Guide to the Human Genome
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Name: F5 Sequence: fasta or formatted (2224aa) NCBI GI: 105990535
Description:

coagulation factor V precursor

Referenced in:

Coagulation
Complement
Mammary Tissues

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4         97           3
 C cysteine            0.9         20           1
 D aspartate           6.0        133           3
 E glutamate           6.4        143           4
 F phenylalanine       3.5         78           2
 G glycine             5.2        116           2
 H histidine           3.1         69           2
 I isoleucine          5.5        123           2
 K lysine              5.7        127           4
 L leucine             9.1        202           4
 M methionine          2.4         54           1
 N asparagine          5.0        111           3
 P proline             6.8        151           3
 Q glutamine           4.6        103           2
 R arginine            4.1         92           2
 S serine             11.1        247           3
 T threonine           6.4        142           2
 V valine              4.0         90           2
 W tryptophan          2.0         44           2
 Y tyrosine            3.7         82           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   coagulation factor V precursor 
F8                    0.112   coagulation factor VIII isoform a precursor 
HEPHL1                0.092   hephaestin-like 1 
CP                    0.083   ceruloplasmin precursor 
HEPH                  0.082   hephaestin isoform a 
HEPH                  0.082   hephaestin isoform c 
HEPH                  0.075   hephaestin isoform b 
EDIL3                 0.053   EGF-like repeats and discoidin I-like domains-contai...
MFGE8                 0.050   milk fat globule-EGF factor 8 protein isoform a [Ho...
F8                    0.038   coagulation factor VIII isoform b precursor 
MFGE8                 0.037   milk fat globule-EGF factor 8 protein isoform b [Ho...
NRP2                  0.028   neuropilin 2 isoform 3 precursor 
NRP2                  0.028   neuropilin 2 isoform 5 precursor 
NRP2                  0.028   neuropilin 2 isoform 1 precursor 
NRP2                  0.028   neuropilin 2 isoform 4 precursor 
NRP2                  0.028   neuropilin 2 isoform 2 precursor 
NRP1                  0.025   neuropilin 1 isoform c 
NRP1                  0.025   neuropilin 1 isoform b 
NRP1                  0.025   neuropilin 1 isoform a 
DCBLD2                0.024   discoidin, CUB and LCCL domain containing 2 
NRP2                  0.022   neuropilin 2 isoform 6 precursor 
DCBLD1                0.022   discoidin, CUB and LCCL domain containing 1 
MLL2                  0.019   myeloid/lymphoid or mixed-lineage leukemia 2 
RS1                   0.019   X-linked juvenile retinoschisis protein precursor [H...
CPXM2                 0.016   carboxypeptidase X (M14 family), member 2 
AEBP1                 0.015   adipocyte enhancer binding protein 1 precursor [Homo...
CNTNAP2               0.015   cell recognition molecule Caspr2 precursor 
CNTNAP4               0.013   cell recognition protein CASPR4 isoform 2 
CNTNAP4               0.013   cell recognition protein CASPR4 isoform 1 
LOC389722             0.013   PREDICTED: hypothetical protein LOC389722 isoform 2...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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