Guide to the Human Genome
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Name: LOC727758 Sequence: fasta or formatted (118aa) NCBI GI: 239745983
Description:

PREDICTED: similar to Rho-associated, coiled-coil containing protein kinase 1

Not currently referenced in the text

Other entries for this name:
alt prot {143aa} PREDICTED: similar to Rho-associated, coiled-coil containing prot...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8          8           1
 C cysteine            5.9          7           1
 D aspartate           5.9          7           1
 E glutamate           5.9          7           1
 F phenylalanine       4.2          5           1
 G glycine             1.7          2           1
 H histidine           6.8          8           1
 I isoleucine          2.5          3           1
 K lysine             11.0         13           2
 L leucine             7.6          9           3
 M methionine          1.7          2           1
 N asparagine          3.4          4           1
 P proline            10.2         12           3
 Q glutamine           4.2          5           1
 R arginine            4.2          5           2
 S serine              4.2          5           1
 T threonine           3.4          4           1
 V valine              6.8          8           1
 W tryptophan          1.7          2           1
 Y tyrosine            1.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Rho-associated, coiled-coil c... 
ROCK1                 0.975   Rho-associated, coiled-coil containing protein kinase...
LOC727758             0.975   PREDICTED: similar to Rho-associated, coiled-coil c...
ROCK2                 0.665   Rho-associated, coiled-coil containing protein kinas...
PRKCD                 0.030   protein kinase C, delta 
PRKCD                 0.030   protein kinase C, delta 
MYO9B                 0.030   myosin IXB isoform 2 
MYO9B                 0.030   myosin IXB isoform 1 
MYO9A                 0.030   myosin IXA 
RASGRP1               0.030   RAS guanyl releasing protein 1 isoform b 
RASGRP1               0.030   RAS guanyl releasing protein 1 isoform a 
NSL1                  0.021   NSL1, MIND kinetochore complex component isoform 1 ...
PRKCH                 0.021   protein kinase C, eta 
ADRBK2                0.013   beta-adrenergic receptor kinase 2 
ARAF                  0.013   v-raf murine sarcoma 3611 viral oncogene homolog [Hom...
CR1                   0.013   complement receptor 1 isoform S precursor 
CR1                   0.013   complement receptor 1 isoform F precursor 
RASGRP4               0.013   RAS guanyl releasing protein 4 isoform a 
RASGRP4               0.013   RAS guanyl releasing protein 4 isoform g 
RASGRP4               0.013   RAS guanyl releasing protein 4 isoform f 
RASGRP4               0.013   RAS guanyl releasing protein 4 isoform e 
RASGRP4               0.013   RAS guanyl releasing protein 4 isoform d 
RASGRP4               0.013   RAS guanyl releasing protein 4 isoform c 
RASGRP4               0.013   RAS guanyl releasing protein 4 isoform b 
RASGRP3               0.013   RAS guanyl releasing protein 3 (calcium and DAG-reg...
RASGRP3               0.013   RAS guanyl releasing protein 3 (calcium and DAG-regu...
RASGRP3               0.013   RAS guanyl releasing protein 3 (calcium and DAG-regul...
PRKD2                 0.008   protein kinase D2 isoform B 
PRKD2                 0.008   protein kinase D2 isoform A 
PRKD2                 0.008   protein kinase D2 isoform A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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