Guide to the Human Genome
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Name: HSPA4L Sequence: fasta or formatted (839aa) NCBI GI: 31541941
Description:

heat shock 70kDa protein 4-like

Referenced in:

Heat-Shock Proteins and Chaperonins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         59           3
 C cysteine            2.1         18           1
 D aspartate           6.6         55           2
 E glutamate           8.8         74           3
 F phenylalanine       3.7         31           2
 G glycine             4.6         39           2
 H histidine           1.9         16           1
 I isoleucine          5.4         45           2
 K lysine              9.3         78           2
 L leucine             8.0         67           2
 M methionine          2.7         23           1
 N asparagine          5.1         43           1
 P proline             4.5         38           2
 Q glutamine           4.3         36           1
 R arginine            4.1         34           2
 S serine              7.0         59           2
 T threonine           4.6         39           2
 V valine              6.8         57           2
 W tryptophan          0.4          3           1
 Y tyrosine            3.0         25           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   heat shock 70kDa protein 4-like 
HSPA4                 0.644   heat shock 70kDa protein 4 
HSPH1                 0.586   heat shock 105kD 
HYOU1                 0.169   hypoxia up-regulated 1 precursor 
HYOU1                 0.169   hypoxia up-regulated 1 precursor 
HSPA1L                0.153   heat shock 70kDa protein 1-like 
HSPA1B                0.151   heat shock 70kDa protein 1B 
HSPA1A                0.151   heat shock 70kDa protein 1A 
HSPA6                 0.148   heat shock 70kDa protein 6 (HSP70B') 
HSPA8                 0.147   heat shock 70kDa protein 8 isoform 1 
HSPA8                 0.143   heat shock 70kDa protein 8 isoform 2 
HSPA2                 0.141   heat shock 70kDa protein 2 
HSPA5                 0.137   heat shock 70kDa protein 5 
HSPA9                 0.122   heat shock 70kDa protein 9 precursor 
HSPA14                0.099   heat shock 70kDa protein 14 isoform 1 
HSPA13                0.075   heat shock protein 70kDa family member 13 precursor ...
CDC42BPA              0.015   CDC42-binding protein kinase alpha isoform B 
CDC42BPA              0.014   CDC42-binding protein kinase alpha isoform A 
TACC3                 0.008   transforming, acidic coiled-coil containing protein 3...
MYH2                  0.008   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.008   myosin, heavy chain 2, skeletal muscle, adult [Homo...
TTN                   0.008   titin isoform N2-A 
RYR1                  0.008   skeletal muscle ryanodine receptor isoform 2 
RYR1                  0.008   skeletal muscle ryanodine receptor isoform 1 
MYH9                  0.007   myosin, heavy polypeptide 9, non-muscle 
KIF20B                0.007   M-phase phosphoprotein 1 
LOC727832             0.007   golgi autoantigen, golgin subfamily a-like 
LOC283767             0.007   golgi autoantigen, golgin subfamily a-like 
KTN1                  0.007   kinectin 1 isoform b 
MTUS1                 0.007   mitochondrial tumor suppressor 1 isoform 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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