Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ALS2CR8 Sequence: fasta or formatted (725aa) NCBI GI: 157168372
Description:

amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 8

Not currently referenced in the text

Other entries for this name:
alt mRNA {725aa} amyotrophic lateral sclerosis 2 (juvenile) chromosome region, can...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4         32           1
 C cysteine            1.4         10           1
 D aspartate           4.1         30           1
 E glutamate           7.6         55           4
 F phenylalanine       2.3         17           2
 G glycine             4.7         34           2
 H histidine           2.2         16           1
 I isoleucine          4.8         35           2
 K lysine              5.0         36           2
 L leucine             9.1         66           3
 M methionine          2.1         15           2
 N asparagine          5.5         40           3
 P proline             7.6         55           2
 Q glutamine           7.7         56           2
 R arginine            4.3         31           2
 S serine              9.7         70           3
 T threonine           7.3         53           2
 V valine              7.3         53           2
 W tryptophan          0.7          5           1
 Y tyrosine            2.2         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   amyotrophic lateral sclerosis 2 (juvenile) chromoso... 
ALS2CR8               1.000   amyotrophic lateral sclerosis 2 (juvenile) chromoso...
MUC5AC                0.008   mucin 5AC 
R3HDM1                0.008   R3H domain containing 1 
GOLGA4                0.008   golgi autoantigen, golgin subfamily a, 4 
ALPK2                 0.007   heart alpha-kinase 
QSK                   0.007   serine/threonine-protein kinase QSK 
MUC5B                 0.006   mucin 5, subtype B, tracheobronchial 
PIK3AP1               0.006   phosphoinositide-3-kinase adaptor protein 1 
F5                    0.006   coagulation factor V precursor 
HSPA4L                0.006   heat shock 70kDa protein 4-like 
PLK2                  0.006   polo-like kinase 2 
TANC1                 0.005   tetratricopeptide repeat, ankyrin repeat and coiled...
HCFC2                 0.005   host cell factor C2 
PSMD4                 0.005   proteasome 26S non-ATPase subunit 4 
ARID1A                0.005   AT rich interactive domain 1A isoform a 
ARID1A                0.005   AT rich interactive domain 1A isoform b 
AHDC1                 0.005   AT hook, DNA binding motif, containing 1 
FLJ10357              0.004   hypothetical protein LOC55701 
SRGAP2                0.004   SLIT-ROBO Rho GTPase activating protein 2 isoform a...
SRGAP2                0.004   SLIT-ROBO Rho GTPase activating protein 2 isoform b...
MUC17                 0.004   mucin 17 
NHS                   0.004   Nance-Horan syndrome protein isoform 1 
NHS                   0.004   Nance-Horan syndrome protein isoform 2 
ANLN                  0.004   anillin, actin binding protein 
ACIN1                 0.004   apoptotic chromatin condensation inducer 1 
LOC100133714          0.004   PREDICTED: similar to Mucin-12, partial 
MUC12                 0.004   PREDICTED: mucin 12 
NFRKB                 0.004   nuclear factor related to kappaB binding protein is...
NFRKB                 0.004   nuclear factor related to kappaB binding protein iso...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press