Guide to the Human Genome
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Name: CCDC136 Sequence: fasta or formatted (1154aa) NCBI GI: 115511012
Description:

coiled-coil domain containing 136

Referenced in:

Coiled-Coil Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         55           2
 C cysteine            2.5         29           2
 D aspartate           4.4         51           2
 E glutamate          17.7        204          12
 F phenylalanine       1.0         12           1
 G glycine             2.8         32           2
 H histidine           1.8         21           2
 I isoleucine          1.5         17           1
 K lysine              7.9         91           2
 L leucine            13.7        158           3
 M methionine          3.1         36           1
 N asparagine          2.8         32           2
 P proline             2.3         26           2
 Q glutamine          10.7        123           3
 R arginine            4.5         52           2
 S serine              8.8        101           3
 T threonine           3.9         45           2
 V valine              3.4         39           2
 W tryptophan          0.3          4           2
 Y tyrosine            2.3         26           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   coiled-coil domain containing 136 
MYH10                 0.055   myosin, heavy polypeptide 10, non-muscle 
GOLGB1                0.054   golgi autoantigen, golgin subfamily b, macrogolgin ...
TCHH                  0.054   trichohyalin 
MYH11                 0.054   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.054   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.054   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.054   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
MYH9                  0.053   myosin, heavy polypeptide 9, non-muscle 
CENPE                 0.053   centromere protein E 
CEP250                0.052   centrosomal protein 2 
SLMAP                 0.049   sarcolemma associated protein 
PLEC1                 0.048   plectin 1 isoform 11 
PLEC1                 0.048   plectin 1 isoform 10 
PLEC1                 0.048   plectin 1 isoform 8 
PLEC1                 0.048   plectin 1 isoform 7 
PLEC1                 0.048   plectin 1 isoform 6 
PLEC1                 0.048   plectin 1 isoform 3 
PLEC1                 0.048   plectin 1 isoform 2 
PLEC1                 0.048   plectin 1 isoform 1 
NUMA1                 0.047   nuclear mitotic apparatus protein 1 
EEA1                  0.046   early endosome antigen 1, 162kD 
WDR87                 0.046   NYD-SP11 protein 
GCC2                  0.045   GRIP and coiled-coil domain-containing 2 
CCDC88A               0.045   coiled-coil domain containing 88A isoform 1 
GOLGA4                0.044   golgi autoantigen, golgin subfamily a, 4 
CENPF                 0.044   centromere protein F 
MYH8                  0.044   myosin, heavy chain 8, skeletal muscle, perinatal [...
CCDC88A               0.044   coiled-coil domain containing 88A isoform 2 
GOLGA3                0.044   Golgi autoantigen, golgin subfamily a, 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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