Guide to the Human Genome
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Name: C9orf96 Sequence: fasta or formatted (680aa) NCBI GI: 76563908
Description:

hypothetical protein LOC169436

Referenced in:

Additional Serine / Threonine Protein Kinases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         40           2
 C cysteine            2.1         14           1
 D aspartate           4.3         29           2
 E glutamate           8.4         57           3
 F phenylalanine       2.4         16           1
 G glycine             5.3         36           2
 H histidine           2.9         20           2
 I isoleucine          5.0         34           2
 K lysine              5.1         35           2
 L leucine            15.7        107           3
 M methionine          3.5         24           1
 N asparagine          2.9         20           2
 P proline             4.9         33           2
 Q glutamine           5.0         34           2
 R arginine            3.5         24           3
 S serine              9.3         63           3
 T threonine           3.5         24           3
 V valine              7.4         50           3
 W tryptophan          1.3          9           1
 Y tyrosine            1.6         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC169436 
PAK7                  0.043   p21-activated kinase 7 
PAK7                  0.043   p21-activated kinase 7 
CDKL3                 0.038   cyclin-dependent kinase-like 3 isoform 1 
CDKL3                 0.038   cyclin-dependent kinase-like 3 isoform 2 
NEK2                  0.038   NIMA-related kinase 2 
NEK1                  0.038   NIMA-related kinase 1 
MAPK9                 0.037   mitogen-activated protein kinase 9 isoform JNK2 alph...
MAPK9                 0.037   mitogen-activated protein kinase 9 isoform JNK2 alph...
MAPK3                 0.037   mitogen-activated protein kinase 3 isoform 2 
MAPK3                 0.037   mitogen-activated protein kinase 3 isoform 1 
MAPK3                 0.037   mitogen-activated protein kinase 3 isoform 3 
NEK7                  0.037   NIMA-related kinase 7 
STK4                  0.036   serine/threonine kinase 4 
MAPK9                 0.036   mitogen-activated protein kinase 9 isoform JNK2 gam...
MAPK9                 0.036   mitogen-activated protein kinase 9 isoform JNK2 beta...
MAPK9                 0.036   mitogen-activated protein kinase 9 isoform JNK2 beta...
NEK3                  0.035   NIMA-related kinase 3 isoform b 
NEK3                  0.035   NIMA-related kinase 3 isoform a 
NEK3                  0.035   NIMA-related kinase 3 isoform a 
PAK1                  0.034   p21-activated kinase 1 isoform 1 
PAK1                  0.034   p21-activated kinase 1 isoform 2 
MAPK7                 0.034   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.034   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.034   mitogen-activated protein kinase 7 isoform 1 
MAPK8                 0.034   mitogen-activated protein kinase 8 isoform JNK1 beta...
MAPK8                 0.034   mitogen-activated protein kinase 8 isoform JNK1 beta...
PAK2                  0.033   p21-activated kinase 2 
NEK4                  0.033   NIMA-related kinase 4 
STK3                  0.033   serine/threonine kinase 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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