Guide to the Human Genome
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Name: PCDHA5 Sequence: fasta or formatted (936aa) NCBI GI: 9256590
Description:

protocadherin alpha 5 isoform 1 precursor

Referenced in:

Cadherins and Related Proteins

Other entries for this name:
alt prot [816aa] protocadherin alpha 5 isoform 2 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         73           2
 C cysteine            1.1         10           1
 D aspartate           5.8         54           2
 E glutamate           6.9         65           3
 F phenylalanine       3.0         28           2
 G glycine             6.7         63           2
 H histidine           1.6         15           1
 I isoleucine          4.0         37           2
 K lysine              4.7         44           8
 L leucine            10.6         99           4
 M methionine          0.7          7           1
 N asparagine          4.9         46           2
 P proline             6.6         62           2
 Q glutamine           3.4         32           2
 R arginine            5.4         51           3
 S serine              9.1         85           2
 T threonine           4.9         46           2
 V valine              9.2         86           3
 W tryptophan          0.9          8           1
 Y tyrosine            2.7         25           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protocadherin alpha 5 isoform 1 precursor 
PCDHA5                0.828   protocadherin alpha 5 isoform 2 precursor 
PCDHA4                0.826   protocadherin alpha 4 isoform 1 precursor 
PCDHA8                0.825   protocadherin alpha 8 isoform 1 precursor 
PCDHA1                0.823   protocadherin alpha 1 isoform 1 precursor 
PCDHA6                0.817   protocadherin alpha 6 isoform 1 precursor 
PCDHA3                0.816   protocadherin alpha 3 isoform 1 precursor 
PCDHA7                0.814   protocadherin alpha 7 isoform 1 precursor 
PCDHA13               0.813   protocadherin alpha 13 isoform 1 precursor 
PCDHA2                0.808   protocadherin alpha 2 isoform 1 precursor 
PCDHA11               0.800   protocadherin alpha 11 isoform 1 precursor 
PCDHA9                0.799   protocadherin alpha 9 isoform 1 precursor 
PCDHA10               0.795   protocadherin alpha 10 isoform 1 precursor 
PCDHA12               0.787   protocadherin alpha 12 isoform 1 precursor 
PCDHA4                0.658   protocadherin alpha 4 isoform 2 precursor 
PCDHA8                0.658   protocadherin alpha 8 isoform 2 precursor 
PCDHA1                0.657   protocadherin alpha 1 isoform 2 precursor 
PCDHA3                0.651   protocadherin alpha 3 isoform 2 precursor 
PCDHA6                0.651   protocadherin alpha 6 isoform 2 precursor 
PCDHA13               0.647   protocadherin alpha 13 isoform 2 precursor 
PCDHA7                0.643   protocadherin alpha 7 isoform 2 precursor 
PCDHA2                0.641   protocadherin alpha 2 isoform 2 precursor 
PCDHA11               0.634   protocadherin alpha 11 isoform 2 precursor 
PCDHA9                0.633   protocadherin alpha 9 isoform 2 precursor 
PCDHA10               0.629   protocadherin alpha 10 isoform 2 precursor 
PCDHA12               0.620   protocadherin alpha 12 isoform 2 precursor 
PCDHA1                0.432   protocadherin alpha 1 isoform 3 precursor 
PCDHA6                0.418   protocadherin alpha 6 isoform 3 precursor 
PCDHA10               0.416   protocadherin alpha 10 isoform 3 precursor 
PCDHAC2               0.326   protocadherin alpha subfamily C, 2 isoform 1 precurso...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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