Guide to the Human Genome
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Name: LOC727758 Sequence: fasta or formatted (143aa) NCBI GI: 239752561
Description:

PREDICTED: similar to Rho-associated, coiled-coil containing protein kinase 1

Not currently referenced in the text

Other entries for this name:
alt prot {118aa} PREDICTED: similar to Rho-associated, coiled-coil containing prot...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3          9           1
 C cysteine            5.6          8           1
 D aspartate           4.9          7           1
 E glutamate           4.2          6           1
 F phenylalanine       4.2          6           1
 G glycine             2.1          3           1
 H histidine           5.6          8           1
 I isoleucine          2.1          3           1
 K lysine             11.2         16           2
 L leucine             7.0         10           3
 M methionine          1.4          2           1
 N asparagine          4.2          6           1
 P proline             8.4         12           3
 Q glutamine           4.2          6           2
 R arginine            5.6          8           2
 S serine              7.0         10           1
 T threonine           6.3          9           1
 V valine              7.0         10           2
 W tryptophan          1.4          2           1
 Y tyrosine            1.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Rho-associated, coiled-coil c... 
ROCK1                 1.000   Rho-associated, coiled-coil containing protein kinase...
LOC727758             0.810   PREDICTED: similar to Rho-associated, coiled-coil c...
ROCK2                 0.606   Rho-associated, coiled-coil containing protein kinas...
PRKCD                 0.046   protein kinase C, delta 
PRKCD                 0.046   protein kinase C, delta 
MYO9B                 0.042   myosin IXB isoform 2 
MYO9B                 0.042   myosin IXB isoform 1 
MYO9A                 0.042   myosin IXA 
RASGRP1               0.042   RAS guanyl releasing protein 1 isoform b 
RASGRP1               0.042   RAS guanyl releasing protein 1 isoform a 
PRKCQ                 0.039   protein kinase C, theta 
RASGRP4               0.032   RAS guanyl releasing protein 4 isoform a 
RASGRP4               0.032   RAS guanyl releasing protein 4 isoform g 
RASGRP4               0.032   RAS guanyl releasing protein 4 isoform f 
RASGRP4               0.032   RAS guanyl releasing protein 4 isoform e 
RASGRP4               0.032   RAS guanyl releasing protein 4 isoform d 
RASGRP4               0.032   RAS guanyl releasing protein 4 isoform c 
RASGRP4               0.032   RAS guanyl releasing protein 4 isoform b 
PRKCH                 0.028   protein kinase C, eta 
PRKCE                 0.028   protein kinase C, epsilon 
RASGRP3               0.028   RAS guanyl releasing protein 3 (calcium and DAG-reg...
RASGRP3               0.028   RAS guanyl releasing protein 3 (calcium and DAG-regu...
RASGRP3               0.028   RAS guanyl releasing protein 3 (calcium and DAG-regul...
PRKD2                 0.025   protein kinase D2 isoform B 
PRKD2                 0.025   protein kinase D2 isoform A 
PRKD2                 0.025   protein kinase D2 isoform A 
PRKD2                 0.025   protein kinase D2 isoform A 
ARAF                  0.021   v-raf murine sarcoma 3611 viral oncogene homolog [Hom...
PRKD1                 0.021   protein kinase D1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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