Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CCR9 Sequence: fasta or formatted (357aa) NCBI GI: 14043044
Description:

chemokine (C-C motif) receptor 9 isoform B

Referenced in:

Chemokines and Their Receptors

Other entries for this name:
alt prot [369aa] chemokine (C-C motif) receptor 9 isoform A
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         27           3
 C cysteine            4.2         15           2
 D aspartate           3.4         12           2
 E glutamate           3.1         11           2
 F phenylalanine       7.0         25           2
 G glycine             2.5          9           1
 H histidine           1.4          5           1
 I isoleucine          7.6         27           3
 K lysine              5.3         19           2
 L leucine            11.8         42           2
 M methionine          3.9         14           1
 N asparagine          3.6         13           2
 P proline             2.2          8           2
 Q glutamine           3.4         12           1
 R arginine            3.1         11           2
 S serine              7.8         28           2
 T threonine           7.0         25           2
 V valine              8.7         31           2
 W tryptophan          2.0          7           1
 Y tyrosine            4.5         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chemokine (C-C motif) receptor 9 isoform B 
CCR9                  1.000   chemokine (C-C motif) receptor 9 isoform A 
CCR7                  0.394   chemokine (C-C motif) receptor 7 precursor 
CCR6                  0.319   chemokine (C-C motif) receptor 6 
CCR6                  0.319   chemokine (C-C motif) receptor 6 
CCRL1                 0.316   chemokine (C-C motif) receptor-like 1 
CCRL1                 0.316   chemokine (C-C motif) receptor-like 1 
CXCR6                 0.297   G protein-coupled receptor TYMSTR 
CCR5                  0.296   chemokine (C-C motif) receptor 5 
CCR5                  0.296   chemokine (C-C motif) receptor 5 
CCR4                  0.290   chemokine (C-C motif) receptor 4 
IL8RB                 0.286   interleukin 8 receptor beta 
CCR2                  0.284   chemokine (C-C motif) receptor 2 isoform B 
CCR1                  0.281   chemokine (C-C motif) receptor 1 
CCR2                  0.280   chemokine (C-C motif) receptor 2 isoform A 
CCR3                  0.277   CC chemokine receptor 3 
CCR3                  0.277   CC chemokine receptor 3 
IL8RA                 0.276   interleukin 8 receptor alpha 
CXCR4                 0.273   chemokine (C-X-C motif) receptor 4 isoform b 
CXCR4                 0.273   chemokine (C-X-C motif) receptor 4 isoform a 
CXCR5                 0.255   Burkitt lymphoma receptor 1 isoform 1 
CXCR5                 0.255   Burkitt lymphoma receptor 1 isoform 2 
CCR8                  0.251   chemokine (C-C motif) receptor 8 
CCBP2                 0.250   chemokine binding protein 2 
AGTR1                 0.248   angiotensin II receptor, type 1 
AGTR1                 0.248   angiotensin II receptor, type 1 
AGTR1                 0.248   angiotensin II receptor, type 1 
AGTR1                 0.248   angiotensin II receptor, type 1 
AGTR1                 0.248   angiotensin II receptor, type 1 
CXCR3                 0.247   chemokine (C-X-C motif) receptor 3 isoform B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press