Guide to the Human Genome
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Name: CXCR3 Sequence: fasta or formatted (368aa) NCBI GI: 4504099
Description:

chemokine (C-X-C motif) receptor 3 isoform A

Referenced in:

Chemokines and Their Receptors

Other entries for this name:
alt prot [415aa] chemokine (C-X-C motif) receptor 3 isoform B
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.3         38           2
 C cysteine            3.8         14           2
 D aspartate           4.3         16           1
 E glutamate           2.7         10           1
 F phenylalanine       4.9         18           1
 G glycine             5.7         21           1
 H histidine           2.4          9           2
 I isoleucine          1.6          6           1
 K lysine              0.8          3           1
 L leucine            18.2         67           3
 M methionine          1.9          7           1
 N asparagine          3.5         13           1
 P proline             3.8         14           2
 Q glutamine           3.0         11           1
 R arginine            6.8         25           2
 S serine              7.6         28           3
 T threonine           3.8         14           1
 V valine              9.5         35           6
 W tryptophan          1.6          6           1
 Y tyrosine            3.5         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chemokine (C-X-C motif) receptor 3 isoform A 
CXCR3                 0.992   chemokine (C-X-C motif) receptor 3 isoform B 
IL8RB                 0.307   interleukin 8 receptor beta 
CXCR5                 0.305   Burkitt lymphoma receptor 1 isoform 1 
CXCR5                 0.305   Burkitt lymphoma receptor 1 isoform 2 
IL8RA                 0.291   interleukin 8 receptor alpha 
CCR7                  0.280   chemokine (C-C motif) receptor 7 precursor 
CXCR4                 0.277   chemokine (C-X-C motif) receptor 4 isoform b 
CXCR4                 0.277   chemokine (C-X-C motif) receptor 4 isoform a 
CCR6                  0.266   chemokine (C-C motif) receptor 6 
CCR6                  0.266   chemokine (C-C motif) receptor 6 
CCBP2                 0.262   chemokine binding protein 2 
CCR4                  0.261   chemokine (C-C motif) receptor 4 
CCR10                 0.258   CC chemokine receptor 10 
CCR2                  0.252   chemokine (C-C motif) receptor 2 isoform A 
CCR2                  0.249   chemokine (C-C motif) receptor 2 isoform B 
CCR5                  0.241   chemokine (C-C motif) receptor 5 
CCR5                  0.241   chemokine (C-C motif) receptor 5 
CCR9                  0.239   chemokine (C-C motif) receptor 9 isoform B 
CCR9                  0.239   chemokine (C-C motif) receptor 9 isoform A 
CCR1                  0.237   chemokine (C-C motif) receptor 1 
CCRL1                 0.230   chemokine (C-C motif) receptor-like 1 
CCRL1                 0.230   chemokine (C-C motif) receptor-like 1 
CCR3                  0.230   CC chemokine receptor 3 
CCR3                  0.230   CC chemokine receptor 3 
CXCR6                 0.225   G protein-coupled receptor TYMSTR 
CX3CR1                0.214   chemokine (C-X3-C motif) receptor 1 
AGTR1                 0.213   angiotensin II receptor, type 1 
AGTR1                 0.213   angiotensin II receptor, type 1 
AGTR1                 0.213   angiotensin II receptor, type 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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