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Search of human proteins with 156119601
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|156119601 spermatogenesis and oogenesis specific basic
helix-loop-helix 1 isoform b [Homo sapiens]
(328 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|156119601 spermatogenesis and oogenesis specific basic helix-... 672 0.0
gi|156119603 spermatogenesis and oogenesis specific basic helix-... 644 0.0
gi|239047343 spermatogenesis and oogenesis specific basic helix-... 48 1e-05
gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens] 40 0.002
gi|62739157 linker for activation of T cells isoform c [Homo sap... 39 0.008
gi|4507447 transcription factor AP-4 (activating enhancer bindin... 38 0.011
gi|7657293 linker for activation of T cells isoform a [Homo sapi... 37 0.031
gi|41281612 zinc finger protein 828 [Homo sapiens] 35 0.070
gi|110832843 TBP-associated factor 4 [Homo sapiens] 35 0.091
gi|38505159 transcription factor-like 5 protein [Homo sapiens] 35 0.091
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 35 0.12
gi|83367077 mucin 16 [Homo sapiens] 35 0.12
gi|239745807 PREDICTED: keratin associated protein 4-9 [Homo sap... 35 0.12
gi|19924099 synapsin I isoform Ia [Homo sapiens] 35 0.12
gi|19924097 synapsin I isoform Ib [Homo sapiens] 35 0.12
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 35 0.12
gi|239049118 linker for activation of T cells isoform d [Homo sa... 34 0.16
gi|62739155 linker for activation of T cells isoform b [Homo sap... 34 0.16
gi|169213963 PREDICTED: hypothetical protein LOC147710 [Homo sap... 34 0.20
gi|169214369 PREDICTED: hypothetical protein LOC147710 [Homo sap... 34 0.20
gi|169213385 PREDICTED: hypothetical protein LOC147710 [Homo sap... 34 0.20
gi|48255931 hepatoma-derived growth factor-related protein 2 iso... 34 0.20
gi|14249158 hepatoma-derived growth factor-related protein 2 iso... 34 0.20
gi|27436925 synoviolin 1 isoform a [Homo sapiens] 33 0.27
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 33 0.27
gi|169211815 PREDICTED: keratin associated protein 4.6 [Homo sap... 33 0.27
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 33 0.27
gi|23199971 T-cell activation Rho GTPase-activating protein isof... 33 0.27
gi|21314774 T-cell activation Rho GTPase-activating protein isof... 33 0.27
gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens] 33 0.27
>gi|156119601 spermatogenesis and oogenesis specific basic
helix-loop-helix 1 isoform b [Homo sapiens]
Length = 328
Score = 672 bits (1734), Expect = 0.0
Identities = 328/328 (100%), Positives = 328/328 (100%)
Query: 1 MASRCSEPYPEVSRIPTVRGCNGSLSGALSCCEDSAQGSGPPKAPTVAEGPSSCLRRNVI 60
MASRCSEPYPEVSRIPTVRGCNGSLSGALSCCEDSAQGSGPPKAPTVAEGPSSCLRRNVI
Sbjct: 1 MASRCSEPYPEVSRIPTVRGCNGSLSGALSCCEDSAQGSGPPKAPTVAEGPSSCLRRNVI 60
Query: 61 SERERRKRMSLSCERLRALLPQFDGRREDMASVLEMSVQFLRLASALGPSQEQHAILASS 120
SERERRKRMSLSCERLRALLPQFDGRREDMASVLEMSVQFLRLASALGPSQEQHAILASS
Sbjct: 61 SERERRKRMSLSCERLRALLPQFDGRREDMASVLEMSVQFLRLASALGPSQEQHAILASS 120
Query: 121 KEMWHSLQEDVLQLTLSSQIQAGVPDPGTGASSGTRTPDVKAFLESPWSLDPASASPEPV 180
KEMWHSLQEDVLQLTLSSQIQAGVPDPGTGASSGTRTPDVKAFLESPWSLDPASASPEPV
Sbjct: 121 KEMWHSLQEDVLQLTLSSQIQAGVPDPGTGASSGTRTPDVKAFLESPWSLDPASASPEPV 180
Query: 181 PHILASSRQWDPASCTSLGTDKCEALLGLCQVRGGLPPFSEPSSLVPWPPGRSLPKAVRP 240
PHILASSRQWDPASCTSLGTDKCEALLGLCQVRGGLPPFSEPSSLVPWPPGRSLPKAVRP
Sbjct: 181 PHILASSRQWDPASCTSLGTDKCEALLGLCQVRGGLPPFSEPSSLVPWPPGRSLPKAVRP 240
Query: 241 PLSWPPFSQQQTLPVMSGEALGWLGQAGPLAMGAAPLGEPAKEDPMLAQEAGSALGSDVD 300
PLSWPPFSQQQTLPVMSGEALGWLGQAGPLAMGAAPLGEPAKEDPMLAQEAGSALGSDVD
Sbjct: 241 PLSWPPFSQQQTLPVMSGEALGWLGQAGPLAMGAAPLGEPAKEDPMLAQEAGSALGSDVD 300
Query: 301 DGTSFLLTAGPSSWPGEWGPGFRAGPPA 328
DGTSFLLTAGPSSWPGEWGPGFRAGPPA
Sbjct: 301 DGTSFLLTAGPSSWPGEWGPGFRAGPPA 328
>gi|156119603 spermatogenesis and oogenesis specific basic
helix-loop-helix 1 isoform a [Homo sapiens]
Length = 387
Score = 644 bits (1661), Expect = 0.0
Identities = 318/326 (97%), Positives = 319/326 (97%)
Query: 1 MASRCSEPYPEVSRIPTVRGCNGSLSGALSCCEDSAQGSGPPKAPTVAEGPSSCLRRNVI 60
MASRCSEPYPEVSRIPTVRGCNGSLSGALSCCEDSAQGSGPPKAPTVAEGPSSCLRRNVI
Sbjct: 1 MASRCSEPYPEVSRIPTVRGCNGSLSGALSCCEDSAQGSGPPKAPTVAEGPSSCLRRNVI 60
Query: 61 SERERRKRMSLSCERLRALLPQFDGRREDMASVLEMSVQFLRLASALGPSQEQHAILASS 120
SERERRKRMSLSCERLRALLPQFDGRREDMASVLEMSVQFLRLASALGPSQEQHAILASS
Sbjct: 61 SERERRKRMSLSCERLRALLPQFDGRREDMASVLEMSVQFLRLASALGPSQEQHAILASS 120
Query: 121 KEMWHSLQEDVLQLTLSSQIQAGVPDPGTGASSGTRTPDVKAFLESPWSLDPASASPEPV 180
KEMWHSLQEDVLQLTLSSQIQAGVPDPGTGASSGTRTPDVKAFLESPWSLDPASASPEPV
Sbjct: 121 KEMWHSLQEDVLQLTLSSQIQAGVPDPGTGASSGTRTPDVKAFLESPWSLDPASASPEPV 180
Query: 181 PHILASSRQWDPASCTSLGTDKCEALLGLCQVRGGLPPFSEPSSLVPWPPGRSLPKAVRP 240
PHILASSRQWDPASCTSLGTDKCEALLGLCQVRGGLPPFSEPSSLVPWPPGRSLPKAVRP
Sbjct: 181 PHILASSRQWDPASCTSLGTDKCEALLGLCQVRGGLPPFSEPSSLVPWPPGRSLPKAVRP 240
Query: 241 PLSWPPFSQQQTLPVMSGEALGWLGQAGPLAMGAAPLGEPAKEDPMLAQEAGSALGSDVD 300
PLSWPPFSQQQTLPVMSGEALGWLGQAGPLAMGAAPLGEPAKEDPMLAQEAGSALGSDVD
Sbjct: 241 PLSWPPFSQQQTLPVMSGEALGWLGQAGPLAMGAAPLGEPAKEDPMLAQEAGSALGSDVD 300
Query: 301 DGTSFLLTAGPSSWPGEWGPGFRAGP 326
DGTSFLLTAGPSSWPG +GP
Sbjct: 301 DGTSFLLTAGPSSWPGSLEGRGGSGP 326
>gi|239047343 spermatogenesis and oogenesis specific basic
helix-loop-helix 2 [Homo sapiens]
Length = 425
Score = 48.1 bits (113), Expect = 1e-05
Identities = 48/193 (24%), Positives = 83/193 (43%), Gaps = 22/193 (11%)
Query: 10 PEVSRIPTVRGCNGSL----SGALSCCEDSAQGSGPPKAPTVAEGPSSCLRRNVISERE- 64
PE +P R + L + +C E G+G +++E + + S +E
Sbjct: 152 PEELGLPLQRSYSEHLGYFPTDLFACSESLRNGNGLELNASLSEFEKNKKISLLHSSKEK 211
Query: 65 -RRKRMSLSCERLRALLPQFDGRREDMASVLEMSVQFLR-LASALGPS-QEQHAILASSK 121
RR+R+ CE+LR LLP GR+ D ASVLE +V +++ + + P+ Q S
Sbjct: 212 LRRERIKYCCEQLRTLLPYVKGRKNDAASVLEATVDYVKYIREKISPAVMAQITEALQSN 271
Query: 122 EMWHSLQEDVLQLTLSSQIQA-------GVPDPGTGAS-------SGTRTPDVKAFLESP 167
+ Q+ ++L+L + A P G +G TPD ++ L+
Sbjct: 272 MRFCKKQQTPIELSLPGTVMAQRENSVMSTYSPERGLQFLTNTCWNGCSTPDAESSLDEA 331
Query: 168 WSLDPASASPEPV 180
+ +SAS +
Sbjct: 332 VRVPSSSASENAI 344
>gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]
Length = 1388
Score = 40.4 bits (93), Expect = 0.002
Identities = 62/273 (22%), Positives = 87/273 (31%), Gaps = 89/273 (32%)
Query: 94 LEMSVQFLRLASALGPSQEQHAILASSKEMWHSLQEDVLQLTLSSQIQAGVPDPGTGASS 153
L MS Q L + +GPS E A++ +V T + +GVP G +
Sbjct: 438 LSMSAQSLGEEATVGPSSEDSLTTAAAAT-------EVSLSTFEDEEASGVPTDGLAPLT 490
Query: 154 GTRTPDVKAFLESPWSLDPASASPEPVPHILASSRQWDPASCTSLGTDKCEALLGLCQVR 213
T P+ +A P + +A+ P I A +
Sbjct: 491 ATMAPE-RAVTSGPGDEEDLAAATTEEPLITAGGEE------------------------ 525
Query: 214 GGLPPFSEPSSLVPWPPGRSLPKAVRPPLSWPPFSQQQTLPVMSGEALGWLGQAGPLA-- 271
G PP P G PPL P + ++ + E +G GQAGP
Sbjct: 526 SGSPP----------PDG--------PPLPLPTVAPERWITPAQREHVGMKGQAGPKGEK 567
Query: 272 --MGAAPLGEPAKEDPM------LAQEAGSALGSDVDDGTSFLLTA-------------- 309
G G P P+ A+ +G GSDV G+ L+ +
Sbjct: 568 GDAGEELPGPPEPSGPVGPTAGAEAEGSGLGWGSDVGSGSGDLVGSEQLLRGPPGPPGPP 627
Query: 310 ---------------GPSSWPGEWGPGFRAGPP 327
GP PGE GP GPP
Sbjct: 628 GLPGIPGKPGTDVFMGPPGSPGEDGPAGEPGPP 660
>gi|62739157 linker for activation of T cells isoform c [Homo
sapiens]
Length = 232
Score = 38.5 bits (88), Expect = 0.008
Identities = 36/115 (31%), Positives = 48/115 (41%), Gaps = 17/115 (14%)
Query: 219 FSEPSSLVPWPPGRSLPKAVRPPLSWPPFSQQQTLPVMSGEALGWLGQA--------GPL 270
F P ++ PWPP A P S+PP SQ LP+ S + LG + G
Sbjct: 51 FKRPHTVAPWPP------AYPPVTSYPPLSQPDLLPIPSPQPLGGSHRTPSSRRDSDGAN 104
Query: 271 AMGAAPLGEPAKEDPMLAQEAGSALGSDV--DDGTSFLLTAGPSSWPGEWGPGFR 323
++ + EPA ED ++ G V D T TA PS+ P PG R
Sbjct: 105 SVASYENEEPACEDADEDEDDYHNPGYLVVLPDSTPATSTAAPSA-PALSTPGIR 158
>gi|4507447 transcription factor AP-4 (activating enhancer binding
protein 4) [Homo sapiens]
Length = 338
Score = 38.1 bits (87), Expect = 0.011
Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 11/123 (8%)
Query: 42 PKAPTVAEGPSSCLRRNVISERERRKRMSLSC--ERLRALLPQFDGRREDMASVLEMSVQ 99
P P +RR + + ERR+ S++ + L+ L+P DG + A++L+ + +
Sbjct: 35 PLTPETQRDQERRIRREIANSNERRRMQSINAGFQSLKTLIPHTDGEKLSKAAILQQTAE 94
Query: 100 FLRLASALGPSQEQHAILASSKEMWHSLQEDVLQLTLSSQIQAGVPDPGTGASSGTRTPD 159
++ QE+ +L + ++ +QE L+ SS + D G S D
Sbjct: 95 YI-----FSLEQEKTRLLQQNTQLKRFIQE----LSGSSPKRRRAEDKDEGIGSPDIWED 145
Query: 160 VKA 162
KA
Sbjct: 146 EKA 148
>gi|7657293 linker for activation of T cells isoform a [Homo
sapiens]
Length = 262
Score = 36.6 bits (83), Expect = 0.031
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 22/104 (21%)
Query: 219 FSEPSSLVPWPPGRSLPKAVRPPLSWPPFSQQQTLPVMSGEALGWLGQAGPLAMGAAPLG 278
F P ++ PWPP A P S+PP SQ LP+ P +G +
Sbjct: 51 FKRPHTVAPWPP------AYPPVTSYPPLSQPDLLPI----------PRSPQPLGGSHRT 94
Query: 279 EPAKEDPMLAQEAGSALGSDVDDGTSFLLTAGPSSWPGEWGPGF 322
++ D + +++ S ++G S + A + W G WGP +
Sbjct: 95 PSSRRD----SDGANSVASYENEGASGIRGA-QAGW-GVWGPSW 132
>gi|41281612 zinc finger protein 828 [Homo sapiens]
Length = 812
Score = 35.4 bits (80), Expect = 0.070
Identities = 56/212 (26%), Positives = 77/212 (36%), Gaps = 34/212 (16%)
Query: 138 SQIQAGVPDPGTGASSGTRTPDVKAFLESPW---------SLDPASASPEPVPHILASSR 188
SQ A VP P + VKA L +P +L P SAS P + AS
Sbjct: 196 SQKLAPVPSPEPQKPAPVSPESVKATLSNPKPQKQSHFPETLGPPSASSPESPVLAASPE 255
Query: 189 QWDPASCTSLGTDKCEALLGLCQVRGGLPPFSEPS---SLVPWPPGRSL-PKAVRP---- 240
W P+ S + K R P +PS S PW P ++ P+ RP
Sbjct: 256 PWGPSPAASPESRK--------SARTTSPEPRKPSPSESPEPWKPFPAVSPEPRRPAPAV 307
Query: 241 -PLSWPPFSQQQTLPVMSGEALGWLGQAGPLAMG-AAPLGEPAKEDPMLAQEAGSALGSD 298
P SW P P S + +GP AP P P+ + G +
Sbjct: 308 SPGSWKPGPPGSPRPWKSNPS----ASSGPWKPAKPAPSVSPGPWKPIPSVSPGPWKPTP 363
Query: 299 VDDGTSFLLTA-GPSSW--PGEWGPGFRAGPP 327
S+ ++ PSSW P +++GPP
Sbjct: 364 SVSSASWKSSSVSPSSWKSPPASPESWKSGPP 395
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 35.0 bits (79), Expect = 0.091
Identities = 37/118 (31%), Positives = 43/118 (36%), Gaps = 25/118 (21%)
Query: 217 PPF----SEPSSLVPWPPGRSLPKA--VRPPLSWPPFSQQQTLPVMSGEALGWLGQAGPL 270
PPF + P+ P PP P A PP PP TL G AGP
Sbjct: 241 PPFVGAAAPPAPAAPSPPAAPAPAAPAAAPP---PPPPAPATLARPPGHP------AGP- 290
Query: 271 AMGAAPLGEPAKEDPMLAQEAGSALGSDVDDGTSFLLTAGPSSWPGEWGPGFRAGPPA 328
P PA P AQ GSA + + GP+ G+ GPG A PA
Sbjct: 291 -----PTAAPAVPPPAAAQNGGSAGAAPAPAPAA----GGPAGVSGQPGPGAAAAAPA 339
Score = 29.3 bits (64), Expect = 5.0
Identities = 31/109 (28%), Positives = 38/109 (34%), Gaps = 15/109 (13%)
Query: 217 PPFSEPSSLVPWPPGRSLPKAVRPPLSWPPFSQQQ---------TLPVMSGEALGWLGQA 267
PP P++L PPG P PP + Q P G A G GQ
Sbjct: 272 PPPPAPATLAR-PPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPA-GVSGQP 329
Query: 268 GPLAMGAAPLGEPAKEDP----MLAQEAGSALGSDVDDGTSFLLTAGPS 312
GP A AAP E P A A L + T+ + GP+
Sbjct: 330 GPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPASTAASMVIGPT 378
>gi|38505159 transcription factor-like 5 protein [Homo sapiens]
Length = 500
Score = 35.0 bits (79), Expect = 0.091
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 27 GALSCCEDSAQGSGPPKAPTVAEGPSSCLRRNVISERERRKRMSLSCERLRALLPQFDGR 86
GA E S G G S R+ ER+RR+R+ + C+ L L+P F
Sbjct: 374 GAWQSSESSQANLGEQAQSGPQGGRSQRRERHNRMERDRRRRIRICCDELNLLVP-FCNA 432
Query: 87 REDMASVLEMSVQFLR 102
D A+ L+ + FL+
Sbjct: 433 ETDKATTLQWTTAFLK 448
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 34.7 bits (78), Expect = 0.12
Identities = 39/121 (32%), Positives = 46/121 (38%), Gaps = 11/121 (9%)
Query: 208 GLCQVRGGLPPFSEPSSL-VPWPPGRSLPKAVRPPLSWPPFSQQQTLPVMSGEALGWLGQ 266
G+ RG L P P PG+ P PL P S P M GEA G G
Sbjct: 339 GMPGERGRLGPQGAPGQRGAHGMPGKPGPMG---PLGIPGSSGFPGNPGMKGEA-GPTGA 394
Query: 267 AGPLAMGAAPLGEPAKEDPMLAQEAGSALGSDVDDGTSFLLTAGPSSWPGEWGPGFRAGP 326
GP GE P+ + A+G+D G GP+ PG GP AGP
Sbjct: 395 RGPEGP-QGQRGETGPPGPVGSPGLPGAIGTDGTPGAK-----GPTGSPGTSGPPGSAGP 448
Query: 327 P 327
P
Sbjct: 449 P 449
Score = 30.4 bits (67), Expect = 2.3
Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
Query: 262 GWLGQAGPLAMG--AAPLGEPAKEDPMLAQEAGSALGSDVDDGTSFLLTAGPSSWPGEWG 319
G +G GP A PLGEP KE P + + G D G AGP PG+ G
Sbjct: 915 GRVGPPGPAGAPGPAGPLGEPGKEGPPGLRGDPGSHGRVGDRG-----PAGPPGGPGDKG 969
Query: 320 PGFRAGPP 327
G P
Sbjct: 970 DPGEDGQP 977
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 34.7 bits (78), Expect = 0.12
Identities = 25/67 (37%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 153 SGTRTPDVKAFLESPWSLD-PASASPEPVPHILASSRQWDPASCTSLGTDKCEALLGLCQ 211
SGT P V+ S L PA SP PVP L SR P TSL T +
Sbjct: 6498 SGTSPPSVEKTSSSSSLLSLPAITSPSPVPTTLPESRPSSPVHLTSLPTSGLVKTTDMLA 6557
Query: 212 VRGGLPP 218
LPP
Sbjct: 6558 SVASLPP 6564
>gi|239745807 PREDICTED: keratin associated protein 4-9 [Homo
sapiens]
Length = 254
Score = 34.7 bits (78), Expect = 0.12
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 13/78 (16%)
Query: 217 PPFSEPSSLVPWPPGRSL------------PKAVRPPLSWPPFSQQQTL-PVMSGEALGW 263
PP + P+ + P G S P AVRPP++ PP + + P +G +
Sbjct: 31 PPAAAPAVVYPAAAGPSAASLCAANPLVPAPAAVRPPVAGPPATAPAVVCPAAAGPSAAS 90
Query: 264 LGQAGPLAMGAAPLGEPA 281
L A PLA+ A + PA
Sbjct: 91 LRAANPLAVAPAAVRRPA 108
Score = 29.3 bits (64), Expect = 5.0
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 235 PKAVRPPLSWPPFSQQQTL-PVMSGEALGWLGQAGPLAMGAAPLGEPAKEDPMLA 288
P AVRPP + PP + + P +G + L A PL A + P P A
Sbjct: 21 PAAVRPPAAGPPAAAPAVVYPAAAGPSAASLCAANPLVPAPAAVRPPVAGPPATA 75
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 34.7 bits (78), Expect = 0.12
Identities = 30/101 (29%), Positives = 36/101 (35%), Gaps = 19/101 (18%)
Query: 227 PWPPGRSLPKAVRPPLSWPPFSQQQTLPVMSGEALGWLGQAGPLAMGAAPLGEPAKEDPM 286
P G P A RPP S P Q+Q P + G A P A GA P G+ + P
Sbjct: 535 PVAGGPGAPPAARPPAS--PSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQ 592
Query: 287 LAQEAGSALGSDVDDGTSFLLTAGPSSWPGEWGPGFRAGPP 327
AGP+ + GP R GPP
Sbjct: 593 KPPGP-----------------AGPTRQASQAGPVPRTGPP 616
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 34.7 bits (78), Expect = 0.12
Identities = 30/101 (29%), Positives = 36/101 (35%), Gaps = 19/101 (18%)
Query: 227 PWPPGRSLPKAVRPPLSWPPFSQQQTLPVMSGEALGWLGQAGPLAMGAAPLGEPAKEDPM 286
P G P A RPP S P Q+Q P + G A P A GA P G+ + P
Sbjct: 535 PVAGGPGAPPAARPPAS--PSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQ 592
Query: 287 LAQEAGSALGSDVDDGTSFLLTAGPSSWPGEWGPGFRAGPP 327
AGP+ + GP R GPP
Sbjct: 593 KPPGP-----------------AGPTRQASQAGPVPRTGPP 616
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 34.7 bits (78), Expect = 0.12
Identities = 53/216 (24%), Positives = 80/216 (37%), Gaps = 11/216 (5%)
Query: 37 QGSGPPKAPTVAEGP--SSCLRRNVISERERRKRMS-LSCERLRALLPQFDGRREDMASV 93
Q + PP+A T P +S + V+ + + L+ + L+ LPQ ++ A
Sbjct: 654 QAAAPPQATTPQPSPGLASSPEKIVLGQPPSATPTAILTQDSLQMFLPQERSQQPLSAEG 713
Query: 94 LEMSVQFLRLASALGPSQEQHAILASSKEMWHSLQEDVLQLTLSS--QIQAGVPDPGTGA 151
+SV + SA P+Q+ +K Q Q + + QI A P G G
Sbjct: 714 PHLSVPASVIVSAPPPAQDPAPATPVAKGAGLGPQAPDSQASPAPAPQIPAAAPLKGPGP 773
Query: 152 SSGTRTPDVKAFLESPWSLDPASASPEPVPHILASSRQWDPASCTSLGTDKCEA---LLG 208
SS P +SP P P P S P+ +A L G
Sbjct: 774 SSSPSLPHQAPLGDSPHLPSPHPTRPPSRPPSRPQSVSRPPSEPPLHPCPPPQAPPTLPG 833
Query: 209 LCQVRGGL---PPFSEPSSLVPWPPGRSLPKAVRPP 241
+ ++ L PP S P+ P PP L +PP
Sbjct: 834 IFVIQNQLGVPPPASNPAPTAPGPPQPPLRPQSQPP 869
Score = 28.9 bits (63), Expect = 6.6
Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 10/107 (9%)
Query: 145 PDPGTGASSGTRTPDVKAFLESPWSLDPASASPEPVPHILASSRQWDPASCTSLG---TD 201
P+P A+ GT PD E+P L PA P + +S D +L
Sbjct: 1449 PEPAASAAQGTGDPD----WEAP-GLPPAKRRKSESPDVDQASFSSDSPQDDTLTEHLQS 1503
Query: 202 KCEALLGLCQVRGGLPPFSEPSSLVPWPPGRSLPKAVRPPLSWPPFS 248
+++L L Q G P S P + P + P + P ++PP S
Sbjct: 1504 AIDSILNLQQAPGRTPAPSYPHAASAGTP--ASPPPLHRPEAYPPSS 1548
>gi|239049118 linker for activation of T cells isoform d [Homo
sapiens]
Length = 269
Score = 34.3 bits (77), Expect = 0.16
Identities = 36/116 (31%), Positives = 48/116 (41%), Gaps = 18/116 (15%)
Query: 219 FSEPSSLVPWPPGRSLPKAVRPPLSWPPFSQQQTLPV-MSGEALGWLGQA--------GP 269
F P ++ PWPP A P S+PP SQ LP+ S + LG + G
Sbjct: 87 FKRPHTVAPWPP------AYPPVTSYPPLSQPDLLPIPRSPQPLGGSHRTPSSRRDSDGA 140
Query: 270 LAMGAAPLGEPAKEDPMLAQEAGSALGSDV--DDGTSFLLTAGPSSWPGEWGPGFR 323
++ + EPA ED ++ G V D T TA PS+ P PG R
Sbjct: 141 NSVASYENEEPACEDADEDEDDYHNPGYLVVLPDSTPATSTAAPSA-PALSTPGIR 195
>gi|62739155 linker for activation of T cells isoform b [Homo
sapiens]
Length = 233
Score = 34.3 bits (77), Expect = 0.16
Identities = 36/116 (31%), Positives = 48/116 (41%), Gaps = 18/116 (15%)
Query: 219 FSEPSSLVPWPPGRSLPKAVRPPLSWPPFSQQQTLPV-MSGEALGWLGQA--------GP 269
F P ++ PWPP A P S+PP SQ LP+ S + LG + G
Sbjct: 51 FKRPHTVAPWPP------AYPPVTSYPPLSQPDLLPIPRSPQPLGGSHRTPSSRRDSDGA 104
Query: 270 LAMGAAPLGEPAKEDPMLAQEAGSALGSDV--DDGTSFLLTAGPSSWPGEWGPGFR 323
++ + EPA ED ++ G V D T TA PS+ P PG R
Sbjct: 105 NSVASYENEEPACEDADEDEDDYHNPGYLVVLPDSTPATSTAAPSA-PALSTPGIR 159
>gi|169213963 PREDICTED: hypothetical protein LOC147710 [Homo
sapiens]
Length = 192
Score = 33.9 bits (76), Expect = 0.20
Identities = 28/85 (32%), Positives = 32/85 (37%), Gaps = 14/85 (16%)
Query: 194 SCTSLGTDKCEALLGLCQVRGGLPPFSEPSSLVPWPPGRSLPKAVRPPLSWPPFSQQQTL 253
SC LGT C A + LV P SLPK + P P TL
Sbjct: 102 SCEQLGTYMCIAT-------------NSKKQLVSEPVTISLPKPIMQPTEAEPMEPDPTL 148
Query: 254 PVMSGEALGWLGQAGPLAMGAAPLG 278
+ G A+G L AG L GA G
Sbjct: 149 SLSGGSAIGLLA-AGILGAGALIAG 172
>gi|169214369 PREDICTED: hypothetical protein LOC147710 [Homo
sapiens]
Length = 192
Score = 33.9 bits (76), Expect = 0.20
Identities = 28/85 (32%), Positives = 32/85 (37%), Gaps = 14/85 (16%)
Query: 194 SCTSLGTDKCEALLGLCQVRGGLPPFSEPSSLVPWPPGRSLPKAVRPPLSWPPFSQQQTL 253
SC LGT C A + LV P SLPK + P P TL
Sbjct: 102 SCEQLGTYMCIAT-------------NSKKQLVSEPVTISLPKPIMQPTEAEPMEPDPTL 148
Query: 254 PVMSGEALGWLGQAGPLAMGAAPLG 278
+ G A+G L AG L GA G
Sbjct: 149 SLSGGSAIGLLA-AGILGAGALIAG 172
>gi|169213385 PREDICTED: hypothetical protein LOC147710 [Homo
sapiens]
Length = 192
Score = 33.9 bits (76), Expect = 0.20
Identities = 28/85 (32%), Positives = 32/85 (37%), Gaps = 14/85 (16%)
Query: 194 SCTSLGTDKCEALLGLCQVRGGLPPFSEPSSLVPWPPGRSLPKAVRPPLSWPPFSQQQTL 253
SC LGT C A + LV P SLPK + P P TL
Sbjct: 102 SCEQLGTYMCIAT-------------NSKKQLVSEPVTISLPKPIMQPTEAEPMEPDPTL 148
Query: 254 PVMSGEALGWLGQAGPLAMGAAPLG 278
+ G A+G L AG L GA G
Sbjct: 149 SLSGGSAIGLLA-AGILGAGALIAG 172
>gi|48255931 hepatoma-derived growth factor-related protein 2
isoform 1 [Homo sapiens]
Length = 671
Score = 33.9 bits (76), Expect = 0.20
Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 18/139 (12%)
Query: 105 SALGPSQEQHAILASSKEMWHSLQEDVLQLTLSSQIQAGVPDPGTGASSGTRTPDVKAFL 164
+++ PS+E+++ SS E + +D + + +A V P G G + +
Sbjct: 180 ASVSPSEEENS--ESSSESEKTSDQD-----FTPEKKAAVRAPRRGPLGGRKKKKAPSAS 232
Query: 165 ESPWSLDPASASPEPVPHILASSRQWDPASCTSLGTDKCEALLGLCQVRGGLPPFSEPSS 224
+S D A PEPV A +R AS +S + ++ + + + G P +P
Sbjct: 233 DSDSKADSDGAKPEPV----AMARS---ASSSSSSSSSSDSDVSVKKPPRGRKPAEKP-- 283
Query: 225 LVPWPPGRSLPKAVRPPLS 243
+P P GR PK RPP S
Sbjct: 284 -LPKPRGRK-PKPERPPSS 300
>gi|14249158 hepatoma-derived growth factor-related protein 2
isoform 2 [Homo sapiens]
Length = 670
Score = 33.9 bits (76), Expect = 0.20
Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 18/139 (12%)
Query: 105 SALGPSQEQHAILASSKEMWHSLQEDVLQLTLSSQIQAGVPDPGTGASSGTRTPDVKAFL 164
+++ PS+E+++ SS E + +D + + +A V P G G + +
Sbjct: 180 ASVSPSEEENS--ESSSESEKTSDQD-----FTPEKKAAVRAPRRGPLGGRKKKKAPSAS 232
Query: 165 ESPWSLDPASASPEPVPHILASSRQWDPASCTSLGTDKCEALLGLCQVRGGLPPFSEPSS 224
+S D A PEPV A +R AS +S + ++ + + + G P +P
Sbjct: 233 DSDSKADSDGAKPEPV----AMARS---ASSSSSSSSSSDSDVSVKKPPRGRKPAEKP-- 283
Query: 225 LVPWPPGRSLPKAVRPPLS 243
+P P GR PK RPP S
Sbjct: 284 -LPKPRGRK-PKPERPPSS 300
>gi|27436925 synoviolin 1 isoform a [Homo sapiens]
Length = 616
Score = 33.5 bits (75), Expect = 0.27
Identities = 34/121 (28%), Positives = 44/121 (36%), Gaps = 22/121 (18%)
Query: 215 GLPPFSEPSSLVPWPPGRSLPKAVRPPLS------WPPFSQQQTL--PVMSGEALGWLGQ 266
G PP P L+P PP + P+ + PP WPP + P SGEA+
Sbjct: 352 GPPPAPHPPPLLPQPP--NFPQGLLPPFPPGMFPLWPPMGPFPPVPPPPSSGEAV----- 404
Query: 267 AGPLAMGAAPLGEPAKEDPMLAQEAGSALGSDVDDGTSFLLTAGPSSWPGEWGPGFRAGP 326
A P A A A +A + G+ AGP+ PGF P
Sbjct: 405 APPSTSAALSRPSGAATTTAAGTSATAASATASGPGSGSAPEAGPA-------PGFPFPP 457
Query: 327 P 327
P
Sbjct: 458 P 458
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 33.5 bits (75), Expect = 0.27
Identities = 32/102 (31%), Positives = 39/102 (38%), Gaps = 15/102 (14%)
Query: 217 PPFSEPSSLVPWPPGRSLPKAVRPPLSWPPFSQQQTLPVMSGEALGWLGQAGPLAMGAAP 276
PP S P S PP ++ P PPL PP P MS A PLA
Sbjct: 454 PPASPPVSPSATPPSQAPPSLAAPPLQVPP--SPPASPPMSPSATPPPQAPPPLAAPPLQ 511
Query: 277 LGEPAKE-DPMLAQEAGSALGSDVDDGTSFLLTAGPSSWPGE 317
L +P + P LA AL S P+S+PG+
Sbjct: 512 LAKPPPQAPPALATPPLQALPSP------------PASFPGQ 541
Score = 31.2 bits (69), Expect = 1.3
Identities = 28/84 (33%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
Query: 164 LESPWSLDPASASPEPVPHILASSRQWDPASCT-SLGTDKCEALLGLCQVRGGLPPFSEP 222
L +P L P S S P L S P+ T SLG+ +A LP S P
Sbjct: 334 LATPLPLAPPSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQA------THSFLP--SPP 385
Query: 223 SSLVPWPPGRSLPKAVRPPLSWPP 246
S + PP ++ P PPL PP
Sbjct: 386 LSPLATPPPQAPPALALPPLQAPP 409
Score = 30.0 bits (66), Expect = 2.9
Identities = 42/162 (25%), Positives = 60/162 (37%), Gaps = 14/162 (8%)
Query: 151 ASSGTRTPDVKAFLESPWSLDPAS-ASPEPVPHILASSRQWDPASCTSLGTDKCEALLGL 209
A + RTP +A P L P SP P P + PA+ LG L
Sbjct: 10 AGAAARTPAARA----PGLLTPRPPGSPRPPPPVT-------PAALRVLGAAGAVGRKPL 58
Query: 210 CQVRGGLPPFSEPSSLVPWPPGRSLPKAVRPPLSWPPFS-QQQTLPVMSGEALGWLGQAG 268
+ GG+ + P S P RS + R P S PP S + + P + G + G
Sbjct: 59 AERAGGIGGATIPESAPRAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPG 118
Query: 269 PLAMGAAPLGEPAKEDPMLAQEAGSALGSDVDDGTSFLLTAG 310
A G G ++ ++ E A G + L+AG
Sbjct: 119 -RASGTTRPGPLGQKGLRISAEETVARGKATEAPKRSALSAG 159
>gi|169211815 PREDICTED: keratin associated protein 4.6 [Homo
sapiens]
Length = 288
Score = 33.5 bits (75), Expect = 0.27
Identities = 38/165 (23%), Positives = 57/165 (34%), Gaps = 18/165 (10%)
Query: 166 SPWSLDPASASPEPVPHILASSRQWDPASCTSL-----GTDKCEALLGLCQVRGGLPPFS 220
+PWS +P VP L + W PA+ + A +C S
Sbjct: 78 TPWS------APVVVPSALTRAVAWRPAAAPAAVRPPAAGPPAAAPAAVCPAAADPSAAS 131
Query: 221 EPSSLVPWPPGRSLPKAVRPPLSWPPFSQQQTL-PVMSGEALGWLGQAGPLAMGAAPLGE 279
++ P ++P AVRPP + PP + + P + + L A PLA
Sbjct: 132 LCAASPPAAVPAAVPAAVRPPAAGPPAAALAAVYPAAADPSAASLCAASPLA------AV 185
Query: 280 PAKEDPMLAQEAGSALGSDVDDGTSFLLTAGPSSWPGEWGPGFRA 324
PA P A G+ S + P++ P P A
Sbjct: 186 PAAASPAAVAPAAVCPGAAGPSAASLCAASQPAAVPAAASPAAAA 230
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 33.5 bits (75), Expect = 0.27
Identities = 32/102 (31%), Positives = 39/102 (38%), Gaps = 15/102 (14%)
Query: 217 PPFSEPSSLVPWPPGRSLPKAVRPPLSWPPFSQQQTLPVMSGEALGWLGQAGPLAMGAAP 276
PP S P S PP ++ P PPL PP P MS A PLA
Sbjct: 415 PPASPPVSPSATPPSQAPPSLAAPPLQVPP--SPPASPPMSPSATPPPQAPPPLAAPPLQ 472
Query: 277 LGEPAKE-DPMLAQEAGSALGSDVDDGTSFLLTAGPSSWPGE 317
L +P + P LA AL S P+S+PG+
Sbjct: 473 LAKPPPQAPPALATPPLQALPSP------------PASFPGQ 502
Score = 28.5 bits (62), Expect = 8.6
Identities = 27/84 (32%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 164 LESPWSLDPASASPEPVPHILASSRQWDPASCT-SLGTDKCEALLGLCQVRGGLPPFSEP 222
L +P P S S P L S P+ T SLG+ +A LP S P
Sbjct: 295 LATPSPSAPPSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQA------THSFLP--SPP 346
Query: 223 SSLVPWPPGRSLPKAVRPPLSWPP 246
S + PP ++ P PPL PP
Sbjct: 347 LSPLATPPPQAPPALALPPLQAPP 370
>gi|23199971 T-cell activation Rho GTPase-activating protein isoform
a [Homo sapiens]
Length = 553
Score = 33.5 bits (75), Expect = 0.27
Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 10/109 (9%)
Query: 87 REDMASVLEMSVQFL--RLASALGPSQEQHAILASSKEMWHSLQEDVLQLTLSSQIQAGV 144
++D+ + ++ V+FL G + H+ + S + H+ DV L S +
Sbjct: 77 QKDLNNKVKTLVEFLIDNCFEIFGENIPVHSSITSDDSLEHTDSSDVSTLQNDSAYDSND 136
Query: 145 PDPGTGASSGTRTPD--------VKAFLESPWSLDPASASPEPVPHILA 185
PD + +SSG +P A L+S D SPEP+ +A
Sbjct: 137 PDVESNSSSGISSPSRQPQVPMATAAGLDSAGPQDAREVSPEPIVSTVA 185
>gi|21314774 T-cell activation Rho GTPase-activating protein isoform
b [Homo sapiens]
Length = 731
Score = 33.5 bits (75), Expect = 0.27
Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 10/109 (9%)
Query: 87 REDMASVLEMSVQFL--RLASALGPSQEQHAILASSKEMWHSLQEDVLQLTLSSQIQAGV 144
++D+ + ++ V+FL G + H+ + S + H+ DV L S +
Sbjct: 255 QKDLNNKVKTLVEFLIDNCFEIFGENIPVHSSITSDDSLEHTDSSDVSTLQNDSAYDSND 314
Query: 145 PDPGTGASSGTRTPD--------VKAFLESPWSLDPASASPEPVPHILA 185
PD + +SSG +P A L+S D SPEP+ +A
Sbjct: 315 PDVESNSSSGISSPSRQPQVPMATAAGLDSAGPQDAREVSPEPIVSTVA 363
>gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens]
Length = 948
Score = 33.5 bits (75), Expect = 0.27
Identities = 42/145 (28%), Positives = 61/145 (42%), Gaps = 16/145 (11%)
Query: 125 HSLQEDVLQLTLSSQIQAGVPDP---GTGASSGTRTPDVKAFLESPWS-LDPASASPEPV 180
H L+ V QL+ + V P G+ ++SG + ++ F E+PWS P EP
Sbjct: 109 HVLERQV-QLSQGQNVVIKVKPPSKSGSASASGAQRGSLEEFEETPWSDQRPREGEGEPP 167
Query: 181 PHILASSRQWDPASCTSLGTDKCEALLGLCQVRGGLPPFSEPSSLV---PWPPGRSLPKA 237
L SR + GT E L +CQ G P + V P P R++ ++
Sbjct: 168 RGQLQPSR-----PTRARGTCSVEDPLLVCQKEPGKPRMVKSVGSVGDSPREPRRTVSES 222
Query: 238 VRPPLSWPPFSQQQTLPVMSGEALG 262
V + P S LP +G ALG
Sbjct: 223 VIAVKASFPSS---ALPPRTGVALG 244
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.131 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,534,354
Number of Sequences: 37866
Number of extensions: 944610
Number of successful extensions: 3610
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 160
Number of HSP's that attempted gapping in prelim test: 3421
Number of HSP's gapped (non-prelim): 352
length of query: 328
length of database: 18,247,518
effective HSP length: 103
effective length of query: 225
effective length of database: 14,347,320
effective search space: 3228147000
effective search space used: 3228147000
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.