AF2                 0.026   U2 (RNU2) small nuclear RNA auxiliary factor 2 isofo...
U2AF2                 0.025   U2 (RNU2) small nuclear RNA auxiliary factor 2 isofor...
NCL                   0.025   nucleolin 
RBM39                 0.023   RNA binding motif protein 39 isoform b 
RBM39                 0.023   RNA binding motif protein 39 isoform a 
HNRNPM                0.022   heterogeneous nuclear ribonucleoprotein M isoform b...
PABPC4L               0.020   poly(A) binding protein, cytoplasmic 4-like 
DAZAP1                0.020   DAZ associated protein 1 isoform a 
DAZAP1                0.020   DAZ associated protein 1 isoform b 
CUGBP1                0.020   CUG triplet repeat, RNA-binding protein 1 isoform 3 ...
CUGBP1                0.019   CUG triplet repeat, RNA-binding protein 1 isoform 1 [...
CUGBP1                0.019   CUG triplet repeat, RNA-binding protein 1 isoform 2 ...
RBM46                 0.019   RNA binding motif protein 46 
RBM34                 0.018   RNA binding motif protein 34 isoform 1 
RBM47                 0.018   RNA binding motif protein 47 isoform a 
RBM47                 0.018   RNA binding motif protein 47 isoform b 
PABPC4                0.018   poly A binding protein, cytoplasmic 4 isoform 3 [Ho...
PABPC4                0.018   poly A binding protein, cytoplasmic 4 isoform 2 [Homo...
PABPC4                0.018   poly A binding protein, cytoplasmic 4 isoform 1 [Ho...
PABPC1L               0.018   poly(A)-binding protein, cytoplasmic 1-like 
PABPC5                0.018   poly(A) binding protein, cytoplasmic 5 
TIA1                  0.018   TIA1 protein isoform 2 
TNRC4                 0.018   trinucleotide repeat containing 4 
BRUNOL6               0.017   bruno-like 6, RNA binding protein 
HNRNPR                0.017   heterogeneous nuclear ribonucleoprotein R isoform 3...
HNRNPR                0.017   heterogeneous nuclear ribonucleoprotein R isoform 1...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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