Guide to the Human Genome
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Name: CCR10 Sequence: fasta or formatted (362aa) NCBI GI: 156104886
Description:

CC chemokine receptor 10

Referenced in:

Chemokines and Their Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.7         57           3
 C cysteine            2.8         10           1
 D aspartate           3.0         11           1
 E glutamate           3.0         11           2
 F phenylalanine       3.3         12           1
 G glycine             7.7         28           2
 H histidine           1.7          6           1
 I isoleucine          1.4          5           1
 K lysine              1.1          4           1
 L leucine            17.7         64           3
 M methionine          0.6          2           1
 N asparagine          0.8          3           1
 P proline             6.1         22           1
 Q glutamine           3.6         13           1
 R arginine            9.1         33           3
 S serine              8.3         30           2
 T threonine           4.4         16           1
 V valine              6.4         23           3
 W tryptophan          1.1          4           1
 Y tyrosine            2.2          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CC chemokine receptor 10 
CCR7                  0.272   chemokine (C-C motif) receptor 7 precursor 
CXCR3                 0.269   chemokine (C-X-C motif) receptor 3 isoform B 
CXCR3                 0.269   chemokine (C-X-C motif) receptor 3 isoform A 
CCRL1                 0.258   chemokine (C-C motif) receptor-like 1 
CCRL1                 0.258   chemokine (C-C motif) receptor-like 1 
CCR9                  0.243   chemokine (C-C motif) receptor 9 isoform B 
CCR9                  0.243   chemokine (C-C motif) receptor 9 isoform A 
CCR6                  0.240   chemokine (C-C motif) receptor 6 
CCR6                  0.240   chemokine (C-C motif) receptor 6 
CXCR5                 0.215   Burkitt lymphoma receptor 1 isoform 1 
CXCR5                 0.214   Burkitt lymphoma receptor 1 isoform 2 
IL8RB                 0.206   interleukin 8 receptor beta 
CXCR4                 0.204   chemokine (C-X-C motif) receptor 4 isoform b 
CXCR4                 0.204   chemokine (C-X-C motif) receptor 4 isoform a 
CCR5                  0.204   chemokine (C-C motif) receptor 5 
CCR5                  0.204   chemokine (C-C motif) receptor 5 
CCR4                  0.201   chemokine (C-C motif) receptor 4 
CCR1                  0.199   chemokine (C-C motif) receptor 1 
CCBP2                 0.198   chemokine binding protein 2 
CCR3                  0.196   CC chemokine receptor 3 
CCR3                  0.196   CC chemokine receptor 3 
IL8RA                 0.192   interleukin 8 receptor alpha 
CXCR6                 0.189   G protein-coupled receptor TYMSTR 
CCR2                  0.189   chemokine (C-C motif) receptor 2 isoform B 
CCR2                  0.187   chemokine (C-C motif) receptor 2 isoform A 
CX3CR1                0.171   chemokine (C-X3-C motif) receptor 1 
CXCR7                 0.157   chemokine orphan receptor 1 
CCR8                  0.149   chemokine (C-C motif) receptor 8 
XCR1                  0.149   XC chemokine receptor 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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