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Search of human proteins with 110349759
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|110349759 NSL1, MIND kinetochore complex component isoform 1
[Homo sapiens]
(281 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|110349759 NSL1, MIND kinetochore complex component isoform 1 ... 571 e-163
gi|110349761 NSL1, MIND kinetochore complex component isoform 2 ... 338 4e-93
gi|95089461 discs large homolog 5 [Homo sapiens] 35 0.056
gi|21040368 beta-site APP-cleaving enzyme 1 isoform D preproprot... 33 0.21
gi|21040366 beta-site APP-cleaving enzyme 1 isoform B preproprot... 33 0.21
gi|21040364 beta-site APP-cleaving enzyme 1 isoform C preproprot... 33 0.21
gi|6912266 beta-site APP-cleaving enzyme 1 isoform A preproprote... 33 0.21
gi|38524622 formin binding protein 1 [Homo sapiens] 32 0.62
gi|11560152 zinc finger protein 335 [Homo sapiens] 32 0.62
gi|223555917 metadherin [Homo sapiens] 31 1.1
gi|93102364 SWAP-70 protein [Homo sapiens] 31 1.4
gi|239745983 PREDICTED: similar to Rho-associated, coiled-coil c... 30 1.8
gi|8922461 transmembrane protein 38B [Homo sapiens] 30 1.8
gi|115647981 glutamine and serine rich 1 [Homo sapiens] 30 1.8
gi|117968420 NUF2, NDC80 kinetochore complex component [Homo sap... 30 2.4
gi|117968353 NUF2, NDC80 kinetochore complex component [Homo sap... 30 2.4
gi|9256590 protocadherin alpha 5 isoform 1 precursor [Homo sapiens] 30 2.4
gi|14165416 protocadherin alpha 5 isoform 2 precursor [Homo sapi... 30 2.4
gi|71834863 Rho GTPase activating protein 5 isoform a [Homo sapi... 30 3.1
gi|71834861 Rho GTPase activating protein 5 isoform b [Homo sapi... 30 3.1
gi|21264320 NLR family, pyrin domain containing 6 [Homo sapiens] 30 3.1
gi|28269672 serologically defined colon cancer antigen 8 [Homo s... 29 4.0
gi|111118994 brain-specific angiogenesis inhibitor 1 precursor [... 29 5.3
gi|115511012 coiled-coil domain containing 136 [Homo sapiens] 28 6.9
gi|4885583 Rho-associated, coiled-coil containing protein kinase... 28 9.0
gi|239752561 PREDICTED: similar to Rho-associated, coiled-coil c... 28 9.0
gi|4759182 syntaxin 1A (brain) [Homo sapiens] 28 9.0
gi|110624781 myosin, heavy polypeptide 13, skeletal muscle [Homo... 28 9.0
gi|119964721 fer (fps/fes related) tyrosine kinase [Homo sapiens] 28 9.0
gi|24308223 hypothetical protein LOC57577 [Homo sapiens] 28 9.0
>gi|110349759 NSL1, MIND kinetochore complex component isoform 1
[Homo sapiens]
Length = 281
Score = 571 bits (1471), Expect = e-163
Identities = 281/281 (100%), Positives = 281/281 (100%)
Query: 1 MAGSPELVVLDPPWDKELAAGTESQALVSATPREDFRVRCTSKRAVTEMLQLCGRFVQKL 60
MAGSPELVVLDPPWDKELAAGTESQALVSATPREDFRVRCTSKRAVTEMLQLCGRFVQKL
Sbjct: 1 MAGSPELVVLDPPWDKELAAGTESQALVSATPREDFRVRCTSKRAVTEMLQLCGRFVQKL 60
Query: 61 GDALPEEIREPALRDAQWTFESAVQENISINGQAWQEASDNCFMDSDIKVLEDQFDEIIV 120
GDALPEEIREPALRDAQWTFESAVQENISINGQAWQEASDNCFMDSDIKVLEDQFDEIIV
Sbjct: 61 GDALPEEIREPALRDAQWTFESAVQENISINGQAWQEASDNCFMDSDIKVLEDQFDEIIV 120
Query: 121 DIATKRKQYPRKILECVIKTIKAKQEILKQYHPVVHPLDLKYDPDPAPHMENLKCRGETV 180
DIATKRKQYPRKILECVIKTIKAKQEILKQYHPVVHPLDLKYDPDPAPHMENLKCRGETV
Sbjct: 121 DIATKRKQYPRKILECVIKTIKAKQEILKQYHPVVHPLDLKYDPDPAPHMENLKCRGETV 180
Query: 181 AKEISEAMKSLPALIEQGEGFSQVLRMQPVIHLQRIHQEVFSSCHRKPDAKPENFITQIE 240
AKEISEAMKSLPALIEQGEGFSQVLRMQPVIHLQRIHQEVFSSCHRKPDAKPENFITQIE
Sbjct: 181 AKEISEAMKSLPALIEQGEGFSQVLRMQPVIHLQRIHQEVFSSCHRKPDAKPENFITQIE 240
Query: 241 TTPTETASRKTSDMVLKRKQTKDCPQRKWYPLRPKKINLDT 281
TTPTETASRKTSDMVLKRKQTKDCPQRKWYPLRPKKINLDT
Sbjct: 241 TTPTETASRKTSDMVLKRKQTKDCPQRKWYPLRPKKINLDT 281
>gi|110349761 NSL1, MIND kinetochore complex component isoform 2
[Homo sapiens]
Length = 213
Score = 338 bits (866), Expect = 4e-93
Identities = 166/166 (100%), Positives = 166/166 (100%)
Query: 1 MAGSPELVVLDPPWDKELAAGTESQALVSATPREDFRVRCTSKRAVTEMLQLCGRFVQKL 60
MAGSPELVVLDPPWDKELAAGTESQALVSATPREDFRVRCTSKRAVTEMLQLCGRFVQKL
Sbjct: 1 MAGSPELVVLDPPWDKELAAGTESQALVSATPREDFRVRCTSKRAVTEMLQLCGRFVQKL 60
Query: 61 GDALPEEIREPALRDAQWTFESAVQENISINGQAWQEASDNCFMDSDIKVLEDQFDEIIV 120
GDALPEEIREPALRDAQWTFESAVQENISINGQAWQEASDNCFMDSDIKVLEDQFDEIIV
Sbjct: 61 GDALPEEIREPALRDAQWTFESAVQENISINGQAWQEASDNCFMDSDIKVLEDQFDEIIV 120
Query: 121 DIATKRKQYPRKILECVIKTIKAKQEILKQYHPVVHPLDLKYDPDP 166
DIATKRKQYPRKILECVIKTIKAKQEILKQYHPVVHPLDLKYDPDP
Sbjct: 121 DIATKRKQYPRKILECVIKTIKAKQEILKQYHPVVHPLDLKYDPDP 166
>gi|95089461 discs large homolog 5 [Homo sapiens]
Length = 1919
Score = 35.4 bits (80), Expect = 0.056
Identities = 44/181 (24%), Positives = 81/181 (44%), Gaps = 13/181 (7%)
Query: 91 NGQAWQEASDNCFMDSDIKVLEDQFDEIIVDIATKRKQYPR-----KILECVIKTIKAKQ 145
NGQ +E + D+K L ++ + I D+ +++Q + +IL + T K
Sbjct: 251 NGQLLRERNLLQQSWEDMKRLHEEDQKEIGDLRAQQQQVLKHNGSSEILNKLYDTAMDKL 310
Query: 146 EILKQYHPVVHPLDLKYDPDPAPHMENLKCRGETVAKEISEAMKSLPALIEQGEGFSQVL 205
E++K+ + + +Y A H +L R E + +E +K L +Q + Q L
Sbjct: 311 EVVKKDYDALRK---RYSEKVAIHNADLS-RLEQLGEENQRLLKQTEMLTQQRDTAIQ-L 365
Query: 206 RMQPVIHLQR---IHQEVFSSCHRKPDAKPENFITQIETTPTETASRKTSDMVLKRKQTK 262
+ Q + L+R IH E+ + + D + E + Q E T T KT+ K ++ +
Sbjct: 366 QHQCALSLRRFEAIHHELNKATAQNKDLQWEMELLQSELTELRTTQVKTAKESEKYREER 425
Query: 263 D 263
D
Sbjct: 426 D 426
>gi|21040368 beta-site APP-cleaving enzyme 1 isoform D preproprotein
[Homo sapiens]
Length = 432
Score = 33.5 bits (75), Expect = 0.21
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 12/67 (17%)
Query: 77 QWTFESAVQENISINGQAWQEASDNCFMDSDIKVLEDQFDEIIVDIATKRKQYPRKILEC 136
+W +E + + INGQ D + E +D+ IVD T + P+K+ E
Sbjct: 188 EWYYEVIIVR-VEINGQ-----------DLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 235
Query: 137 VIKTIKA 143
+K+IKA
Sbjct: 236 AVKSIKA 242
>gi|21040366 beta-site APP-cleaving enzyme 1 isoform B preproprotein
[Homo sapiens]
Length = 476
Score = 33.5 bits (75), Expect = 0.21
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 12/67 (17%)
Query: 77 QWTFESAVQENISINGQAWQEASDNCFMDSDIKVLEDQFDEIIVDIATKRKQYPRKILEC 136
+W +E + + INGQ D + E +D+ IVD T + P+K+ E
Sbjct: 232 EWYYEVIIVR-VEINGQ-----------DLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 279
Query: 137 VIKTIKA 143
+K+IKA
Sbjct: 280 AVKSIKA 286
>gi|21040364 beta-site APP-cleaving enzyme 1 isoform C preproprotein
[Homo sapiens]
Length = 457
Score = 33.5 bits (75), Expect = 0.21
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 12/67 (17%)
Query: 77 QWTFESAVQENISINGQAWQEASDNCFMDSDIKVLEDQFDEIIVDIATKRKQYPRKILEC 136
+W +E + + INGQ D + E +D+ IVD T + P+K+ E
Sbjct: 213 EWYYEVIIVR-VEINGQ-----------DLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 260
Query: 137 VIKTIKA 143
+K+IKA
Sbjct: 261 AVKSIKA 267
>gi|6912266 beta-site APP-cleaving enzyme 1 isoform A preproprotein
[Homo sapiens]
Length = 501
Score = 33.5 bits (75), Expect = 0.21
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 12/67 (17%)
Query: 77 QWTFESAVQENISINGQAWQEASDNCFMDSDIKVLEDQFDEIIVDIATKRKQYPRKILEC 136
+W +E + + INGQ D + E +D+ IVD T + P+K+ E
Sbjct: 257 EWYYEVIIVR-VEINGQ-----------DLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 304
Query: 137 VIKTIKA 143
+K+IKA
Sbjct: 305 AVKSIKA 311
>gi|38524622 formin binding protein 1 [Homo sapiens]
Length = 617
Score = 32.0 bits (71), Expect = 0.62
Identities = 33/113 (29%), Positives = 46/113 (40%), Gaps = 13/113 (11%)
Query: 111 LEDQFDEIIVDIATKRKQYPRKILECVIKTIKAKQEILKQYHPVVHPLDLKYDPDPAPHM 170
L DQFD + K Q+ ILE IK +K + EI Y + L KY P
Sbjct: 7 LWDQFDNL-----EKHTQWGIDILEKYIKFVKERTEIELSYAKQLRNLSKKYQP-----K 56
Query: 171 ENLKCRGE---TVAKEISEAMKSLPALIEQGEGFSQVLRMQPVIHLQRIHQEV 220
+N K E T K + + Q E S+ + Q ++ L R QE+
Sbjct: 57 KNSKEEEEYKYTSCKAFISNLNEMNDYAGQHEVISENMASQIIVDLARYVQEL 109
>gi|11560152 zinc finger protein 335 [Homo sapiens]
Length = 1342
Score = 32.0 bits (71), Expect = 0.62
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 14/103 (13%)
Query: 130 PRKILECVIKTIKAKQEILKQYHPVVHPLDLKYDPDPAPHMENLKC----RGETVAKEIS 185
P K EC ++ K I H VH D K PDP P + + C R + K ++
Sbjct: 522 PYKCDECSYTSVYRKDVIR---HAAVHSRDRKKRPDPTPKLSSFPCPVCGRVYPMQKRLT 578
Query: 186 EAMKS----LPALIEQ-GEGFSQ--VLRMQPVIHLQRIHQEVF 221
+ MK+ P + ++ G+ F + +M + H+Q + F
Sbjct: 579 QHMKTHSTEKPHMCDKCGKSFKKRYTFKMHLLTHIQAVANRRF 621
>gi|223555917 metadherin [Homo sapiens]
Length = 582
Score = 31.2 bits (69), Expect = 1.1
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 75 DAQWTFESAVQENISINGQAWQEASDNCFMDSDIKVLEDQFDEIIVDIATKRKQYP 130
D+ S + EN+++NG W E S + S I E++++ + A KRK P
Sbjct: 266 DSTLQVSSGLNENLTVNGGGWNEKSVK--LSSQISAGEEKWNSVSPASAGKRKTEP 319
>gi|93102364 SWAP-70 protein [Homo sapiens]
Length = 585
Score = 30.8 bits (68), Expect = 1.4
Identities = 35/150 (23%), Positives = 62/150 (41%), Gaps = 34/150 (22%)
Query: 111 LEDQFDEIIVDIATKRKQYPRK-------ILECVIKTI-------KAKQEILKQYHPVVH 156
L+D+ +I++D + P K +++C KT K KQE ++ H +H
Sbjct: 247 LKDKKGDILLDENCCVESLPDKDGKKCLFLVKCFDKTFEISASDKKKKQEWIQAIHSTIH 306
Query: 157 PLDLKYDPDPAPHMENLKCRGETVAKEISE------AMKSLPALIEQGEGFSQVLRMQPV 210
L L P PH E + R E K+++E MK L A E +
Sbjct: 307 LLKL---GSPPPHKEARQRRKELRKKQLAEQEELERQMKELQAANESKQQ---------- 353
Query: 211 IHLQRIHQEVFSSCHRKPDAKPENFITQIE 240
L+ + +++ + R + + + TQ+E
Sbjct: 354 -ELEAVRKKLEEAASRAAEEEKKRLQTQVE 382
>gi|239745983 PREDICTED: similar to Rho-associated, coiled-coil
containing protein kinase 1 [Homo sapiens]
Length = 118
Score = 30.4 bits (67), Expect = 1.8
Identities = 16/63 (25%), Positives = 29/63 (46%)
Query: 130 PRKILECVIKTIKAKQEILKQYHPVVHPLDLKYDPDPAPHMENLKCRGETVAKEISEAMK 189
P LEC + +K ++ L + ++ P + YD A M L C + K ++ +K
Sbjct: 44 PPPALECQRRHVKCHRDHLDKKEDLICPCKVSYDVTSARDMLLLACSQDEQKKWVTHLVK 103
Query: 190 SLP 192
+P
Sbjct: 104 KIP 106
>gi|8922461 transmembrane protein 38B [Homo sapiens]
Length = 291
Score = 30.4 bits (67), Expect = 1.8
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 218 QEVFSSCHRKPDAK-PENFITQIETTPTETASRKTSDMVLKRKQTK 262
Q+ FSSC +K +AK P N + + + P + AS +K+K TK
Sbjct: 248 QQPFSSCEKKSEAKSPSNGVGSLASKPVDVASDN-----VKKKHTK 288
>gi|115647981 glutamine and serine rich 1 [Homo sapiens]
Length = 1735
Score = 30.4 bits (67), Expect = 1.8
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 218 QEVFSSCHRKPDAKPENFITQIETTPTETASRKTSDMVLKRKQTKDCPQRKWYPLRPK 275
+E C +KP KP I ++ P ++S KTSD + + T P K +PK
Sbjct: 1436 KEYVRVCSKKPRNKPSQTIRTVQAKP--SSSSKTSDPLASKTTTTKAPSVKPKVKQPK 1491
>gi|117968420 NUF2, NDC80 kinetochore complex component [Homo
sapiens]
Length = 464
Score = 30.0 bits (66), Expect = 2.4
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 108 IKVLEDQFDEIIVDIATKRKQYPRKILECVIKTIKAKQEILKQY 151
+K +++ IVD K K Y K+ + V K A+QE++++Y
Sbjct: 233 LKEIQESLKTKIVDSPEKLKNYKEKMKDTVQKLKNARQEVVEKY 276
>gi|117968353 NUF2, NDC80 kinetochore complex component [Homo
sapiens]
Length = 464
Score = 30.0 bits (66), Expect = 2.4
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 108 IKVLEDQFDEIIVDIATKRKQYPRKILECVIKTIKAKQEILKQY 151
+K +++ IVD K K Y K+ + V K A+QE++++Y
Sbjct: 233 LKEIQESLKTKIVDSPEKLKNYKEKMKDTVQKLKNARQEVVEKY 276
>gi|9256590 protocadherin alpha 5 isoform 1 precursor [Homo sapiens]
Length = 936
Score = 30.0 bits (66), Expect = 2.4
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 6/106 (5%)
Query: 68 IREPALRDAQWTFESAVQENISINGQAWQEASDNCFMDSDIKVLEDQ--FDEIIVDIATK 125
I E + D+++ E A +I N Q + N + D D+K E++ F E+++ +
Sbjct: 141 ILESRMPDSRFPLEGASDLDIGANAQLRYRLNPNEYFDLDVKTNEEETNFLELVLRKSLD 200
Query: 126 RKQYPRKILECVIKTIKAKQEILKQYHPVVHPLDLKYDPDPAPHME 171
R++ L VI T K E+ +++ LD D AP +
Sbjct: 201 REETQEHRL-LVIATDGGKPELTGTVQLLINVLDAN---DNAPEFD 242
>gi|14165416 protocadherin alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 816
Score = 30.0 bits (66), Expect = 2.4
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 6/106 (5%)
Query: 68 IREPALRDAQWTFESAVQENISINGQAWQEASDNCFMDSDIKVLEDQ--FDEIIVDIATK 125
I E + D+++ E A +I N Q + N + D D+K E++ F E+++ +
Sbjct: 141 ILESRMPDSRFPLEGASDLDIGANAQLRYRLNPNEYFDLDVKTNEEETNFLELVLRKSLD 200
Query: 126 RKQYPRKILECVIKTIKAKQEILKQYHPVVHPLDLKYDPDPAPHME 171
R++ L VI T K E+ +++ LD D AP +
Sbjct: 201 REETQEHRL-LVIATDGGKPELTGTVQLLINVLDAN---DNAPEFD 242
>gi|71834863 Rho GTPase activating protein 5 isoform a [Homo
sapiens]
Length = 1502
Score = 29.6 bits (65), Expect = 3.1
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Query: 92 GQAWQEASDNCFMDSDIKVLEDQFDEIIVDIATKRKQYPRKILECVIKTIKAKQEILKQY 151
GQ W+E CF V+ED+ + I + A ++ Y R E V K + QE+L ++
Sbjct: 447 GQPWEEVM--CF------VMEDEAYKYITE-ADSKEVYGRHQREIVEKAKEEFQEMLFEH 497
Query: 152 HPVVHPLDLKYDP 164
+ + LDL P
Sbjct: 498 SELFYDLDLNATP 510
>gi|71834861 Rho GTPase activating protein 5 isoform b [Homo
sapiens]
Length = 1501
Score = 29.6 bits (65), Expect = 3.1
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Query: 92 GQAWQEASDNCFMDSDIKVLEDQFDEIIVDIATKRKQYPRKILECVIKTIKAKQEILKQY 151
GQ W+E CF V+ED+ + I + A ++ Y R E V K + QE+L ++
Sbjct: 447 GQPWEEVM--CF------VMEDEAYKYITE-ADSKEVYGRHQREIVEKAKEEFQEMLFEH 497
Query: 152 HPVVHPLDLKYDP 164
+ + LDL P
Sbjct: 498 SELFYDLDLNATP 510
>gi|21264320 NLR family, pyrin domain containing 6 [Homo sapiens]
Length = 892
Score = 29.6 bits (65), Expect = 3.1
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 119 IVDIATKRKQYPRKILECVIKTIKAKQEILKQYHP-VVHPLDLKYDPDPAPHMENLK--- 174
+V K+K+ K L+ + + Q KQ ++HPL + DP H+ +L
Sbjct: 679 LVAAQEKKKKSLGKRLQASLGGGSSSQGTTKQLPASLLHPL-FQAMTDPLCHLSSLTLSH 737
Query: 175 CR-GETVAKEISEAMKSLPALIEQG 198
C+ + V +++SEA+++ PAL E G
Sbjct: 738 CKLPDAVCRDLSEALRAAPALTELG 762
>gi|28269672 serologically defined colon cancer antigen 8 [Homo
sapiens]
Length = 713
Score = 29.3 bits (64), Expect = 4.0
Identities = 23/116 (19%), Positives = 53/116 (45%), Gaps = 13/116 (11%)
Query: 94 AWQEASDNCFMDSDIKVLEDQFD-EIIVDIATKRKQYPRKILECVIKTIKAKQEILKQYH 152
AW E + ++ +L Q D E V + +RK P +++++ ++ + H
Sbjct: 64 AWPELQQSHAVNQLKDLLRQQADKESEVSPSRRRKMSP-------LRSLEHEETNMPTMH 116
Query: 153 PVVHPLDLKYDPDPAPHMENLKCRGETVAKEISEAMKSLPALIEQGEGFSQVLRMQ 208
+VH ++ D + ++ +L+ + +E+S + ++ + EG Q L+ Q
Sbjct: 117 DLVHTIN-----DQSQYIHHLEAEVKFCKEELSGMKNKIQVVVLENEGLQQQLKSQ 167
>gi|111118994 brain-specific angiogenesis inhibitor 1 precursor [Homo
sapiens]
Length = 1584
Score = 28.9 bits (63), Expect = 5.3
Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 22/88 (25%)
Query: 205 LRMQPVIHLQRIHQEVFSSCHRK-------------PDAKPENFITQIETTPTETASRKT 251
L + ++H ++ HQ++F +RK PD+KPE +T +++
Sbjct: 1480 LDFEKIMHTRKRHQDMFQDLNRKLQHAAEKDKEVLGPDSKPEK---------QQTPNKRP 1530
Query: 252 SDMVLKRKQTKDCPQRKWYPLRPKKINL 279
+ + K T +++ PL+P + L
Sbjct: 1531 WESLRKAHGTPTWVKKELEPLQPSPLEL 1558
>gi|115511012 coiled-coil domain containing 136 [Homo sapiens]
Length = 1154
Score = 28.5 bits (62), Expect = 6.9
Identities = 16/74 (21%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 135 ECVIKTIKAKQEILKQYHPVVHPLDLKYDPDPAPHMENLKCRGETVAKEISEAMKSLPAL 194
+CV+K E L+++ H ++ +PD + ++ KC +K + E M++L +
Sbjct: 633 DCVLKEQLEIHEELRRFKES-HFQEVLENPDDSKLAKSSKCNRNKQSKLLMEQMQALQVM 691
Query: 195 IEQGEGFSQVLRMQ 208
+ G+ ++L+ +
Sbjct: 692 YDAGQAKQELLQQE 705
>gi|4885583 Rho-associated, coiled-coil containing protein kinase 1
[Homo sapiens]
Length = 1354
Score = 28.1 bits (61), Expect = 9.0
Identities = 16/63 (25%), Positives = 28/63 (44%)
Query: 130 PRKILECVIKTIKAKQEILKQYHPVVHPLDLKYDPDPAPHMENLKCRGETVAKEISEAMK 189
P LEC +K ++ L + ++ P + YD A M L C + K ++ +K
Sbjct: 1255 PPPALECRRCHVKCHRDHLDKKEDLICPCKVSYDVTSARDMLLLACSQDEQKKWVTHLVK 1314
Query: 190 SLP 192
+P
Sbjct: 1315 KIP 1317
>gi|239752561 PREDICTED: similar to Rho-associated, coiled-coil
containing protein kinase 1 [Homo sapiens]
Length = 143
Score = 28.1 bits (61), Expect = 9.0
Identities = 16/63 (25%), Positives = 28/63 (44%)
Query: 130 PRKILECVIKTIKAKQEILKQYHPVVHPLDLKYDPDPAPHMENLKCRGETVAKEISEAMK 189
P LEC +K ++ L + ++ P + YD A M L C + K ++ +K
Sbjct: 44 PPPALECRRCHVKCHRDHLDKKEDLICPCKVSYDVTSARDMLLLACSQDEQKKWVTHLVK 103
Query: 190 SLP 192
+P
Sbjct: 104 KIP 106
>gi|4759182 syntaxin 1A (brain) [Homo sapiens]
Length = 288
Score = 28.1 bits (61), Expect = 9.0
Identities = 39/164 (23%), Positives = 63/164 (38%), Gaps = 16/164 (9%)
Query: 107 DIKVLEDQFDEIIVDIATKRKQYPRKILECV------IKTIKAKQEILKQYHPVVHPLDL 160
+++ +D D+ V + R ++ + E V I I E +K+ H +
Sbjct: 7 ELRTAKDSDDDDDVAVTVDRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASP- 65
Query: 161 KYDPDPAPHMENLKCRGETVAKEISEAMKSLPALIEQGEGF---SQVLRMQPVIH--LQR 215
D +E L + A ++ +KS+ IEQ EG S LR++ H L R
Sbjct: 66 NPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSR 125
Query: 216 IHQEVFSSCHRKPDAKPE----NFITQIETTPTETASRKTSDMV 255
EV S + E Q+E T T S + DM+
Sbjct: 126 KFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDML 169
>gi|110624781 myosin, heavy polypeptide 13, skeletal muscle [Homo
sapiens]
Length = 1938
Score = 28.1 bits (61), Expect = 9.0
Identities = 36/154 (23%), Positives = 63/154 (40%), Gaps = 13/154 (8%)
Query: 57 VQKLGDALPEEIREP--ALRDAQWTFESAVQENISINGQAWQEASDNCFMDSDIKVLEDQ 114
V++ L EE+ E AL + T + QE + + + S N + + K LE
Sbjct: 1678 VERRNGLLLEELEEMKVALEQTERTRRLSEQELLDASDRVQLLHSQNTSLINTKKKLE-- 1735
Query: 115 FDEIIVDIATKRKQYPRKILECVIKTIKAKQEILKQYHPVVHPLDLKYDPDPAPHMENLK 174
DIA + + I E KAK+ I + +LK + D + H+E +K
Sbjct: 1736 -----ADIAQCQAEVENSIQESRNAEEKAKKAITDA---AMMAEELKKEQDTSAHLERMK 1787
Query: 175 CRGETVAKEISEAMKSLPALIEQGEGFSQVLRMQ 208
E K++ + L +G G Q+ +++
Sbjct: 1788 KNLEQTVKDLQHRLDEAEQLALKG-GKKQIQKLE 1820
>gi|119964721 fer (fps/fes related) tyrosine kinase [Homo sapiens]
Length = 822
Score = 28.1 bits (61), Expect = 9.0
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 141 IKAKQEILKQYHPVVHPLDLKYDPDPAPHMENLKCRGETVAKEISEAMKSLPALIEQGE 199
IK KQ++ K Y V ++ + +E LKC + KE++ A + + +G+
Sbjct: 104 IKDKQQVKKSYIGVHQQIEAEMIKVTKTELEKLKCSYRQLIKEMNSAKEKYKEALAKGK 162
>gi|24308223 hypothetical protein LOC57577 [Homo sapiens]
Length = 936
Score = 28.1 bits (61), Expect = 9.0
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 114 QFDEIIVDIATKRKQYPRKILECVIKTIKAKQEILKQYHPVVHPLDLKY 162
Q I+ D K+ RK+ E +I+T K Q+ K+Y H L L +
Sbjct: 292 QSTHILPDEEKMVKERKRKLKEVLIQTFKENQQCQKRYFAAWHKLILDH 340
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.132 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,283,740
Number of Sequences: 37866
Number of extensions: 485872
Number of successful extensions: 1348
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1334
Number of HSP's gapped (non-prelim): 31
length of query: 281
length of database: 18,247,518
effective HSP length: 101
effective length of query: 180
effective length of database: 14,423,052
effective search space: 2596149360
effective search space used: 2596149360
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.