Guide to the Human Genome
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Name: SWAP70 Sequence: fasta or formatted (585aa) NCBI GI: 93102364
Description:

SWAP-70 protein

Referenced in:

Inositol Pathways

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         35           2
 C cysteine            1.2          7           2
 D aspartate           4.4         26           3
 E glutamate          14.5         85           3
 F phenylalanine       3.1         18           1
 G glycine             3.2         19           3
 H histidine           2.4         14           2
 I isoleucine          4.4         26           2
 K lysine             11.5         67           4
 L leucine            11.8         69           2
 M methionine          2.2         13           2
 N asparagine          3.8         22           1
 P proline             2.4         14           3
 Q glutamine           7.5         44           3
 R arginine            5.0         29           2
 S serine              4.8         28           2
 T threonine           3.6         21           2
 V valine              4.3         25           1
 W tryptophan          2.1         12           1
 Y tyrosine            1.9         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SWAP-70 protein 
DEF6                  0.425   differentially expressed in FDCP 6 homolog 
TCHH                  0.053   trichohyalin 
LOC283685             0.052   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC727832             0.048   golgi autoantigen, golgin subfamily a-like 
LOC645202             0.048   PREDICTED: hypothetical protein LOC645202 
INCENP                0.048   inner centromere protein antigens 135/155kDa isofor...
ZNF853                0.047   zinc finger protein 853 
LOC283767             0.047   golgi autoantigen, golgin subfamily a-like 
LOC283685             0.047   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC440243             0.047   PREDICTED: Putative golgin subfamily A member 6-lik...
LOC100133758          0.046   PREDICTED: hypothetical protein, partial 
PLEC1                 0.046   plectin 1 isoform 11 
PLEC1                 0.046   plectin 1 isoform 10 
PLEC1                 0.046   plectin 1 isoform 8 
PLEC1                 0.046   plectin 1 isoform 7 
PLEC1                 0.046   plectin 1 isoform 6 
PLEC1                 0.046   plectin 1 isoform 3 
PLEC1                 0.046   plectin 1 isoform 2 
PLEC1                 0.046   plectin 1 isoform 1 
INCENP                0.046   inner centromere protein antigens 135/155kDa isofor...
GIGYF2                0.046   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.046   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.046   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.046   GRB10 interacting GYF protein 2 isoform b 
LOC400352             0.045   PREDICTED: similar to Putative golgin subfamily A m...
LOC100132816          0.045   PREDICTED: similar to Putative golgin subfamily A m...
MYH9                  0.044   myosin, heavy polypeptide 9, non-muscle 
NUMA1                 0.042   nuclear mitotic apparatus protein 1 
LOC100133220          0.042   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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