Guide to the Human Genome
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Name: TMEM38B Sequence: fasta or formatted (291aa) NCBI GI: 8922461
Description:

transmembrane protein 38B

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         24           3
 C cysteine            1.4          4           1
 D aspartate           3.1          9           1
 E glutamate           3.4         10           1
 F phenylalanine       6.2         18           2
 G glycine             6.5         19           3
 H histidine           3.1          9           1
 I isoleucine          5.8         17           2
 K lysine              7.2         21           3
 L leucine             9.3         27           3
 M methionine          4.1         12           2
 N asparagine          3.4         10           1
 P proline             4.8         14           2
 Q glutamine           2.7          8           2
 R arginine            1.7          5           1
 S serine              8.9         26           2
 T threonine           7.6         22           2
 V valine              5.8         17           1
 W tryptophan          3.8         11           1
 Y tyrosine            2.7          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane protein 38B 
TMEM38A               0.381   transmembrane protein 38A 
NSL1                  0.009   NSL1, MIND kinetochore complex component isoform 1 ...
LOC100292979          0.007   PREDICTED: hypothetical protein 
LOC100290530          0.007   PREDICTED: hypothetical protein XP_002347830 
IGSF10                0.007   immunoglobulin superfamily, member 10 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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