Guide to the Human Genome
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Name: CCR7 Sequence: fasta or formatted (378aa) NCBI GI: 4502641
Description:

chemokine (C-C motif) receptor 7 precursor

Referenced in:

Chemokines and Their Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         26           2
 C cysteine            4.0         15           2
 D aspartate           3.7         14           2
 E glutamate           2.9         11           1
 F phenylalanine       6.9         26           2
 G glycine             3.2         12           1
 H histidine           1.3          5           1
 I isoleucine          7.9         30           2
 K lysine              4.5         17           2
 L leucine            13.5         51           4
 M methionine          2.6         10           1
 N asparagine          3.2         12           1
 P proline             2.1          8           1
 Q glutamine           3.7         14           1
 R arginine            4.5         17           2
 S serine              7.9         30           3
 T threonine           5.6         21           4
 V valine             10.3         39           4
 W tryptophan          1.3          5           1
 Y tyrosine            4.0         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chemokine (C-C motif) receptor 7 precursor 
CCR9                  0.378   chemokine (C-C motif) receptor 9 isoform B 
CCR9                  0.378   chemokine (C-C motif) receptor 9 isoform A 
CCR6                  0.352   chemokine (C-C motif) receptor 6 
CCR6                  0.352   chemokine (C-C motif) receptor 6 
CCRL1                 0.309   chemokine (C-C motif) receptor-like 1 
CCRL1                 0.309   chemokine (C-C motif) receptor-like 1 
CCR4                  0.299   chemokine (C-C motif) receptor 4 
CXCR6                 0.287   G protein-coupled receptor TYMSTR 
CXCR5                 0.278   Burkitt lymphoma receptor 1 isoform 1 
CXCR5                 0.278   Burkitt lymphoma receptor 1 isoform 2 
CXCR3                 0.277   chemokine (C-X-C motif) receptor 3 isoform B 
CXCR3                 0.277   chemokine (C-X-C motif) receptor 3 isoform A 
IL8RB                 0.276   interleukin 8 receptor beta 
CCR2                  0.274   chemokine (C-C motif) receptor 2 isoform B 
CCR2                  0.273   chemokine (C-C motif) receptor 2 isoform A 
CCR5                  0.269   chemokine (C-C motif) receptor 5 
CCR5                  0.269   chemokine (C-C motif) receptor 5 
CCR1                  0.269   chemokine (C-C motif) receptor 1 
CXCR4                 0.267   chemokine (C-X-C motif) receptor 4 isoform a 
CXCR4                 0.265   chemokine (C-X-C motif) receptor 4 isoform b 
IL8RA                 0.259   interleukin 8 receptor alpha 
CCR10                 0.258   CC chemokine receptor 10 
CCR3                  0.253   CC chemokine receptor 3 
CCR3                  0.253   CC chemokine receptor 3 
CCR8                  0.238   chemokine (C-C motif) receptor 8 
CCBP2                 0.229   chemokine binding protein 2 
CX3CR1                0.229   chemokine (C-X3-C motif) receptor 1 
AGTR1                 0.205   angiotensin II receptor, type 1 
AGTR1                 0.205   angiotensin II receptor, type 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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