Guide to the Human Genome
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Name: CXCR3 Sequence: fasta or formatted (415aa) NCBI GI: 218563730
Description:

chemokine (C-X-C motif) receptor 3 isoform B

Referenced in:

Chemokines and Their Receptors

Other entries for this name:
alt prot [368aa] chemokine (C-X-C motif) receptor 3 isoform A
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1         42           2
 C cysteine            3.4         14           2
 D aspartate           4.1         17           1
 E glutamate           2.7         11           1
 F phenylalanine       4.8         20           1
 G glycine             6.5         27           2
 H histidine           2.2          9           2
 I isoleucine          1.9          8           1
 K lysine              1.7          7           1
 L leucine            16.9         70           3
 M methionine          1.7          7           1
 N asparagine          3.1         13           1
 P proline             4.8         20           2
 Q glutamine           3.4         14           1
 R arginine            6.5         27           2
 S serine              8.4         35           3
 T threonine           4.3         18           1
 V valine              8.4         35           6
 W tryptophan          1.4          6           1
 Y tyrosine            3.6         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chemokine (C-X-C motif) receptor 3 isoform B 
CXCR3                 0.876   chemokine (C-X-C motif) receptor 3 isoform A 
IL8RB                 0.271   interleukin 8 receptor beta 
CXCR5                 0.270   Burkitt lymphoma receptor 1 isoform 1 
CXCR5                 0.270   Burkitt lymphoma receptor 1 isoform 2 
IL8RA                 0.257   interleukin 8 receptor alpha 
CCR7                  0.248   chemokine (C-C motif) receptor 7 precursor 
CXCR4                 0.245   chemokine (C-X-C motif) receptor 4 isoform b 
CXCR4                 0.245   chemokine (C-X-C motif) receptor 4 isoform a 
CCR6                  0.235   chemokine (C-C motif) receptor 6 
CCR6                  0.235   chemokine (C-C motif) receptor 6 
CCBP2                 0.231   chemokine binding protein 2 
CCR4                  0.230   chemokine (C-C motif) receptor 4 
CCR10                 0.228   CC chemokine receptor 10 
CCR2                  0.223   chemokine (C-C motif) receptor 2 isoform A 
CCR2                  0.220   chemokine (C-C motif) receptor 2 isoform B 
CCR5                  0.213   chemokine (C-C motif) receptor 5 
CCR5                  0.213   chemokine (C-C motif) receptor 5 
CCR9                  0.212   chemokine (C-C motif) receptor 9 isoform B 
CCR9                  0.212   chemokine (C-C motif) receptor 9 isoform A 
CCR1                  0.209   chemokine (C-C motif) receptor 1 
CCRL1                 0.203   chemokine (C-C motif) receptor-like 1 
CCRL1                 0.203   chemokine (C-C motif) receptor-like 1 
CCR3                  0.203   CC chemokine receptor 3 
CCR3                  0.203   CC chemokine receptor 3 
CXCR6                 0.199   G protein-coupled receptor TYMSTR 
CX3CR1                0.189   chemokine (C-X3-C motif) receptor 1 
AGTR1                 0.188   angiotensin II receptor, type 1 
AGTR1                 0.188   angiotensin II receptor, type 1 
AGTR1                 0.188   angiotensin II receptor, type 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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