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Search of human proteins with 157388904
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|157388904 HEAT repeat containing 2 [Homo sapiens]
(855 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|157388904 HEAT repeat containing 2 [Homo sapiens] 1682 0.0
gi|54607053 GCN1 general control of amino-acid synthesis 1-like ... 50 1e-05
gi|32455246 beta isoform of regulatory subunit A, protein phosph... 41 0.005
gi|32455244 beta isoform of regulatory subunit A, protein phosph... 41 0.005
gi|54112117 splicing factor 3b, subunit 1 isoform 1 [Homo sapiens] 39 0.016
gi|21361399 alpha isoform of regulatory subunit A, protein phosp... 35 0.23
gi|122937211 KIAA0368 protein [Homo sapiens] 35 0.23
gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens] 34 0.50
gi|76563908 hypothetical protein LOC169436 [Homo sapiens] 34 0.66
gi|170763479 MMS19 nucleotide excision repair homolog [Homo sapi... 33 0.86
gi|209969838 transportin 2 (importin 3, karyopherin beta 2b) iso... 33 1.1
gi|209969836 transportin 2 (importin 3, karyopherin beta 2b) iso... 33 1.1
gi|48675813 transportin 2 (importin 3, karyopherin beta 2b) isof... 33 1.1
gi|109150431 ring finger protein 31 [Homo sapiens] 33 1.5
gi|207452735 epiplakin 1 [Homo sapiens] 33 1.5
gi|216548056 cardiotrophin 1 isoform 2 [Homo sapiens] 32 2.5
gi|4503121 cardiotrophin 1 isoform 1 [Homo sapiens] 32 2.5
gi|239757128 PREDICTED: similar to mCG141871 [Homo sapiens] 32 3.3
gi|113428072 PREDICTED: similar to mCG141871 [Homo sapiens] 32 3.3
gi|239755571 PREDICTED: hypothetical protein [Homo sapiens] 31 4.3
gi|239744417 PREDICTED: similar to hCG2023245 [Homo sapiens] 31 4.3
gi|239741603 PREDICTED: hypothetical protein XP_002342247 [Homo ... 31 4.3
gi|4507691 transformation/transcription domain-associated protei... 31 4.3
gi|23510381 transportin 1 isoform 2 [Homo sapiens] 31 4.3
gi|133925811 transportin 1 isoform 1 [Homo sapiens] 31 4.3
gi|95147559 ankyrin repeat domain 43 [Homo sapiens] 31 4.3
gi|164698500 septin 9 isoform e [Homo sapiens] 31 5.6
gi|164698498 septin 9 isoform b [Homo sapiens] 31 5.6
gi|164698496 septin 9 isoform e [Homo sapiens] 31 5.6
gi|164698494 septin 9 isoform a [Homo sapiens] 31 5.6
>gi|157388904 HEAT repeat containing 2 [Homo sapiens]
Length = 855
Score = 1682 bits (4356), Expect = 0.0
Identities = 855/855 (100%), Positives = 855/855 (100%)
Query: 1 MAALGVAEAVAAPHPAEGAETAEAVELSRALSRLLPGLEADSKPGRRRALEALRRALEEP 60
MAALGVAEAVAAPHPAEGAETAEAVELSRALSRLLPGLEADSKPGRRRALEALRRALEEP
Sbjct: 1 MAALGVAEAVAAPHPAEGAETAEAVELSRALSRLLPGLEADSKPGRRRALEALRRALEEP 60
Query: 61 GPAADPTAFQGPWARLLLPRLLRCLSDPAEGCRALAVHLLDLGLRRAARPRDALPRLLPA 120
GPAADPTAFQGPWARLLLPRLLRCLSDPAEGCRALAVHLLDLGLRRAARPRDALPRLLPA
Sbjct: 61 GPAADPTAFQGPWARLLLPRLLRCLSDPAEGCRALAVHLLDLGLRRAARPRDALPRLLPA 120
Query: 121 LAARLAGPVPARRPPEACEELRLALVQLLGLAVDLCGAALAPHLDDALRALRCSLLDPFA 180
LAARLAGPVPARRPPEACEELRLALVQLLGLAVDLCGAALAPHLDDALRALRCSLLDPFA
Sbjct: 121 LAARLAGPVPARRPPEACEELRLALVQLLGLAVDLCGAALAPHLDDALRALRCSLLDPFA 180
Query: 181 AVRRESCSCAAALAQATPDHFHMQSESLIGPLMQTISHQHWKVRVAAIEATGAVIHFGNG 240
AVRRESCSCAAALAQATPDHFHMQSESLIGPLMQTISHQHWKVRVAAIEATGAVIHFGNG
Sbjct: 181 AVRRESCSCAAALAQATPDHFHMQSESLIGPLMQTISHQHWKVRVAAIEATGAVIHFGNG 240
Query: 241 KSVDDVLSHFAQRLFDDVPQVRRAVASVVGGWLLCLRDRYSFFHKLIPLLLSSLNDEVPE 300
KSVDDVLSHFAQRLFDDVPQVRRAVASVVGGWLLCLRDRYSFFHKLIPLLLSSLNDEVPE
Sbjct: 241 KSVDDVLSHFAQRLFDDVPQVRRAVASVVGGWLLCLRDRYSFFHKLIPLLLSSLNDEVPE 300
Query: 301 VRQLAASLWEDVGLQWQKENEEDLKDKLDFAPPTPPHYPPHERRPVLGCRELVFRNLSKI 360
VRQLAASLWEDVGLQWQKENEEDLKDKLDFAPPTPPHYPPHERRPVLGCRELVFRNLSKI
Sbjct: 301 VRQLAASLWEDVGLQWQKENEEDLKDKLDFAPPTPPHYPPHERRPVLGCRELVFRNLSKI 360
Query: 361 LPALCHDITDWVVGTRVKSAQLLPVLLLHAEDHATQHLEVVLRTLFQACTDEEAAVVQSC 420
LPALCHDITDWVVGTRVKSAQLLPVLLLHAEDHATQHLEVVLRTLFQACTDEEAAVVQSC
Sbjct: 361 LPALCHDITDWVVGTRVKSAQLLPVLLLHAEDHATQHLEVVLRTLFQACTDEEAAVVQSC 420
Query: 421 TRSAELVGTFVSPEVFLKLILSTLKKTPSASGLLVLASAMRGCPREALQPHLAAIATELA 480
TRSAELVGTFVSPEVFLKLILSTLKKTPSASGLLVLASAMRGCPREALQPHLAAIATELA
Sbjct: 421 TRSAELVGTFVSPEVFLKLILSTLKKTPSASGLLVLASAMRGCPREALQPHLAAIATELA 480
Query: 481 QAHICQASENDLYLERLLLCVQALVSVCHEDCGVASLQLLDVLLTIVALAGATGLRDKAQ 540
QAHICQASENDLYLERLLLCVQALVSVCHEDCGVASLQLLDVLLTIVALAGATGLRDKAQ
Sbjct: 481 QAHICQASENDLYLERLLLCVQALVSVCHEDCGVASLQLLDVLLTIVALAGATGLRDKAQ 540
Query: 541 ETMDSLAMVEGVSSCQDLYRKHIGPLLERVTASHLDWTAHSPELLQFSVIVAQSGPALGE 600
ETMDSLAMVEGVSSCQDLYRKHIGPLLERVTASHLDWTAHSPELLQFSVIVAQSGPALGE
Sbjct: 541 ETMDSLAMVEGVSSCQDLYRKHIGPLLERVTASHLDWTAHSPELLQFSVIVAQSGPALGE 600
Query: 601 ALPHVVPTLRACLQPSQDPQMRLKLFSILSTVLLRATDTINSQGQFPSYLETVTKDILAP 660
ALPHVVPTLRACLQPSQDPQMRLKLFSILSTVLLRATDTINSQGQFPSYLETVTKDILAP
Sbjct: 601 ALPHVVPTLRACLQPSQDPQMRLKLFSILSTVLLRATDTINSQGQFPSYLETVTKDILAP 660
Query: 661 NLQWHAGRTAAAIRTAAVSCLWALTSSEVLSAEQIRDVQETLMPQVLTTLEEDSKMTRLI 720
NLQWHAGRTAAAIRTAAVSCLWALTSSEVLSAEQIRDVQETLMPQVLTTLEEDSKMTRLI
Sbjct: 661 NLQWHAGRTAAAIRTAAVSCLWALTSSEVLSAEQIRDVQETLMPQVLTTLEEDSKMTRLI 720
Query: 721 SCRIINTFLKTSGGMTDPEKLIRIYPELLKRLDDVSNDVRMAAASTLVTWLQCVKGANAK 780
SCRIINTFLKTSGGMTDPEKLIRIYPELLKRLDDVSNDVRMAAASTLVTWLQCVKGANAK
Sbjct: 721 SCRIINTFLKTSGGMTDPEKLIRIYPELLKRLDDVSNDVRMAAASTLVTWLQCVKGANAK 780
Query: 781 SYYQSSVQYLYRELLVHLDDPERAIQDAILEVLKEGSGLFPDLLVRETEAVIHKHRSATY 840
SYYQSSVQYLYRELLVHLDDPERAIQDAILEVLKEGSGLFPDLLVRETEAVIHKHRSATY
Sbjct: 781 SYYQSSVQYLYRELLVHLDDPERAIQDAILEVLKEGSGLFPDLLVRETEAVIHKHRSATY 840
Query: 841 CEQLLQHVQAVPATQ 855
CEQLLQHVQAVPATQ
Sbjct: 841 CEQLLQHVQAVPATQ 855
>gi|54607053 GCN1 general control of amino-acid synthesis 1-like 1
[Homo sapiens]
Length = 2671
Score = 49.7 bits (117), Expect = 1e-05
Identities = 65/287 (22%), Positives = 115/287 (40%), Gaps = 27/287 (9%)
Query: 26 ELSRALSRLLPGLEADSKPGRRRALEALRRALEEPGPAADPTAFQGPWARLLLPRLLRCL 85
+LS L ++P L + +A ++AL + G + + P + P LL L
Sbjct: 1531 QLSSCLPNIVPKLTEVLTDSHVKVQKAGQQALRQIG-----SVIRNPEILAIAPVLLDAL 1585
Query: 86 SDPAEGCRALAVHLLDLGLRRAARPRDALPRLLPALAARLAGPVPARRPPEACEELRLAL 145
+DP+ + LLD + A + L P+ R + + R
Sbjct: 1586 TDPSRKTQKCLQTLLDT----------KFVHFIDAPSLALIMPIVQRAFQDRSTDTRKMA 1635
Query: 146 VQLLGLAVDLCGAA-LAPHLDDALRALRCSLLDPFAAVRRESCSCAAALAQATPDHFHMQ 204
Q++G L LAP+L L+ SLLDP VR S A+ + +
Sbjct: 1636 AQIIGNMYSLTDQKDLAPYLPSVTPGLKASLLDPVPEVRTVSAKALGAMVKGMGESCF-- 1693
Query: 205 SESLIGPLMQTISHQHWKVRVAAIEATGAVIHFGNG-----KSVDDVLSHFAQRLFDDVP 259
E L+ LM+T++++ V + A + G G K + ++++ ++ D P
Sbjct: 1694 -EDLLPWLMETLTYEQSSVDRSGAAQGLAEVMAGLGVEKLEKLMPEIVATASK--VDIAP 1750
Query: 260 QVRRAVASVVGGWLLCLRDRYS-FFHKLIPLLLSSLNDEVPEVRQLA 305
VR + + D+++ + +IP +L +L DE VR A
Sbjct: 1751 HVRDGYIMMFNYLPITFGDKFTPYVGPIIPCILKALADENEFVRDTA 1797
Score = 41.6 bits (96), Expect = 0.003
Identities = 132/595 (22%), Positives = 219/595 (36%), Gaps = 66/595 (11%)
Query: 83 RCLSDPAEGCRALAVHLLDLGLRRAA-RPRDALPRLLPALAARLAGPVPARRPPEACEEL 141
R +S AE AL + L+ GL R R + +LL L ++G A E+
Sbjct: 1803 RVISMYAETAIALLLPQLEQGLFDDLWRIRFSSVQLLGDLLFHISGVTGKMTTETASEDD 1862
Query: 142 RLALVQLLGLAVDLCGAALAPHLDDALRALRCSLLDPFAAVRRESCSCAAALAQATPDHF 201
Q + G + L L D VR+ S + TP
Sbjct: 1863 NFGTAQSNKAIITALGVE---RRNRVLAGLYMGRSDTQLVVRQASLHVWKIVVSNTPRTL 1919
Query: 202 HMQSESLIGPLMQTISHQHWKVRVAAIEATGAVIHFGNGKSVDDVLSHFAQRLFDDVPQV 261
+L G L+ ++ R A G ++ K + +++ + L
Sbjct: 1920 REILPTLFGLLLGFLASTCADKRTIAARTLGDLVRKLGEKILPEIIPILEEGLRSQKSDE 1979
Query: 262 RRAVASVVGGWLLCL-RDRYSFFHK-LIPLLLSSLNDEVPEVRQLAASLWEDVGLQWQKE 319
R+ V + + RD +F + L+P +L D + EVR+ AA +E +
Sbjct: 1980 RQGVCIGLSEIMKSTSRDAVLYFSESLVPTARKALCDPLEEVREAAAKTFEQLH---STI 2036
Query: 320 NEEDLKDKLDFAPPTPPHYPPHERRPVLGCRELVFRNLSKILPALCHDITDWVVGTRVKS 379
+ L+D L F E + G ++++ +LP L +T V TRV
Sbjct: 2037 GHQALEDILPFLLKQLDDEEVSEFA-LDGLKQVMAIKSRVVLPYLVPKLTTPPVNTRV-- 2093
Query: 380 AQLLPVLLLHAEDHATQHLEVVLRTLFQAC-----TDEEAAVVQSC-------------- 420
L L A D T+HL V+L + A T +E + +C
Sbjct: 2094 ---LAFLSSVAGDALTRHLGVILPAVMLALKEKLGTPDEQLEMANCQAVILSVEDDTGHR 2150
Query: 421 ---------TRSAELVGTFVSPEVFLKLILSTLKKTPSA------SGLLVLASAMRGCPR 465
TRS E VG + + L + S K ++ SGL+ L +
Sbjct: 2151 IIIEDLLEATRSPE-VGMRQAAAIILNIYCSRSKADYTSHLRSLVSGLIRLFNDSSPVVL 2209
Query: 466 EALQPHLAAIATELAQAHICQASENDLYLERLLLCVQA----LVSVCHEDCGVASLQLLD 521
E L AI +L + E +L+ E L+ ++ + C GV S+
Sbjct: 2210 EESWDALNAITKKLDAGNQLALIE-ELHKEIRLIGNESKGEHVPGFCLPKKGVTSI---- 2264
Query: 522 VLLTIVALAGATGLRDKAQETMDSLAMVEGVSSCQDLYRKHI---GPLLERVTASHLDWT 578
L ++ TG ++ +E +L +V ++S L + GPL+ R+ W
Sbjct: 2265 --LPVLREGVLTGSPEQKEEAAKALGLVIRLTSADALRPSVVSITGPLI-RILGDRFSWN 2321
Query: 579 AHSPELLQFSVIVAQSGPALGEALPHVVPTLRACLQPSQDPQMRLKLFSILSTVL 633
+ L S+++A+ G AL LP + T LQ S + +RLK L ++
Sbjct: 2322 VKAALLETLSLLLAKVGIALKPFLPQLQTTFTKALQDS-NRGVRLKAADALGKLI 2375
>gi|32455246 beta isoform of regulatory subunit A, protein
phosphatase 2 isoform a [Homo sapiens]
Length = 601
Score = 40.8 bits (94), Expect = 0.005
Identities = 45/192 (23%), Positives = 75/192 (39%), Gaps = 17/192 (8%)
Query: 139 EELRLALVQLLGLAVDLCGA-----ALAPHLDDALRALRCSLLDPFAAVRRESCSCAAAL 193
+E+ LAL + LG L G L P L++ + D +L
Sbjct: 75 DEVLLALAEQLGNFTGLVGGPDFAHCLLPPLENLATVEETVVRD----------KAVESL 124
Query: 194 AQATPDHFHMQSESLIGPLMQTISHQHWKV-RVAAIEATGAVIHFGNGKSVDDVLSHFAQ 252
Q + +H + E+ PL++ ++ W R +A + ++ F
Sbjct: 125 RQISQEHTPVALEAYFVPLVKRLASGDWFTSRTSACGLFSVCYPRASNAVKAEIRQQFRS 184
Query: 253 RLFDDVPQVRRAVASVVGGWLLCLRDRYSFFHKLIPLLLSSLNDEVPEVRQLAASLWEDV 312
DD P VRRA AS +G + L + S +++PL S +DE VR LA +
Sbjct: 185 LCSDDTPMVRRAAASKLGEFAKVL-ELDSVKSEIVPLFTSLASDEQDSVRLLAVEACVSI 243
Query: 313 GLQWQKENEEDL 324
+++ E L
Sbjct: 244 AQLLSQDDLETL 255
Score = 34.7 bits (78), Expect = 0.39
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 243 VDDVLSHFAQRLFDDVPQVRRAVASVVGGWLLCLRDRYSFFHKLIPLLLSSLNDEVPEVR 302
++ +L + + + D V+ A+ASV+ G L + H L+PL L+ L DE P+VR
Sbjct: 335 MNQILPYIKELVSDTNQHVKSALASVIMGLSTILGKENTIEH-LLPLFLAQLKDECPDVR 393
>gi|32455244 beta isoform of regulatory subunit A, protein
phosphatase 2 isoform b [Homo sapiens]
Length = 667
Score = 40.8 bits (94), Expect = 0.005
Identities = 45/192 (23%), Positives = 75/192 (39%), Gaps = 17/192 (8%)
Query: 139 EELRLALVQLLGLAVDLCGA-----ALAPHLDDALRALRCSLLDPFAAVRRESCSCAAAL 193
+E+ LAL + LG L G L P L++ + D +L
Sbjct: 75 DEVLLALAEQLGNFTGLVGGPDFAHCLLPPLENLATVEETVVRD----------KAVESL 124
Query: 194 AQATPDHFHMQSESLIGPLMQTISHQHWKV-RVAAIEATGAVIHFGNGKSVDDVLSHFAQ 252
Q + +H + E+ PL++ ++ W R +A + ++ F
Sbjct: 125 RQISQEHTPVALEAYFVPLVKRLASGDWFTSRTSACGLFSVCYPRASNAVKAEIRQQFRS 184
Query: 253 RLFDDVPQVRRAVASVVGGWLLCLRDRYSFFHKLIPLLLSSLNDEVPEVRQLAASLWEDV 312
DD P VRRA AS +G + L + S +++PL S +DE VR LA +
Sbjct: 185 LCSDDTPMVRRAAASKLGEFAKVL-ELDSVKSEIVPLFTSLASDEQDSVRLLAVEACVSI 243
Query: 313 GLQWQKENEEDL 324
+++ E L
Sbjct: 244 AQLLSQDDLETL 255
Score = 34.7 bits (78), Expect = 0.39
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 243 VDDVLSHFAQRLFDDVPQVRRAVASVVGGWLLCLRDRYSFFHKLIPLLLSSLNDEVPEVR 302
++ +L + + + D V+ A+ASV+ G L + H L+PL L+ L DE P+VR
Sbjct: 335 MNQILPYIKELVSDTNQHVKSALASVIMGLSTILGKENTIEH-LLPLFLAQLKDECPDVR 393
>gi|54112117 splicing factor 3b, subunit 1 isoform 1 [Homo sapiens]
Length = 1304
Score = 39.3 bits (90), Expect = 0.016
Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 8/122 (6%)
Query: 114 LPRLLPALAARLAGPVPARRPPEACEELRLALVQLLGLAVDLCGAALAPHLDDALRALRC 173
+P LLP L A V + + +VQ + + L G A+ PHL + +
Sbjct: 641 IPSLLPFLKA-----VCKSKKSWQARHTGIKIVQQIAI---LMGCAILPHLRSLVEIIEH 692
Query: 174 SLLDPFAAVRRESCSCAAALAQATPDHFHMQSESLIGPLMQTISHQHWKVRVAAIEATGA 233
L+D VR S AALA+A + +S++ PL + I K A ++A G
Sbjct: 693 GLVDEQQKVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGY 752
Query: 234 VI 235
+I
Sbjct: 753 LI 754
>gi|21361399 alpha isoform of regulatory subunit A, protein
phosphatase 2 [Homo sapiens]
Length = 589
Score = 35.4 bits (80), Expect = 0.23
Identities = 48/191 (25%), Positives = 77/191 (40%), Gaps = 15/191 (7%)
Query: 139 EELRLALVQLLGLAVDLCGAALAPHLDDALRALRCSL--LDPFAAVRRESCSCAAALAQA 196
+E+ LAL + LG L G H C L L+ A V A +
Sbjct: 63 DEVLLALAEQLGTFTTLVGGPEYVH---------CLLPPLESLATVEETVVRDKAVESLR 113
Query: 197 TPDHFHMQS--ESLIGPLMQTISHQHWKVRVAAIEATGAVIHFGNGKSVDDVLSHFAQRL 254
H H S E+ PL++ ++ W + +V + +V L + + L
Sbjct: 114 AISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNL 173
Query: 255 F-DDVPQVRRAVASVVGGWLLCLRDRYSFFHKLIPLLLSSLNDEVPEVRQLAASLWEDVG 313
DD P VRRA AS +G + L + + ++IP+ + +DE VR LA ++
Sbjct: 174 CSDDTPMVRRAAASKLGEFAKVL-ELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIA 232
Query: 314 LQWQKENEEDL 324
+E+ E L
Sbjct: 233 QLLPQEDLEAL 243
Score = 31.6 bits (70), Expect = 3.3
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 243 VDDVLSHFAQRLFDDVPQVRRAVASVVGGWLLCLRDRYSFFHKLIPLLLSSLNDEVPEVR 302
+ +L + + D V+ A+ASV+ G L + H L+PL L+ L DE PEVR
Sbjct: 323 MSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEH-LLPLFLAQLKDECPEVR 381
>gi|122937211 KIAA0368 protein [Homo sapiens]
Length = 2017
Score = 35.4 bits (80), Expect = 0.23
Identities = 62/260 (23%), Positives = 101/260 (38%), Gaps = 42/260 (16%)
Query: 525 TIVALAGATGLRDKAQ--ETMDSLAMVEGVSSCQDLYRKHIGPLLERVTASHLDWTAHSP 582
T+V GA G Q T L + S DL K + + H W +
Sbjct: 1218 TVVFQGGALGKTPDGQGLSTYKELCSLASDLSQPDLVYKFMN-----LANHHAMWNSRKG 1272
Query: 583 ELLQFSVIVAQSGPALGEALPHVVPTLRACLQPSQDPQM--RLKLFSILSTVLLRATDTI 640
F+VI ++G L LP +VP L + DP + R + SI + + +
Sbjct: 1273 AAFGFNVIATRAGEQLAPFLPQLVPRL---YRYQFDPNLGIRQAMTSIWNAL-------V 1322
Query: 641 NSQGQFPSYLETVTKDILAPNLQWHAGRTAAAIRTAAVSCLWALTSSEVLSAEQIRDVQE 700
+ YL+ + +D L NL T+ R SC L +++L + D+ +
Sbjct: 1323 TDKSMVDKYLKEILQD-LVKNL------TSNMWRVRESSC---LALNDLLRGRPLDDIID 1372
Query: 701 TLMPQVLTTL----EEDSKMTRLISCRIINTFLKTSGGMTDPEK-------LIRIYPELL 749
L P++ TL ++ + R + + T K M DP K + + P LL
Sbjct: 1373 KL-PEIWETLFRVQDDIKESVRKAAELALKTLSKVCVKMCDPAKGAAGQRTIAALLPCLL 1431
Query: 750 -KRLDDVSNDVRMAAASTLV 768
K + +VR + +TLV
Sbjct: 1432 DKGMMSTVTEVRALSINTLV 1451
Score = 31.2 bits (69), Expect = 4.3
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 5/119 (4%)
Query: 658 LAPNLQWHAGRTAAAIRTAAVSCLWALTSSEVLSAEQIRDVQETLMPQVLTTLEEDSKMT 717
L P L + IR A S AL + + + + ++++ + L+ + + +
Sbjct: 1295 LVPRLYRYQFDPNLGIRQAMTSIWNALVTDKSMVDKYLKEILQDLVKNLTSNMWR----V 1350
Query: 718 RLISCRIINTFLKTSGGMTDPEKLIRIYPELLKRLDDVSNDVRMAAASTLVTWLQ-CVK 775
R SC +N L+ +KL I+ L + DD+ VR AA L T + CVK
Sbjct: 1351 RESSCLALNDLLRGRPLDDIIDKLPEIWETLFRVQDDIKESVRKAAELALKTLSKVCVK 1409
>gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]
Length = 2303
Score = 34.3 bits (77), Expect = 0.50
Identities = 44/127 (34%), Positives = 50/127 (39%), Gaps = 36/127 (28%)
Query: 47 RRALEALRRALEEPGPAADPTAFQGPWA---RLLLPRLLRCLSDPAEGC------RALAV 97
RR L RA+ EPGP GP A RL L R+ LS +E R L
Sbjct: 1938 RRGPPPLARAVPEPGPRGRAGTEAGPGARGGRLGLVRVASALSSGSESSDRSGFRRQLTF 1997
Query: 98 HLLDLGLRR-----------AARPRDALPR----LLPAL-----------AARLAGPVPA 131
GLRR A+ P+ A PR LPA+ AA GP PA
Sbjct: 1998 IKESPGLRRRRSELSSAESAASAPQGASPRRGRPALPAVFLCSSRCEELRAAPRQGPAPA 2057
Query: 132 R-RPPEA 137
R RPP A
Sbjct: 2058 RQRPPAA 2064
>gi|76563908 hypothetical protein LOC169436 [Homo sapiens]
Length = 680
Score = 33.9 bits (76), Expect = 0.66
Identities = 52/257 (20%), Positives = 110/257 (42%), Gaps = 31/257 (12%)
Query: 598 LGEALPH-----------VVPTLRACLQ--PSQDPQMRLKLFSILSTVLLRATDTINSQG 644
LG+AL H + TL + LQ P ++P + + ++S+L+ + +++++ +
Sbjct: 397 LGQALVHHPEAKAPCNQAITSTLLSALQSHPEEEPLL-VMVYSLLAITTTQESESLSEEL 455
Query: 645 QFPSYLETVTKDILAPNLQWHAGRTAAAIRTAAVSCLWALTSSEVLSAEQIRDVQETLMP 704
Q LE + + + ++ + + + + LWAL ++ + + L+
Sbjct: 456 QNAGLLEHILEHL-------NSSLKSRDVCASGLGLLWALLLDGIIVNKAPLEKVPDLIS 508
Query: 705 QVLTTLEEDSKMTRLISCRIINTFLKTSGGMTDP--EKLIRIYPELLKRLDD----VSND 758
QVL T D +M SC + L G + + E+++ + + ++ D V+N
Sbjct: 509 QVLATYPADGEMAE-ASCGVF-WLLSLLGCIKEQQFEQVVALLLQSIRLCQDRALLVNNA 566
Query: 759 VRMAAASTLVTWLQCVKGANAKSYYQSSVQYLYRELLVHLDDPERAIQDAILEV-LKEGS 817
R A+ V+ L K + S + + +H DDPE +L V L
Sbjct: 567 YRGLASLVKVSELAAFK-VVVQEEGGSGLSLIKETYQLHRDDPEVVENVGMLLVHLASYE 625
Query: 818 GLFPDLLVRETEAVIHK 834
+ P+L+ +A++ +
Sbjct: 626 EILPELVSSSMKALLQE 642
>gi|170763479 MMS19 nucleotide excision repair homolog [Homo sapiens]
Length = 1030
Score = 33.5 bits (75), Expect = 0.86
Identities = 29/118 (24%), Positives = 45/118 (38%), Gaps = 3/118 (2%)
Query: 160 LAPHLDDALRALRCSLLDPFAAVRRESCSCAAALAQATPDHFHMQSESLIGPLMQTISHQ 219
L P L L L +L P V+ + SC L P + ++L+ + S
Sbjct: 907 LLPELPTLLSLLLEALSCPDCVVQLSTLSCLQPLLLEAPQVMSLHVDTLVTKFLNLSSSP 966
Query: 220 HWKVRVAAIEATGAVIHFGNGKSV---DDVLSHFAQRLFDDVPQVRRAVASVVGGWLL 274
VR+AA++ A+ + V+ A+ L D VR+ S G W L
Sbjct: 967 SMAVRIAALQCMHALTRLPTPVLLPYKPQVIRALAKPLDDKKRLVRKEAVSARGEWFL 1024
>gi|209969838 transportin 2 (importin 3, karyopherin beta 2b)
isoform 1 [Homo sapiens]
Length = 897
Score = 33.1 bits (74), Expect = 1.1
Identities = 39/172 (22%), Positives = 69/172 (40%), Gaps = 27/172 (15%)
Query: 702 LMPQVLTTLEEDSKMTRLISCRIINTFLKTSGGMTDPEKLIRIYPELLKRLDDVSNDVRM 761
L+P ++ L + + R I+C ++ + L + ELLKR+ D + V+
Sbjct: 436 LIPHLIQCLSDKKALVRSIACWTLSRYAHWVVSQPPDMHLKPLMTELLKRILDGNKRVQE 495
Query: 762 AAASTLVTWLQ--CVKGANAKSYYQSSV-----QYLYRELLV--------------HLDD 800
AA S T + C + SY ++ +Y ++ LL+ HL+
Sbjct: 496 AACSAFATLEEEACTELVPYLSYILDTLVFAFGKYQHKNLLILYDAIGTLADSVGHHLNQ 555
Query: 801 PE--RAIQDAIL----EVLKEGSGLFPDLLVRETEAVIHKHRSATYCEQLLQ 846
PE + + ++ E+ E LFP L + A + YCE + Q
Sbjct: 556 PEYIQKLMPPLIQKWNELKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQ 607
>gi|209969836 transportin 2 (importin 3, karyopherin beta 2b)
isoform 3 [Homo sapiens]
Length = 887
Score = 33.1 bits (74), Expect = 1.1
Identities = 39/172 (22%), Positives = 69/172 (40%), Gaps = 27/172 (15%)
Query: 702 LMPQVLTTLEEDSKMTRLISCRIINTFLKTSGGMTDPEKLIRIYPELLKRLDDVSNDVRM 761
L+P ++ L + + R I+C ++ + L + ELLKR+ D + V+
Sbjct: 436 LIPHLIQCLSDKKALVRSIACWTLSRYAHWVVSQPPDMHLKPLMTELLKRILDGNKRVQE 495
Query: 762 AAASTLVTWLQ--CVKGANAKSYYQSSV-----QYLYRELLV--------------HLDD 800
AA S T + C + SY ++ +Y ++ LL+ HL+
Sbjct: 496 AACSAFATLEEEACTELVPYLSYILDTLVFAFGKYQHKNLLILYDAIGTLADSVGHHLNQ 555
Query: 801 PE--RAIQDAIL----EVLKEGSGLFPDLLVRETEAVIHKHRSATYCEQLLQ 846
PE + + ++ E+ E LFP L + A + YCE + Q
Sbjct: 556 PEYIQKLMPPLIQKWNELKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQ 607
>gi|48675813 transportin 2 (importin 3, karyopherin beta 2b) isoform
2 [Homo sapiens]
Length = 887
Score = 33.1 bits (74), Expect = 1.1
Identities = 39/172 (22%), Positives = 69/172 (40%), Gaps = 27/172 (15%)
Query: 702 LMPQVLTTLEEDSKMTRLISCRIINTFLKTSGGMTDPEKLIRIYPELLKRLDDVSNDVRM 761
L+P ++ L + + R I+C ++ + L + ELLKR+ D + V+
Sbjct: 436 LIPHLIQCLSDKKALVRSIACWTLSRYAHWVVSQPPDMHLKPLMTELLKRILDGNKRVQE 495
Query: 762 AAASTLVTWLQ--CVKGANAKSYYQSSV-----QYLYRELLV--------------HLDD 800
AA S T + C + SY ++ +Y ++ LL+ HL+
Sbjct: 496 AACSAFATLEEEACTELVPYLSYILDTLVFAFGKYQHKNLLILYDAIGTLADSVGHHLNQ 555
Query: 801 PE--RAIQDAIL----EVLKEGSGLFPDLLVRETEAVIHKHRSATYCEQLLQ 846
PE + + ++ E+ E LFP L + A + YCE + Q
Sbjct: 556 PEYIQKLMPPLIQKWNELKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQ 607
>gi|109150431 ring finger protein 31 [Homo sapiens]
Length = 1072
Score = 32.7 bits (73), Expect = 1.5
Identities = 46/164 (28%), Positives = 69/164 (42%), Gaps = 35/164 (21%)
Query: 15 PAEGAETA---EAVELSRALSRLLPGLEADSKPGRRRALEALRRALEEPGPAADPTAFQG 71
P EG+ A ++SRAL+ L +R+ LE R+ L + GP P+ + G
Sbjct: 590 PEEGSLQALFQHGGDVSRALTEL-----------QRQRLEPFRQRLWDSGPEPTPS-WDG 637
Query: 72 PWARLLLPRLLRCLSDPAEGCRALAVHLLDLGLRRAARPRDALPRLLPALAARLAGPVPA 131
P + L+ RLL + P+ G LA+ LL PR+ L V A
Sbjct: 638 PDKQSLVRRLLAVYALPSWGRAELALSLLQ------ETPRN----------YELGDVVEA 681
Query: 132 RRPPEACEELRLALVQLLGLAVDLCGAALAPHLDDALRALRCSL 175
R + R L +LL +CG AL + AL + C++
Sbjct: 682 VRHSQD----RAFLRRLLAQECAVCGWALPHNRMQALTSCECTI 721
>gi|207452735 epiplakin 1 [Homo sapiens]
Length = 5090
Score = 32.7 bits (73), Expect = 1.5
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 18 GAETAEAVELSRALSRLLPGLEADSKPGRRRALEALRRALEEPGPA 63
G+ T + L+R L+ ++ EA+ PG R L+ RR EPGPA
Sbjct: 2558 GSGTLDLPALTRRLTAIIE--EAEEAPGARPQLQDARRGPREPGPA 2601
>gi|216548056 cardiotrophin 1 isoform 2 [Homo sapiens]
Length = 200
Score = 32.0 bits (71), Expect = 2.5
Identities = 41/126 (32%), Positives = 48/126 (38%), Gaps = 28/126 (22%)
Query: 10 VAAPHPAE-GAETAEAVELSRALSRLLPGLEADSKPGRRRALEALRRALEEPGPAADPTA 68
++AP P+ G E + L A LP L L+A+ R E P A
Sbjct: 70 LSAPAPSHAGLPVHERLRLDAAALAALPPL-----------LDAVCRRQAELNPRA---- 114
Query: 69 FQGPWARLLLPRLLRCLSDPAEGCRAL--AVHLLDLGLRRAARPRDALPRLLPALAARLA 126
PRLLR L D A RAL AV L L A R A P A AA
Sbjct: 115 ----------PRLLRRLEDAARQARALGAAVEALLAALGAANRGPRAEPPAATASAASAT 164
Query: 127 GPVPAR 132
G PA+
Sbjct: 165 GVFPAK 170
>gi|4503121 cardiotrophin 1 isoform 1 [Homo sapiens]
Length = 201
Score = 32.0 bits (71), Expect = 2.5
Identities = 41/126 (32%), Positives = 48/126 (38%), Gaps = 28/126 (22%)
Query: 10 VAAPHPAE-GAETAEAVELSRALSRLLPGLEADSKPGRRRALEALRRALEEPGPAADPTA 68
++AP P+ G E + L A LP L L+A+ R E P A
Sbjct: 71 LSAPAPSHAGLPVHERLRLDAAALAALPPL-----------LDAVCRRQAELNPRA---- 115
Query: 69 FQGPWARLLLPRLLRCLSDPAEGCRAL--AVHLLDLGLRRAARPRDALPRLLPALAARLA 126
PRLLR L D A RAL AV L L A R A P A AA
Sbjct: 116 ----------PRLLRRLEDAARQARALGAAVEALLAALGAANRGPRAEPPAATASAASAT 165
Query: 127 GPVPAR 132
G PA+
Sbjct: 166 GVFPAK 171
>gi|239757128 PREDICTED: similar to mCG141871 [Homo sapiens]
Length = 306
Score = 31.6 bits (70), Expect = 3.3
Identities = 44/125 (35%), Positives = 50/125 (40%), Gaps = 18/125 (14%)
Query: 46 RRRALEALRRALEEPGPAADPTAFQGPWARLLLPRLLRCL---SDPAEGCRALAVHLLDL 102
R R L +RRA P P P P LP+ C S AEG A HL L
Sbjct: 175 RCRRLRGVRRA---PAPLTPPPP---PPPSRCLPQDEACADTGSGSAEGLAADGPHLHTL 228
Query: 103 G---LRRAARPRDALPRLLPALAARLAGPVPARRPPEACEELRLALVQLLGLAVDLCGAA 159
+ RP P+ +P A R P PA P A E A V L LA + GAA
Sbjct: 229 TQPIVVTVPRPPPRPPKSVPGRAVRPEPPAPA---PAALEP---APVVALVLAAFVLGAA 282
Query: 160 LAPHL 164
LA L
Sbjct: 283 LAAGL 287
>gi|113428072 PREDICTED: similar to mCG141871 [Homo sapiens]
Length = 358
Score = 31.6 bits (70), Expect = 3.3
Identities = 44/125 (35%), Positives = 50/125 (40%), Gaps = 18/125 (14%)
Query: 46 RRRALEALRRALEEPGPAADPTAFQGPWARLLLPRLLRCL---SDPAEGCRALAVHLLDL 102
R R L +RRA P P P P LP+ C S AEG A HL L
Sbjct: 227 RCRRLRGVRRA---PAPLTPPPP---PPPSRCLPQDEACADTGSGSAEGLAADGPHLHTL 280
Query: 103 G---LRRAARPRDALPRLLPALAARLAGPVPARRPPEACEELRLALVQLLGLAVDLCGAA 159
+ RP P+ +P A R P PA P A E A V L LA + GAA
Sbjct: 281 TQPIVVTVPRPPPRPPKSVPGRAVRPEPPAPA---PAALEP---APVVALVLAAFVLGAA 334
Query: 160 LAPHL 164
LA L
Sbjct: 335 LAAGL 339
>gi|239755571 PREDICTED: hypothetical protein [Homo sapiens]
Length = 261
Score = 31.2 bits (69), Expect = 4.3
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 29 RALSRLLPGLEADSKPGRRRALEALRRALEEPGPAADP-TAFQGP 72
RA R PG+ A G++RA E+ R EEP PA P +A +GP
Sbjct: 51 RAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGP 95
>gi|239744417 PREDICTED: similar to hCG2023245 [Homo sapiens]
Length = 364
Score = 31.2 bits (69), Expect = 4.3
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 29 RALSRLLPGLEADSKPGRRRALEALRRALEEPGPAADP-TAFQGP 72
RA R PG+ A G++RA E+ R EEP PA P +A +GP
Sbjct: 154 RAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGP 198
>gi|239741603 PREDICTED: hypothetical protein XP_002342247 [Homo
sapiens]
Length = 351
Score = 31.2 bits (69), Expect = 4.3
Identities = 21/48 (43%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 115 PRLLPALAARLAGPVPARRPPEACEELRLALVQLLGLAVDLCGAALAP 162
PR PA AAR P P RRPP A + + +L L D G LAP
Sbjct: 163 PRAAPAPAAR-PSPDPGRRPPPAAPAPVVHVGPVLPLLHDPVGVPLAP 209
>gi|4507691 transformation/transcription domain-associated protein
[Homo sapiens]
Length = 3830
Score = 31.2 bits (69), Expect = 4.3
Identities = 26/122 (21%), Positives = 53/122 (43%), Gaps = 9/122 (7%)
Query: 693 EQIRDVQETLMPQVLTTLEEDSKMTRLISCRIINTFLKTSGGMT-DPEKLIRIY-----P 746
+ I+ V+ LM + TL + ++ R++ F ++ M + +KL + P
Sbjct: 863 DHIQPVRAELMQALWRTLRNPADSISHVAYRVLGKFGGSNRKMLKESQKLHYVVTEVQGP 922
Query: 747 ELLKRLDDVSNDVRMAAASTLVTWLQCVKGANAKSYYQSSVQYLYRELLV---HLDDPER 803
+ D +++ + T L C+K AN + YY+ + + LV L+D +
Sbjct: 923 SITVEFSDCKASLQLPMEKAIETALDCLKSANTEPYYRRQAWEVIKCFLVAMMSLEDNKH 982
Query: 804 AI 805
A+
Sbjct: 983 AL 984
>gi|23510381 transportin 1 isoform 2 [Homo sapiens]
Length = 890
Score = 31.2 bits (69), Expect = 4.3
Identities = 39/172 (22%), Positives = 71/172 (41%), Gaps = 27/172 (15%)
Query: 702 LMPQVLTTLEEDSKMTRLISCRIINTFLKTSGGMTDPEKLIRIYPELLKRLDDVSNDVRM 761
L+P ++ L + + R I+C ++ + L + ELLKR+ D + V+
Sbjct: 439 LIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQE 498
Query: 762 AAASTLVTWLQ--CVKGANAKSYYQSSV-----QYLYRELLV--------------HLDD 800
AA S T + C + +Y ++ +Y ++ LL+ HL+
Sbjct: 499 AACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNK 558
Query: 801 PE--RAIQDAILE---VLK-EGSGLFPDLLVRETEAVIHKHRSATYCEQLLQ 846
PE + + +++ +LK E LFP L + A + YCE + Q
Sbjct: 559 PEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQ 610
>gi|133925811 transportin 1 isoform 1 [Homo sapiens]
Length = 898
Score = 31.2 bits (69), Expect = 4.3
Identities = 39/172 (22%), Positives = 71/172 (41%), Gaps = 27/172 (15%)
Query: 702 LMPQVLTTLEEDSKMTRLISCRIINTFLKTSGGMTDPEKLIRIYPELLKRLDDVSNDVRM 761
L+P ++ L + + R I+C ++ + L + ELLKR+ D + V+
Sbjct: 447 LIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQE 506
Query: 762 AAASTLVTWLQ--CVKGANAKSYYQSSV-----QYLYRELLV--------------HLDD 800
AA S T + C + +Y ++ +Y ++ LL+ HL+
Sbjct: 507 AACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNK 566
Query: 801 PE--RAIQDAILE---VLK-EGSGLFPDLLVRETEAVIHKHRSATYCEQLLQ 846
PE + + +++ +LK E LFP L + A + YCE + Q
Sbjct: 567 PEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQ 618
>gi|95147559 ankyrin repeat domain 43 [Homo sapiens]
Length = 549
Score = 31.2 bits (69), Expect = 4.3
Identities = 36/123 (29%), Positives = 50/123 (40%), Gaps = 10/123 (8%)
Query: 5 GVAEAVAAPHPAEGAETA-EAVELSRALSRLLPGLEADSKPGRRRALEALRRALEEPGPA 63
G A A P A+ A+EL++A R AD+ P R EA + P
Sbjct: 147 GPASEPAQPPGERSADPPLPALELAQATERP----SADAAPPPRAPSEAASPCSDPPDAE 202
Query: 64 ADPTAFQGPWARLLLPRLLRCLSDPAEGCRALAVHLLDLGLRRAARPRDALPRLLPALAA 123
P A +GP + +RC+ PA L + + GLRR + PR P L
Sbjct: 203 PGPGAAKGPPQQKPCMLPVRCVPAPA----TLRLRAEEPGLRRQL-SEEPSPRSSPLLLR 257
Query: 124 RLA 126
RL+
Sbjct: 258 RLS 260
>gi|164698500 septin 9 isoform e [Homo sapiens]
Length = 422
Score = 30.8 bits (68), Expect = 5.6
Identities = 21/59 (35%), Positives = 27/59 (45%)
Query: 7 AEAVAAPHPAEGAETAEAVELSRALSRLLPGLEADSKPGRRRALEALRRALEEPGPAAD 65
AEA AP PA+ E +E +S+ SRL P + R+ EA A G AD
Sbjct: 32 AEAPTAPSPAQTLENSEPAPVSQLQSRLEPKPQPPVAEATPRSQEATEAAPSCVGDMAD 90
>gi|164698498 septin 9 isoform b [Homo sapiens]
Length = 579
Score = 30.8 bits (68), Expect = 5.6
Identities = 21/59 (35%), Positives = 27/59 (45%)
Query: 7 AEAVAAPHPAEGAETAEAVELSRALSRLLPGLEADSKPGRRRALEALRRALEEPGPAAD 65
AEA AP PA+ E +E +S+ SRL P + R+ EA A G AD
Sbjct: 189 AEAPTAPSPAQTLENSEPAPVSQLQSRLEPKPQPPVAEATPRSQEATEAAPSCVGDMAD 247
>gi|164698496 septin 9 isoform e [Homo sapiens]
Length = 422
Score = 30.8 bits (68), Expect = 5.6
Identities = 21/59 (35%), Positives = 27/59 (45%)
Query: 7 AEAVAAPHPAEGAETAEAVELSRALSRLLPGLEADSKPGRRRALEALRRALEEPGPAAD 65
AEA AP PA+ E +E +S+ SRL P + R+ EA A G AD
Sbjct: 32 AEAPTAPSPAQTLENSEPAPVSQLQSRLEPKPQPPVAEATPRSQEATEAAPSCVGDMAD 90
>gi|164698494 septin 9 isoform a [Homo sapiens]
Length = 586
Score = 30.8 bits (68), Expect = 5.6
Identities = 21/59 (35%), Positives = 27/59 (45%)
Query: 7 AEAVAAPHPAEGAETAEAVELSRALSRLLPGLEADSKPGRRRALEALRRALEEPGPAAD 65
AEA AP PA+ E +E +S+ SRL P + R+ EA A G AD
Sbjct: 196 AEAPTAPSPAQTLENSEPAPVSQLQSRLEPKPQPPVAEATPRSQEATEAAPSCVGDMAD 254
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.134 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,861,552
Number of Sequences: 37866
Number of extensions: 1481895
Number of successful extensions: 5131
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 5063
Number of HSP's gapped (non-prelim): 130
length of query: 855
length of database: 18,247,518
effective HSP length: 111
effective length of query: 744
effective length of database: 14,044,392
effective search space: 10449027648
effective search space used: 10449027648
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.