Guide to the Human Genome
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Name: CCR9 Sequence: fasta or formatted (369aa) NCBI GI: 14043042
Description:

chemokine (C-C motif) receptor 9 isoform A

Referenced in:

Chemokines and Their Receptors

Other entries for this name:
alt prot [357aa] chemokine (C-C motif) receptor 9 isoform B
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         27           3
 C cysteine            4.1         15           2
 D aspartate           3.5         13           2
 E glutamate           3.0         11           2
 F phenylalanine       7.0         26           2
 G glycine             2.4          9           1
 H histidine           1.4          5           1
 I isoleucine          7.6         28           3
 K lysine              5.1         19           2
 L leucine            11.4         42           2
 M methionine          4.1         15           1
 N asparagine          3.8         14           2
 P proline             3.0         11           2
 Q glutamine           3.3         12           1
 R arginine            3.0         11           2
 S serine              7.9         29           2
 T threonine           7.6         28           2
 V valine              8.4         31           2
 W tryptophan          1.9          7           1
 Y tyrosine            4.3         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chemokine (C-C motif) receptor 9 isoform A 
CCR9                  0.964   chemokine (C-C motif) receptor 9 isoform B 
CCR7                  0.380   chemokine (C-C motif) receptor 7 precursor 
CCRL1                 0.309   chemokine (C-C motif) receptor-like 1 
CCRL1                 0.309   chemokine (C-C motif) receptor-like 1 
CCR6                  0.307   chemokine (C-C motif) receptor 6 
CCR6                  0.307   chemokine (C-C motif) receptor 6 
CXCR6                 0.287   G protein-coupled receptor TYMSTR 
CCR5                  0.285   chemokine (C-C motif) receptor 5 
CCR5                  0.285   chemokine (C-C motif) receptor 5 
CCR4                  0.282   chemokine (C-C motif) receptor 4 
IL8RB                 0.275   interleukin 8 receptor beta 
CCR2                  0.274   chemokine (C-C motif) receptor 2 isoform B 
CCR1                  0.271   chemokine (C-C motif) receptor 1 
CCR2                  0.270   chemokine (C-C motif) receptor 2 isoform A 
CCR3                  0.267   CC chemokine receptor 3 
CCR3                  0.267   CC chemokine receptor 3 
IL8RA                 0.266   interleukin 8 receptor alpha 
CXCR4                 0.264   chemokine (C-X-C motif) receptor 4 isoform b 
CXCR4                 0.264   chemokine (C-X-C motif) receptor 4 isoform a 
CXCR5                 0.246   Burkitt lymphoma receptor 1 isoform 1 
CXCR5                 0.246   Burkitt lymphoma receptor 1 isoform 2 
CCBP2                 0.246   chemokine binding protein 2 
CCR8                  0.242   chemokine (C-C motif) receptor 8 
AGTR1                 0.239   angiotensin II receptor, type 1 
AGTR1                 0.239   angiotensin II receptor, type 1 
AGTR1                 0.239   angiotensin II receptor, type 1 
AGTR1                 0.239   angiotensin II receptor, type 1 
AGTR1                 0.239   angiotensin II receptor, type 1 
CXCR3                 0.238   chemokine (C-X-C motif) receptor 3 isoform B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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