Guide to the Human Genome
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Name: SDCCAG8 Sequence: fasta or formatted (713aa) NCBI GI: 28269672
Description:

serologically defined colon cancer antigen 8

Referenced in:

Centrosome
Stomach, Small Intestine, and Colon

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         46           2
 C cysteine            2.0         14           2
 D aspartate           4.1         29           2
 E glutamate          13.7         98           2
 F phenylalanine       1.4         10           1
 G glycine             2.7         19           2
 H histidine           3.1         22           2
 I isoleucine          3.5         25           1
 K lysine              8.4         60           2
 L leucine            12.1         86           3
 M methionine          2.5         18           2
 N asparagine          3.5         25           1
 P proline             1.3          9           1
 Q glutamine          11.1         79           3
 R arginine            6.2         44           3
 S serine              7.3         52           2
 T threonine           5.5         39           2
 V valine              3.6         26           3
 W tryptophan          0.3          2           1
 Y tyrosine            1.4         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   serologically defined colon cancer antigen 8 
SCLT1                 0.060   sodium channel associated protein 1 
EEA1                  0.057   early endosome antigen 1, 162kD 
GOLGA4                0.054   golgi autoantigen, golgin subfamily a, 4 
MYH10                 0.053   myosin, heavy polypeptide 10, non-muscle 
MYH13                 0.053   myosin, heavy polypeptide 13, skeletal muscle [Homo...
PLEC1                 0.053   plectin 1 isoform 11 
PLEC1                 0.053   plectin 1 isoform 10 
PLEC1                 0.053   plectin 1 isoform 8 
PLEC1                 0.053   plectin 1 isoform 7 
PLEC1                 0.053   plectin 1 isoform 6 
PLEC1                 0.053   plectin 1 isoform 3 
PLEC1                 0.053   plectin 1 isoform 2 
PLEC1                 0.053   plectin 1 isoform 1 
CIT                   0.052   citron 
TCHH                  0.051   trichohyalin 
MYH7                  0.051   myosin, heavy chain 7, cardiac muscle, beta 
GOLGB1                0.051   golgi autoantigen, golgin subfamily b, macrogolgin ...
LOC283767             0.049   golgi autoantigen, golgin subfamily a-like 
ROCK1                 0.049   Rho-associated, coiled-coil containing protein kinase...
CGNL1                 0.049   cingulin-like 1 
CCDC88A               0.049   coiled-coil domain containing 88A isoform 1 
MYH1                  0.049   myosin, heavy chain 1, skeletal muscle, adult [Homo...
MYH9                  0.049   myosin, heavy polypeptide 9, non-muscle 
LOC440243             0.049   PREDICTED: Putative golgin subfamily A member 6-lik...
CEP250                0.049   centrosomal protein 2 
LOC727832             0.049   golgi autoantigen, golgin subfamily a-like 
CCDC88A               0.049   coiled-coil domain containing 88A isoform 2 
CCDC18                0.049   sarcoma antigen NY-SAR-41 
CLIP1                 0.049   restin isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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