Guide to the Human Genome
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Name: CCR1 Sequence: fasta or formatted (355aa) NCBI GI: 4502631
Description:

chemokine (C-C motif) receptor 1

Referenced in:

Chemokines and Their Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         19           1
 C cysteine            2.0          7           2
 D aspartate           3.7         13           2
 E glutamate           4.5         16           1
 F phenylalanine       8.2         29           2
 G glycine             3.9         14           1
 H histidine           3.1         11           2
 I isoleucine          8.2         29           3
 K lysine              4.2         15           2
 L leucine            14.6         52           2
 M methionine          1.7          6           1
 N asparagine          2.5          9           1
 P proline             3.7         13           2
 Q glutamine           2.5          9           1
 R arginine            4.8         17           2
 S serine              5.4         19           2
 T threonine           7.0         25           3
 V valine              8.2         29           2
 W tryptophan          2.0          7           1
 Y tyrosine            4.5         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chemokine (C-C motif) receptor 1 
CCR3                  0.626   CC chemokine receptor 3 
CCR3                  0.626   CC chemokine receptor 3 
CCR5                  0.553   chemokine (C-C motif) receptor 5 
CCR5                  0.553   chemokine (C-C motif) receptor 5 
CCR2                  0.541   chemokine (C-C motif) receptor 2 isoform B 
CCR2                  0.502   chemokine (C-C motif) receptor 2 isoform A 
CCR4                  0.452   chemokine (C-C motif) receptor 4 
CCR8                  0.374   chemokine (C-C motif) receptor 8 
CX3CR1                0.349   chemokine (C-X3-C motif) receptor 1 
CCRL2                 0.332   chemokine (C-C motif) receptor-like 2 isoform 2 [Ho...
CCRL2                 0.332   chemokine (C-C motif) receptor-like 2 isoform 1 [Hom...
CCBP2                 0.313   chemokine binding protein 2 
CCR9                  0.281   chemokine (C-C motif) receptor 9 isoform B 
CCR9                  0.281   chemokine (C-C motif) receptor 9 isoform A 
CCR6                  0.280   chemokine (C-C motif) receptor 6 
CCR6                  0.280   chemokine (C-C motif) receptor 6 
CCR7                  0.280   chemokine (C-C motif) receptor 7 precursor 
IL8RB                 0.255   interleukin 8 receptor beta 
XCR1                  0.254   XC chemokine receptor 1 
XCR1                  0.254   XC chemokine receptor 1 
CXCR3                 0.244   chemokine (C-X-C motif) receptor 3 isoform B 
AGTR1                 0.244   angiotensin II receptor, type 1 
AGTR1                 0.244   angiotensin II receptor, type 1 
AGTR1                 0.244   angiotensin II receptor, type 1 
AGTR1                 0.244   angiotensin II receptor, type 1 
AGTR1                 0.244   angiotensin II receptor, type 1 
CXCR3                 0.244   chemokine (C-X-C motif) receptor 3 isoform A 
CXCR6                 0.241   G protein-coupled receptor TYMSTR 
CXCR4                 0.241   chemokine (C-X-C motif) receptor 4 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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